Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 H 1.09007 * 109.46887 * 304.23503 * 3 2 1 5 5 C 1.50699 * 109.47271 * 184.23589 * 3 2 1 6 6 H 1.07997 * 119.99900 * 240.00425 * 5 3 2 7 7 C 1.37877 * 119.99866 * 59.99651 * 5 3 2 8 8 N 1.31511 * 120.00250 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99801 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46894 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47123 * 120.00011 * 9 7 5 12 12 H 1.48503 * 109.47262 * 240.00200 * 9 7 5 13 13 N 1.46898 * 109.47217 * 64.23226 * 3 2 1 14 14 C 1.46894 * 111.00011 * 205.72287 * 13 3 2 15 15 C 1.50705 * 109.46960 * 174.82397 * 14 13 3 16 16 C 1.38241 * 119.99713 * 90.00587 * 15 14 13 17 17 C 1.50703 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.38228 * 119.99744 * 179.73163 * 16 15 14 19 19 C 1.50704 * 119.99635 * 180.27374 * 18 16 15 20 20 C 1.38230 * 120.00329 * 0.24189 * 18 16 15 21 21 C 1.50704 * 120.00514 * 180.02562 * 20 18 16 22 22 C 1.38240 * 119.99886 * 0.02824 * 20 18 16 23 23 C 1.50699 * 120.00044 * 179.97438 * 22 20 18 24 24 C 1.38230 * 120.00072 * 359.95701 * 22 20 18 25 25 C 1.50697 * 120.00264 * 180.02562 * 24 22 20 26 26 H 1.08994 * 109.47125 * 294.83094 * 1 2 3 27 27 H 1.09000 * 109.46893 * 54.83599 * 1 2 3 28 28 H 1.09002 * 109.47020 * 174.83378 * 1 2 3 29 29 H 1.09004 * 109.46922 * 240.00465 * 2 1 3 30 30 H 1.08994 * 109.47404 * 120.00269 * 2 1 3 31 31 H 0.96999 * 119.99802 * 180.02562 * 8 7 5 32 32 H 1.00893 * 110.99537 * 81.77009 * 13 3 2 33 33 H 1.09002 * 109.47129 * 54.83153 * 14 13 3 34 34 H 1.08998 * 109.47301 * 294.82685 * 14 13 3 35 35 H 1.08997 * 109.47173 * 269.73048 * 17 16 15 36 36 H 1.09006 * 109.46500 * 149.73232 * 17 16 15 37 37 H 1.08996 * 109.47514 * 29.73601 * 17 16 15 38 38 H 1.09000 * 109.47149 * 89.99953 * 19 18 16 39 39 H 1.09007 * 109.46736 * 209.99552 * 19 18 16 40 40 H 1.08998 * 109.47309 * 329.98892 * 19 18 16 41 41 H 1.09000 * 109.47105 * 89.99675 * 21 20 18 42 42 H 1.08994 * 109.47188 * 210.00704 * 21 20 18 43 43 H 1.09006 * 109.46385 * 330.00595 * 21 20 18 44 44 H 1.09006 * 109.46889 * 89.99925 * 23 22 20 45 45 H 1.08993 * 109.47780 * 210.00063 * 23 22 20 46 46 H 1.08997 * 109.47519 * 330.00905 * 23 22 20 47 47 H 1.08997 * 109.47091 * 89.99332 * 25 24 22 48 48 H 1.09000 * 109.47473 * 210.00073 * 25 24 22 49 49 H 1.09002 * 109.46901 * 329.99597 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9778 -0.8497 5 6 3.5433 1.4439 -0.1049 6 1 4.1388 1.8919 0.6768 7 6 4.1585 0.8730 -1.1989 8 7 3.4334 0.3278 -2.1510 9 14 6.0221 0.8741 -1.3286 10 1 6.6008 1.5447 -0.1367 11 1 6.5142 -0.5252 -1.3976 12 1 6.4325 1.6043 -2.5548 13 7 1.6356 2.1049 1.2472 14 6 1.5423 3.5594 1.0646 15 6 1.0045 4.1903 2.3231 16 6 1.8740 4.6034 3.3152 17 6 3.3596 4.4223 3.1384 18 6 1.3810 5.1871 4.4672 19 6 2.3294 5.6430 5.5461 20 6 0.0184 5.3532 4.6293 21 6 -0.5191 5.9900 5.8850 22 6 -0.8515 4.9350 3.6396 23 6 -2.3371 5.1155 3.8166 24 6 -0.3585 4.3516 2.4875 25 6 -1.3067 3.8962 1.4083 26 1 -0.3633 0.4315 0.9326 27 1 -0.3633 0.5919 -0.8401 28 1 -0.3633 -1.0235 -0.0925 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8663 -0.0741 -2.9204 32 1 2.2668 1.8747 1.9999 33 1 0.8724 3.7790 0.2332 34 1 2.5319 3.9629 0.8501 35 1 3.6579 3.4536 3.5394 36 1 3.8879 5.2138 3.6701 37 1 3.6077 4.4687 2.0781 38 1 2.6175 6.6782 5.3629 39 1 1.8383 5.5689 6.5165 40 1 3.2179 5.0118 5.5394 41 1 -0.5886 7.0687 5.7442 42 1 -1.5084 5.5873 6.1019 43 1 0.1513 5.7748 6.7171 44 1 -2.6356 6.0843 3.4159 45 1 -2.8653 4.3241 3.2849 46 1 -2.5851 5.0690 4.8770 47 1 -1.4756 4.7118 0.7052 48 1 -0.8755 3.0452 0.8811 49 1 -2.2550 3.6021 1.8583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618387540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -6.966972 kcal Electronic energy + Delta-G solvation = -24058.549476 eV Core-core repulsion = 20984.069073 eV Total energy + Delta-G solvation = -3074.480404 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04929 -36.39990 -34.73690 -34.31635 -32.01296 -30.85147 -29.49686 -28.96276 -27.88867 -26.70408 -25.28784 -23.93182 -23.31468 -22.19174 -19.52469 -19.21420 -19.00239 -16.91535 -16.37622 -14.95409 -14.84805 -14.60042 -14.09638 -13.76997 -13.67284 -13.50004 -13.31068 -12.94848 -12.88155 -12.81153 -12.49544 -12.42151 -12.37498 -12.27647 -11.87604 -11.75514 -11.61471 -11.50385 -11.21384 -11.16793 -11.05400 -10.81119 -10.63773 -10.58401 -10.38939 -10.28486 -10.06101 -9.57113 -9.48088 -9.02450 -8.37903 -7.97085 -7.92148 -7.18824 -5.99172 -4.12079 1.67409 1.68857 3.25445 3.34291 3.36963 3.92877 4.39475 4.90688 4.96103 5.14852 5.16126 5.19659 5.26427 5.31707 5.47309 5.54365 5.62724 5.64817 5.69437 5.75479 5.77454 5.84953 5.85925 5.89811 5.96168 5.98738 6.05044 6.13353 6.16592 6.30608 6.37086 6.43297 6.49108 6.53215 6.69265 6.71398 6.75730 6.89458 6.92759 7.13084 7.19695 7.20632 7.41973 7.46658 7.60988 7.78553 8.10745 8.16969 8.34973 8.68144 9.01371 9.55654 11.00695 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.004632 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.930695 B = 6043.353408 C = 7205.858964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.679 5.679 14 C 0.100 3.900 15 C -0.065 4.065 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.096 4.096 19 C -0.113 4.113 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.064 4.064 25 C -0.120 4.120 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.260 0.740 32 H 0.327 0.673 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 10.058 12.416 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.308 5.308 14 C -0.029 4.029 15 C -0.065 4.065 16 C -0.078 4.078 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.170 4.170 22 C -0.097 4.097 23 C -0.171 4.171 24 C -0.064 4.064 25 C -0.176 4.176 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.238 9.850 12.108 17.649 hybrid contribution 2.101 0.178 -0.257 2.124 sum -6.137 10.027 11.851 16.693 Atomic orbital electron populations 1.21692 0.99036 0.98231 1.00344 1.21487 0.92057 0.99226 1.01602 1.19174 0.92694 0.91132 0.86304 0.95073 1.21903 0.92744 1.37856 1.05749 0.92819 1.24921 0.97828 0.95024 0.95681 1.69886 1.34732 1.38129 1.09549 0.86635 0.86273 0.77733 0.77913 1.19931 1.20991 1.21088 1.60926 1.55388 1.04856 1.09616 1.20785 0.98890 0.90334 0.92936 1.19766 0.92383 0.97995 0.96382 1.19580 0.95742 0.98944 0.93554 1.20884 0.91711 1.01768 1.03210 1.19419 0.93347 1.01064 0.95744 1.20816 0.98403 1.00952 0.96773 1.19383 0.92569 1.01128 0.96209 1.20848 1.01068 0.99990 0.95123 1.19457 0.95248 1.00741 0.94287 1.20850 0.92369 1.01887 1.01952 1.19507 0.93677 0.98039 0.95195 1.20908 0.97879 1.01975 0.96872 0.93416 0.94496 0.95765 0.89229 0.95164 0.92976 0.85638 0.91353 0.94297 0.91192 0.92140 0.90721 0.91795 0.91722 0.91607 0.91783 0.91648 0.91680 0.91789 0.91370 0.91818 0.92066 0.89582 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.42 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.21 5.21 1.98 -68.87 -0.14 5.07 16 4 H 0.03 0.84 7.71 -51.92 -0.40 0.44 16 5 C -0.54 -14.36 8.46 -34.44 -0.29 -14.65 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.75 11.30 55.43 0.63 -24.12 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.68 -14.09 5.67 -109.22 -0.62 -14.71 16 14 C 0.10 1.89 4.42 -4.98 -0.02 1.87 16 15 C -0.06 -1.10 5.44 -104.62 -0.57 -1.67 16 16 C -0.08 -1.23 5.88 -104.62 -0.62 -1.85 16 17 C -0.12 -1.77 8.79 36.01 0.32 -1.46 16 18 C -0.10 -1.36 5.88 -104.63 -0.62 -1.97 16 19 C -0.11 -1.26 8.79 36.01 0.32 -0.94 16 20 C -0.09 -1.26 5.88 -104.62 -0.62 -1.87 16 21 C -0.11 -1.16 9.20 36.01 0.33 -0.83 16 22 C -0.10 -1.37 5.88 -104.62 -0.62 -1.99 16 23 C -0.11 -1.26 9.20 36.01 0.33 -0.92 16 24 C -0.06 -1.01 5.88 -104.63 -0.62 -1.62 16 25 C -0.12 -1.74 8.78 36.00 0.32 -1.43 16 26 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.33 6.93 8.45 -39.30 -0.33 6.59 16 33 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 34 H 0.04 0.78 5.91 -51.93 -0.31 0.48 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.77 6.70 -51.93 -0.35 0.42 16 37 H 0.07 1.21 5.94 -51.93 -0.31 0.90 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 5.95 -51.93 -0.31 0.32 16 40 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 43 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 46 H 0.06 0.61 5.95 -51.93 -0.31 0.30 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.43 6.67 -51.93 -0.35 1.08 16 49 H 0.06 0.79 5.95 -51.93 -0.31 0.48 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -27.68 368.04 -10.05 -37.73 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.22 Total: 7.20 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -2.36 Total: -27.59 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.01 Total: -38.83 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.68 -10.05 -37.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618387540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.761 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds