Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47793 * 2 1 4 4 H 1.09000 * 109.47486 * 55.08190 * 3 2 1 5 5 C 1.50693 * 109.47645 * 175.09167 * 3 2 1 6 6 H 1.08000 * 120.00509 * 119.99470 * 5 3 2 7 7 C 1.37883 * 119.99680 * 299.99677 * 5 3 2 8 8 N 1.31509 * 120.00122 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47415 * 60.00115 * 9 7 5 11 11 H 1.48502 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47409 * 299.99732 * 9 7 5 13 13 N 1.46905 * 109.46620 * 295.09003 * 3 2 1 14 14 C 1.46902 * 110.99857 * 154.51317 * 13 3 2 15 15 C 1.50705 * 109.47030 * 185.20890 * 14 13 3 16 16 C 1.38231 * 119.99745 * 269.72641 * 15 14 13 17 17 C 1.50706 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38236 * 119.99866 * 179.79071 * 16 15 14 19 19 C 1.50697 * 120.00121 * 180.25224 * 18 16 15 20 20 C 1.38229 * 119.99929 * 0.45830 * 18 16 15 21 21 C 1.50705 * 120.00161 * 179.79072 * 20 18 16 22 22 C 1.38241 * 120.00099 * 359.77430 * 20 18 16 23 23 C 1.50702 * 120.00095 * 180.02562 * 22 20 18 24 24 C 1.38228 * 120.00056 * 90.00161 * 15 14 13 25 25 C 1.50700 * 120.00383 * 359.97438 * 24 15 14 26 26 H 1.08992 * 109.47233 * 180.28303 * 1 2 3 27 27 H 1.08999 * 109.46924 * 300.28243 * 1 2 3 28 28 H 1.08999 * 109.46476 * 60.28025 * 1 2 3 29 29 H 1.08996 * 109.47008 * 239.99218 * 2 1 3 30 30 H 1.09011 * 109.47011 * 119.99785 * 2 1 3 31 31 H 0.96999 * 120.00268 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00094 * 278.46400 * 13 3 2 33 33 H 1.09003 * 109.47163 * 305.20469 * 14 13 3 34 34 H 1.08999 * 109.47310 * 65.20800 * 14 13 3 35 35 H 1.09005 * 109.46680 * 90.00498 * 17 16 15 36 36 H 1.09000 * 109.47277 * 210.00197 * 17 16 15 37 37 H 1.08998 * 109.47349 * 330.00752 * 17 16 15 38 38 H 1.08998 * 109.47146 * 270.21034 * 19 18 16 39 39 H 1.09001 * 109.47096 * 30.20893 * 19 18 16 40 40 H 1.09000 * 109.47620 * 150.20709 * 19 18 16 41 41 H 1.09000 * 109.47337 * 269.98056 * 21 20 18 42 42 H 1.08998 * 109.46883 * 29.98526 * 21 20 18 43 43 H 1.08997 * 109.47072 * 149.97774 * 21 20 18 44 44 H 1.09004 * 109.46471 * 270.01719 * 23 22 20 45 45 H 1.09004 * 109.47051 * 30.01710 * 23 22 20 46 46 H 1.08996 * 109.47231 * 150.02256 * 23 22 20 47 47 H 1.09001 * 109.47265 * 90.00080 * 25 24 15 48 48 H 1.08997 * 109.47871 * 210.00419 * 25 24 15 49 49 H 1.09008 * 109.46939 * 330.00624 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6068 1.9811 0.8426 5 6 3.5422 1.4441 0.1216 6 1 4.1464 1.8889 -0.6552 7 6 4.1451 0.8776 1.2246 8 7 3.4095 0.3354 2.1703 9 14 6.0071 0.8791 1.3749 10 1 6.5027 2.2789 1.3745 11 1 6.4019 0.2141 2.6427 12 1 6.5970 0.1447 0.2269 13 7 1.6497 2.0998 -1.2544 14 6 1.5600 3.5556 -1.0800 15 6 1.0354 4.1819 -2.3464 16 6 1.9152 4.5918 -3.3306 17 6 3.3990 4.4131 -3.1370 18 6 1.4338 5.1623 -4.4941 19 6 2.3926 5.6041 -5.5695 20 6 0.0731 5.3315 -4.6692 21 6 -0.4515 5.9577 -5.9356 22 6 -0.8065 4.9259 -3.6829 23 6 -2.2900 5.1098 -3.8742 24 6 -0.3253 4.3515 -2.5213 25 6 -1.2842 3.9098 -1.4460 26 1 -0.3633 -1.0276 0.0051 27 1 -0.3633 0.5182 0.8874 28 1 -0.3632 0.5095 -0.8925 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 3.8337 -0.0635 2.9461 32 1 2.2870 1.8635 -2.0001 33 1 0.8837 3.7819 -0.2556 34 1 2.5492 3.9567 -0.8590 35 1 3.7017 3.4410 -3.5265 36 1 3.9325 5.2002 -3.6699 37 1 3.6361 4.4686 -2.0745 38 1 2.6834 6.6398 -5.3939 39 1 3.2786 4.9695 -5.5493 40 1 1.9094 5.5224 -6.5431 41 1 -0.5188 7.0379 -5.8060 42 1 0.2251 5.7321 -6.7599 43 1 -1.4403 5.5560 -6.1570 44 1 -2.5884 6.0836 -3.4856 45 1 -2.5292 5.0534 -4.9361 46 1 -2.8253 4.3256 -3.3389 47 1 -1.4555 4.7323 -0.7516 48 1 -2.2299 3.6154 -1.9009 49 1 -0.8606 3.0619 -0.9074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618387539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = -19.646151 kcal Electronic energy + Delta-G solvation = -24056.282735 eV Core-core repulsion = 20981.252521 eV Total energy + Delta-G solvation = -3075.030214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17895 -38.10371 -35.81078 -35.73118 -33.89434 -32.51571 -30.53906 -30.03602 -29.13968 -28.18665 -26.76253 -24.98560 -24.88497 -23.81760 -21.41811 -20.31642 -20.22467 -18.74540 -17.70698 -16.83024 -16.14539 -15.90842 -15.44013 -15.37085 -14.95983 -14.57492 -14.52290 -14.34460 -14.10662 -13.98820 -13.79557 -13.56601 -13.46414 -13.39727 -13.18488 -13.14118 -13.02660 -12.99312 -12.80186 -12.62608 -12.52511 -12.43149 -12.09644 -11.89447 -11.77734 -11.56404 -11.48403 -11.45001 -11.23029 -10.95841 -10.45767 -9.18472 -9.03406 -8.94123 -8.04606 -6.26785 0.53056 0.55344 1.38297 1.38945 1.46253 2.39839 2.78300 3.15025 3.78971 3.91153 3.97765 4.08503 4.14693 4.22493 4.30312 4.53470 4.58137 4.64142 4.65200 4.71635 4.73338 4.75986 4.77671 4.79625 4.81781 4.83476 4.87461 4.92248 4.93690 5.01534 5.08199 5.12962 5.16607 5.21063 5.25288 5.30974 5.42862 5.51657 5.54715 5.61703 5.63488 5.77273 5.79137 5.82505 5.98775 6.10991 6.20827 6.31783 6.40139 6.80030 7.01078 7.44410 8.91546 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.004631 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.369633 B = 6044.325129 C = 7204.738629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.002 1.002 5 C -0.558 4.558 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.111 3.889 15 C -0.089 4.089 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.103 4.103 23 C -0.112 4.112 24 C -0.082 4.082 25 C -0.115 4.115 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.326 0.674 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 11.169 -14.999 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.016 0.984 5 C -0.597 4.597 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.295 5.295 14 C -0.018 4.018 15 C -0.089 4.089 16 C -0.096 4.096 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.167 4.167 20 C -0.096 4.096 21 C -0.168 4.168 22 C -0.103 4.103 23 C -0.168 4.168 24 C -0.082 4.082 25 C -0.171 4.171 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.785 10.966 -14.699 20.335 hybrid contribution 2.279 -0.117 0.988 2.487 sum -6.505 10.850 -13.711 18.656 Atomic orbital electron populations 1.21550 0.96451 0.99652 1.00452 1.21345 0.94376 0.98341 0.99889 1.18919 0.91620 0.91439 0.86486 0.98363 1.22122 0.94007 1.38043 1.05563 0.93262 1.25629 1.01915 0.94772 0.95481 1.69992 1.36411 1.38716 1.09800 0.85781 0.81279 0.78173 0.77407 1.20091 1.20906 1.19740 1.60861 1.54488 1.06037 1.08067 1.20622 0.97835 0.89108 0.94215 1.19613 0.93475 0.99868 0.95983 1.19745 0.95783 0.99823 0.94242 1.20820 0.91924 1.02319 1.01915 1.19795 0.94565 1.00321 0.95543 1.20863 0.97752 1.01549 0.96582 1.19872 0.92304 1.00127 0.97294 1.20916 1.01930 1.00578 0.93369 1.19847 0.97215 0.99845 0.93423 1.20903 0.90033 1.02583 1.03305 1.19704 0.93286 0.98896 0.96323 1.20853 0.98254 1.01185 0.96794 0.93729 0.95022 0.92515 0.95598 0.92003 0.92911 0.85846 0.92502 0.96081 0.91699 0.89907 0.92957 0.90571 0.91605 0.89843 0.90427 0.90459 0.90365 0.90543 0.89984 0.91195 0.91371 0.90049 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.80 71.98 0.71 -4.41 16 2 C -0.10 -4.94 5.45 30.59 0.17 -4.77 16 3 C 0.22 11.35 1.98 44.16 0.09 11.44 16 4 H 0.00 -0.09 7.71 -2.39 -0.02 -0.11 16 5 C -0.56 -30.49 8.45 25.60 0.22 -30.27 16 6 H 0.05 2.66 7.73 -2.91 -0.02 2.64 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.67 -28.84 5.62 -499.46 -2.81 -31.64 16 14 C 0.11 4.47 4.42 85.56 0.38 4.84 16 15 C -0.09 -3.10 5.44 -19.87 -0.11 -3.20 16 16 C -0.10 -3.01 5.88 -19.86 -0.12 -3.13 16 17 C -0.11 -3.40 8.78 71.24 0.63 -2.77 16 18 C -0.10 -2.71 5.88 -19.87 -0.12 -2.83 16 19 C -0.11 -2.16 8.78 71.23 0.63 -1.54 16 20 C -0.10 -2.34 5.88 -19.86 -0.12 -2.46 16 21 C -0.11 -1.82 9.20 71.24 0.66 -1.17 16 22 C -0.10 -2.71 5.88 -19.86 -0.12 -2.83 16 23 C -0.11 -2.12 9.20 71.24 0.66 -1.47 16 24 C -0.08 -2.55 5.88 -19.87 -0.12 -2.67 16 25 C -0.11 -3.32 8.79 71.24 0.63 -2.69 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.06 2.24 7.76 -2.39 -0.02 2.22 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 3.40 5.95 -2.38 -0.01 3.38 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.33 14.29 8.46 -89.69 -0.76 13.53 16 33 H 0.06 2.36 6.48 -2.39 -0.02 2.34 16 34 H 0.02 0.91 5.90 -2.39 -0.01 0.90 16 35 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 2.03 6.72 -2.39 -0.02 2.01 16 37 H 0.05 1.77 5.94 -2.39 -0.01 1.76 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.28 6.72 -2.39 -0.02 1.26 16 40 H 0.08 1.30 5.95 -2.39 -0.01 1.29 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.09 5.95 -2.39 -0.01 1.07 16 43 H 0.08 1.09 5.95 -2.39 -0.01 1.07 16 44 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.08 1.25 5.95 -2.38 -0.01 1.24 16 46 H 0.07 1.30 5.95 -2.39 -0.01 1.28 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.08 1.98 5.95 -2.39 -0.01 1.96 16 49 H 0.06 2.01 6.67 -2.38 -0.02 1.99 16 Total: -1.00 -60.89 367.90 4.15 -56.75 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.19 Total: 29.55 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 4.50 Total: -48.24 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.56 Total: -83.75 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.89 4.15 -56.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618387539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.101 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds