Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47793 * 2 1 4 4 H 1.09000 * 109.47486 * 55.08190 * 3 2 1 5 5 C 1.50693 * 109.47645 * 175.09167 * 3 2 1 6 6 H 1.08000 * 120.00509 * 119.99470 * 5 3 2 7 7 C 1.37883 * 119.99680 * 299.99677 * 5 3 2 8 8 N 1.31509 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47415 * 60.00115 * 9 7 5 11 11 H 1.48502 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47409 * 299.99732 * 9 7 5 13 13 N 1.46905 * 109.46620 * 295.09003 * 3 2 1 14 14 C 1.46902 * 110.99857 * 154.51317 * 13 3 2 15 15 C 1.50705 * 109.47030 * 185.20890 * 14 13 3 16 16 C 1.38231 * 119.99745 * 269.72641 * 15 14 13 17 17 C 1.50706 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38236 * 119.99866 * 179.79071 * 16 15 14 19 19 C 1.50697 * 120.00121 * 180.25224 * 18 16 15 20 20 C 1.38229 * 119.99929 * 0.45830 * 18 16 15 21 21 C 1.50705 * 120.00161 * 179.79072 * 20 18 16 22 22 C 1.38241 * 120.00099 * 359.77430 * 20 18 16 23 23 C 1.50702 * 120.00095 * 180.02562 * 22 20 18 24 24 C 1.38228 * 120.00056 * 90.00161 * 15 14 13 25 25 C 1.50700 * 120.00383 * 359.97438 * 24 15 14 26 26 H 1.08992 * 109.47233 * 180.28303 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.28243 * 1 2 3 28 28 H 1.08999 * 109.46476 * 60.28025 * 1 2 3 29 29 H 1.08996 * 109.47008 * 239.99218 * 2 1 3 30 30 H 1.09011 * 109.47011 * 119.99785 * 2 1 3 31 31 H 0.96999 * 120.00268 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00094 * 278.46400 * 13 3 2 33 33 H 1.09003 * 109.47163 * 305.20469 * 14 13 3 34 34 H 1.08999 * 109.47310 * 65.20800 * 14 13 3 35 35 H 1.09005 * 109.46680 * 90.00498 * 17 16 15 36 36 H 1.09000 * 109.47277 * 210.00197 * 17 16 15 37 37 H 1.08998 * 109.47349 * 330.00752 * 17 16 15 38 38 H 1.08998 * 109.47146 * 270.21034 * 19 18 16 39 39 H 1.09001 * 109.47096 * 30.20893 * 19 18 16 40 40 H 1.09000 * 109.47620 * 150.20709 * 19 18 16 41 41 H 1.09000 * 109.47337 * 269.98056 * 21 20 18 42 42 H 1.08998 * 109.46883 * 29.98526 * 21 20 18 43 43 H 1.08997 * 109.47072 * 149.97774 * 21 20 18 44 44 H 1.09004 * 109.46471 * 270.01719 * 23 22 20 45 45 H 1.09004 * 109.47051 * 30.01710 * 23 22 20 46 46 H 1.08996 * 109.47231 * 150.02256 * 23 22 20 47 47 H 1.09001 * 109.47265 * 90.00080 * 25 24 15 48 48 H 1.08997 * 109.47871 * 210.00419 * 25 24 15 49 49 H 1.09008 * 109.46939 * 330.00624 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6068 1.9811 0.8426 5 6 3.5422 1.4441 0.1216 6 1 4.1464 1.8889 -0.6552 7 6 4.1451 0.8776 1.2246 8 7 3.4095 0.3354 2.1703 9 14 6.0071 0.8791 1.3749 10 1 6.5027 2.2789 1.3745 11 1 6.4019 0.2141 2.6427 12 1 6.5970 0.1447 0.2269 13 7 1.6497 2.0998 -1.2544 14 6 1.5600 3.5556 -1.0800 15 6 1.0354 4.1819 -2.3464 16 6 1.9152 4.5918 -3.3306 17 6 3.3990 4.4131 -3.1370 18 6 1.4338 5.1623 -4.4941 19 6 2.3926 5.6041 -5.5695 20 6 0.0731 5.3315 -4.6692 21 6 -0.4515 5.9577 -5.9356 22 6 -0.8065 4.9259 -3.6829 23 6 -2.2900 5.1098 -3.8742 24 6 -0.3253 4.3515 -2.5213 25 6 -1.2842 3.9098 -1.4460 26 1 -0.3633 -1.0276 0.0051 27 1 -0.3633 0.5182 0.8874 28 1 -0.3632 0.5095 -0.8925 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 3.8337 -0.0635 2.9461 32 1 2.2870 1.8635 -2.0001 33 1 0.8837 3.7819 -0.2556 34 1 2.5492 3.9567 -0.8590 35 1 3.7017 3.4410 -3.5265 36 1 3.9325 5.2002 -3.6699 37 1 3.6361 4.4686 -2.0745 38 1 2.6834 6.6398 -5.3939 39 1 3.2786 4.9695 -5.5493 40 1 1.9094 5.5224 -6.5431 41 1 -0.5188 7.0379 -5.8060 42 1 0.2251 5.7321 -6.7599 43 1 -1.4403 5.5560 -6.1570 44 1 -2.5884 6.0836 -3.4856 45 1 -2.5292 5.0534 -4.9361 46 1 -2.8253 4.3256 -3.3389 47 1 -1.4555 4.7323 -0.7516 48 1 -2.2299 3.6154 -1.9009 49 1 -0.8606 3.0619 -0.9074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618387539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -6.819348 kcal Electronic energy + Delta-G solvation = -24055.726524 eV Core-core repulsion = 20981.252521 eV Total energy + Delta-G solvation = -3074.474002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04968 -36.39843 -34.73695 -34.31676 -32.01175 -30.84897 -29.49839 -28.96284 -27.88984 -26.70242 -25.28666 -23.93214 -23.31485 -22.18695 -19.52254 -19.21551 -19.00077 -16.91358 -16.37271 -14.95543 -14.84730 -14.60310 -14.09113 -13.77512 -13.67356 -13.50448 -13.30785 -12.95523 -12.87922 -12.80391 -12.49348 -12.42263 -12.37375 -12.27610 -11.86989 -11.75338 -11.61529 -11.50624 -11.21290 -11.15577 -11.06023 -10.80684 -10.65716 -10.58452 -10.39406 -10.28443 -10.05517 -9.57180 -9.47564 -9.03661 -8.36930 -7.97153 -7.92204 -7.18905 -5.98621 -4.11732 1.67310 1.68871 3.27835 3.33303 3.35509 3.92808 4.39706 4.90667 4.96048 5.14850 5.16070 5.19626 5.26704 5.31613 5.47307 5.54303 5.62624 5.64751 5.69401 5.75379 5.77371 5.84948 5.85849 5.89711 5.96094 5.98585 6.04876 6.13229 6.16504 6.30507 6.36760 6.43282 6.49092 6.54303 6.69305 6.71090 6.76066 6.89425 6.92647 7.13166 7.20251 7.20687 7.41882 7.46646 7.60946 7.78742 8.10905 8.17242 8.35162 8.68164 9.01266 9.55817 11.01170 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.004631 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.369633 B = 6044.325129 C = 7204.738629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.100 3.900 15 C -0.064 4.064 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.096 4.096 19 C -0.113 4.113 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.064 4.064 25 C -0.120 4.120 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.261 0.739 32 H 0.327 0.673 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 10.007 -12.512 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.030 4.030 15 C -0.065 4.065 16 C -0.078 4.078 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.170 4.170 22 C -0.097 4.097 23 C -0.171 4.171 24 C -0.064 4.064 25 C -0.176 4.176 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.090 9.796 -12.200 17.614 hybrid contribution 2.107 0.186 0.256 2.131 sum -5.983 9.982 -11.944 16.676 Atomic orbital electron populations 1.21706 0.99060 0.98324 1.00366 1.21486 0.92065 0.99237 1.01586 1.19152 0.92751 0.91184 0.86146 0.95076 1.21829 0.92776 1.38254 1.05535 0.92937 1.24916 0.97776 0.95002 0.95711 1.69862 1.34864 1.38132 1.09442 0.86747 0.86248 0.78161 0.77359 1.20425 1.21263 1.20312 1.60929 1.55269 1.04781 1.09812 1.20787 0.98985 0.90354 0.92829 1.19758 0.92348 0.97945 0.96444 1.19580 0.95725 0.99013 0.93530 1.20884 0.91739 1.01777 1.03168 1.19419 0.93372 1.01153 0.95608 1.20812 0.98310 1.01003 0.96812 1.19384 0.92555 1.01185 0.96179 1.20847 1.01130 1.00045 0.95005 1.19459 0.95235 1.00820 0.94204 1.20852 0.92400 1.01873 1.01935 1.19506 0.93723 0.98090 0.95124 1.20910 0.97774 1.02008 0.96947 0.95749 0.94545 0.93238 0.95191 0.89211 0.92856 0.85644 0.91346 0.94285 0.91193 0.92139 0.90727 0.91799 0.91612 0.91717 0.91782 0.91679 0.91652 0.91789 0.91813 0.91367 0.92059 0.91978 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.65 16 3 C 0.22 5.23 1.98 -68.87 -0.14 5.09 16 4 H 0.03 0.84 7.71 -51.93 -0.40 0.44 16 5 C -0.54 -14.40 8.45 -34.44 -0.29 -14.69 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.68 -14.10 5.62 -109.22 -0.61 -14.71 16 14 C 0.10 1.89 4.42 -4.97 -0.02 1.87 16 15 C -0.06 -1.10 5.44 -104.63 -0.57 -1.67 16 16 C -0.08 -1.23 5.88 -104.62 -0.62 -1.85 16 17 C -0.12 -1.77 8.78 36.01 0.32 -1.45 16 18 C -0.10 -1.35 5.88 -104.63 -0.62 -1.97 16 19 C -0.11 -1.26 8.78 36.00 0.32 -0.94 16 20 C -0.09 -1.26 5.88 -104.62 -0.62 -1.87 16 21 C -0.11 -1.16 9.20 36.01 0.33 -0.83 16 22 C -0.10 -1.37 5.88 -104.62 -0.62 -1.99 16 23 C -0.11 -1.26 9.20 36.01 0.33 -0.92 16 24 C -0.06 -1.01 5.88 -104.63 -0.62 -1.62 16 25 C -0.12 -1.74 8.79 36.01 0.32 -1.43 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.98 7.76 -51.93 -0.40 0.58 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.39 5.95 -51.92 -0.31 2.08 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.33 6.92 8.46 -39.29 -0.33 6.59 16 33 H 0.07 1.32 6.48 -51.93 -0.34 0.99 16 34 H 0.04 0.79 5.90 -51.93 -0.31 0.48 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.76 6.72 -51.93 -0.35 0.41 16 37 H 0.07 1.21 5.94 -51.93 -0.31 0.90 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.71 6.72 -51.93 -0.35 0.37 16 40 H 0.06 0.63 5.95 -51.93 -0.31 0.32 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 43 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.61 5.95 -51.93 -0.31 0.30 16 46 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.79 5.95 -51.93 -0.31 0.48 16 49 H 0.09 1.42 6.67 -51.92 -0.35 1.08 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -27.64 367.90 -10.04 -37.68 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.22 Total: 7.29 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -2.36 Total: -27.62 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.01 Total: -38.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.64 -10.04 -37.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618387539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.859 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds