Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 H 1.09007 * 109.46887 * 304.23503 * 3 2 1 5 5 C 1.50699 * 109.47271 * 184.23589 * 3 2 1 6 6 H 1.07997 * 119.99900 * 240.00425 * 5 3 2 7 7 C 1.37877 * 119.99866 * 59.99651 * 5 3 2 8 8 N 1.31511 * 120.00250 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99801 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46894 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47123 * 120.00011 * 9 7 5 12 12 H 1.48503 * 109.47262 * 240.00200 * 9 7 5 13 13 N 1.46898 * 109.47217 * 64.23226 * 3 2 1 14 14 C 1.46894 * 111.00011 * 205.72287 * 13 3 2 15 15 C 1.50705 * 109.46960 * 174.82397 * 14 13 3 16 16 C 1.38241 * 119.99713 * 90.00587 * 15 14 13 17 17 C 1.50703 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.38228 * 119.99744 * 179.73163 * 16 15 14 19 19 C 1.50704 * 119.99635 * 180.27374 * 18 16 15 20 20 C 1.38230 * 120.00329 * 0.24189 * 18 16 15 21 21 C 1.50704 * 120.00514 * 180.02562 * 20 18 16 22 22 C 1.38240 * 119.99886 * 0.02824 * 20 18 16 23 23 C 1.50699 * 120.00044 * 179.97438 * 22 20 18 24 24 C 1.38230 * 120.00072 * 359.95701 * 22 20 18 25 25 C 1.50697 * 120.00264 * 180.02562 * 24 22 20 26 26 H 1.08994 * 109.47125 * 294.83094 * 1 2 3 27 27 H 1.09000 * 109.46893 * 54.83599 * 1 2 3 28 28 H 1.09002 * 109.47020 * 174.83378 * 1 2 3 29 29 H 1.09004 * 109.46922 * 240.00465 * 2 1 3 30 30 H 1.08994 * 109.47404 * 120.00269 * 2 1 3 31 31 H 0.96999 * 119.99802 * 180.02562 * 8 7 5 32 32 H 1.00893 * 110.99537 * 81.77009 * 13 3 2 33 33 H 1.09002 * 109.47129 * 54.83153 * 14 13 3 34 34 H 1.08998 * 109.47301 * 294.82685 * 14 13 3 35 35 H 1.08997 * 109.47173 * 269.73048 * 17 16 15 36 36 H 1.09006 * 109.46500 * 149.73232 * 17 16 15 37 37 H 1.08996 * 109.47514 * 29.73601 * 17 16 15 38 38 H 1.09000 * 109.47149 * 89.99953 * 19 18 16 39 39 H 1.09007 * 109.46736 * 209.99552 * 19 18 16 40 40 H 1.08998 * 109.47309 * 329.98892 * 19 18 16 41 41 H 1.09000 * 109.47105 * 89.99675 * 21 20 18 42 42 H 1.08994 * 109.47188 * 210.00704 * 21 20 18 43 43 H 1.09006 * 109.46385 * 330.00595 * 21 20 18 44 44 H 1.09006 * 109.46889 * 89.99925 * 23 22 20 45 45 H 1.08993 * 109.47780 * 210.00063 * 23 22 20 46 46 H 1.08997 * 109.47519 * 330.00905 * 23 22 20 47 47 H 1.08997 * 109.47091 * 89.99332 * 25 24 22 48 48 H 1.09000 * 109.47473 * 210.00073 * 25 24 22 49 49 H 1.09002 * 109.46901 * 329.99597 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9778 -0.8497 5 6 3.5433 1.4439 -0.1049 6 1 4.1388 1.8919 0.6768 7 6 4.1585 0.8730 -1.1989 8 7 3.4334 0.3278 -2.1510 9 14 6.0221 0.8741 -1.3286 10 1 6.6008 1.5447 -0.1367 11 1 6.5142 -0.5252 -1.3976 12 1 6.4325 1.6043 -2.5548 13 7 1.6356 2.1049 1.2472 14 6 1.5423 3.5594 1.0646 15 6 1.0045 4.1903 2.3231 16 6 1.8740 4.6034 3.3152 17 6 3.3596 4.4223 3.1384 18 6 1.3810 5.1871 4.4672 19 6 2.3294 5.6430 5.5461 20 6 0.0184 5.3532 4.6293 21 6 -0.5191 5.9900 5.8850 22 6 -0.8515 4.9350 3.6396 23 6 -2.3371 5.1155 3.8166 24 6 -0.3585 4.3516 2.4875 25 6 -1.3067 3.8962 1.4083 26 1 -0.3633 0.4315 0.9326 27 1 -0.3633 0.5919 -0.8401 28 1 -0.3633 -1.0235 -0.0925 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8663 -0.0741 -2.9204 32 1 2.2668 1.8747 1.9999 33 1 0.8724 3.7790 0.2332 34 1 2.5319 3.9629 0.8501 35 1 3.6579 3.4536 3.5394 36 1 3.8879 5.2138 3.6701 37 1 3.6077 4.4687 2.0781 38 1 2.6175 6.6782 5.3629 39 1 1.8383 5.5689 6.5165 40 1 3.2179 5.0118 5.5394 41 1 -0.5886 7.0687 5.7442 42 1 -1.5084 5.5873 6.1019 43 1 0.1513 5.7748 6.7171 44 1 -2.6356 6.0843 3.4159 45 1 -2.8653 4.3241 3.2849 46 1 -2.5851 5.0690 4.8770 47 1 -1.4756 4.7118 0.7052 48 1 -0.8755 3.0452 0.8811 49 1 -2.2550 3.6021 1.8583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618387540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -19.843258 kcal Electronic energy + Delta-G solvation = -24059.107834 eV Core-core repulsion = 20984.069073 eV Total energy + Delta-G solvation = -3075.038761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17910 -38.10472 -35.81181 -35.73113 -33.89587 -32.51637 -30.53865 -30.03668 -29.14036 -28.18792 -26.76390 -24.98621 -24.88561 -23.82079 -21.41893 -20.31597 -20.22661 -18.75116 -17.70838 -16.82825 -16.15097 -15.90517 -15.44090 -15.36723 -14.96254 -14.58101 -14.52350 -14.34641 -14.09901 -13.99356 -13.79841 -13.56952 -13.46359 -13.40009 -13.18606 -13.14413 -13.04090 -12.98179 -12.80467 -12.63888 -12.51806 -12.41108 -12.09339 -11.89695 -11.78092 -11.56804 -11.48397 -11.45028 -11.22632 -10.94927 -10.46891 -9.18423 -9.03419 -8.94095 -8.05123 -6.27146 0.53019 0.55379 1.35797 1.38772 1.48396 2.39501 2.78338 3.14664 3.78873 3.91142 3.97858 4.08554 4.14677 4.22501 4.30285 4.53514 4.58070 4.64155 4.65211 4.71583 4.73295 4.75791 4.77362 4.79673 4.81787 4.83382 4.87491 4.92238 4.93798 5.01560 5.08183 5.12989 5.16684 5.21053 5.25393 5.31005 5.42582 5.51858 5.54715 5.61621 5.63724 5.77010 5.79142 5.82509 5.98783 6.10883 6.20456 6.31785 6.40225 6.80059 7.01137 7.44211 8.91376 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.004632 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.930695 B = 6043.353408 C = 7205.858964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.001 1.001 5 C -0.556 4.556 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.111 3.889 15 C -0.089 4.089 16 C -0.095 4.095 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.103 4.103 23 C -0.112 4.112 24 C -0.081 4.081 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 11.234 14.875 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.595 4.595 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.294 5.294 14 C -0.018 4.018 15 C -0.090 4.090 16 C -0.096 4.096 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.168 4.168 20 C -0.096 4.096 21 C -0.168 4.168 22 C -0.103 4.103 23 C -0.168 4.168 24 C -0.082 4.082 25 C -0.171 4.171 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.979 11.033 14.578 20.368 hybrid contribution 2.288 -0.130 -0.983 2.494 sum -6.690 10.903 13.595 18.667 Atomic orbital electron populations 1.21534 0.96412 0.99458 1.00530 1.21345 0.94378 0.98323 0.99897 1.18939 0.91568 0.91408 0.86607 0.98347 1.22178 0.93975 1.37655 1.05734 0.93262 1.25630 1.01959 0.94800 0.95446 1.70009 1.36304 1.38700 1.09949 0.85669 0.81307 0.77750 0.77868 1.19470 1.20554 1.20836 1.60859 1.54581 1.06109 1.07891 1.20621 0.97767 0.89093 0.94294 1.19621 0.93490 0.99899 0.95949 1.19742 0.95797 0.99772 0.94255 1.20819 0.91909 1.02306 1.01946 1.19794 0.94520 1.00237 0.95692 1.20867 0.97873 1.01478 0.96536 1.19870 0.92327 1.00093 0.97283 1.20917 1.01845 1.00500 0.93533 1.19844 0.97223 0.99762 0.93508 1.20901 0.89996 1.02592 1.03335 1.19704 0.93238 0.98850 0.96389 1.20850 0.98357 1.01136 0.96736 0.92618 0.94984 0.93808 0.92027 0.95581 0.92932 0.85852 0.92494 0.96089 0.91727 0.89911 0.92961 0.90569 0.89841 0.91610 0.90428 0.90357 0.90460 0.90544 0.91194 0.89987 0.91382 0.92281 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.33 16 2 C -0.10 -4.93 5.45 30.60 0.17 -4.77 16 3 C 0.22 11.31 1.98 44.17 0.09 11.40 16 4 H 0.00 -0.08 7.71 -2.38 -0.02 -0.10 16 5 C -0.56 -30.39 8.46 25.60 0.22 -30.17 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -52.34 11.30 21.45 0.24 -52.09 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.67 -28.82 5.67 -499.46 -2.83 -31.65 16 14 C 0.11 4.47 4.42 85.56 0.38 4.84 16 15 C -0.09 -3.10 5.44 -19.86 -0.11 -3.21 16 16 C -0.10 -3.01 5.88 -19.87 -0.12 -3.12 16 17 C -0.11 -3.41 8.79 71.24 0.63 -2.79 16 18 C -0.10 -2.72 5.88 -19.87 -0.12 -2.83 16 19 C -0.11 -2.17 8.79 71.24 0.63 -1.54 16 20 C -0.10 -2.34 5.88 -19.86 -0.12 -2.45 16 21 C -0.11 -1.82 9.20 71.24 0.66 -1.17 16 22 C -0.10 -2.71 5.88 -19.87 -0.12 -2.83 16 23 C -0.11 -2.12 9.20 71.24 0.66 -1.46 16 24 C -0.08 -2.54 5.88 -19.87 -0.12 -2.66 16 25 C -0.11 -3.31 8.78 71.23 0.63 -2.69 16 26 H 0.05 2.19 7.88 -2.39 -0.02 2.17 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 3.38 5.97 -2.38 -0.01 3.37 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.33 14.30 8.45 -89.70 -0.76 13.54 16 33 H 0.06 2.36 6.50 -2.39 -0.02 2.34 16 34 H 0.02 0.91 5.91 -2.39 -0.01 0.90 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.04 6.70 -2.38 -0.02 2.02 16 37 H 0.05 1.78 5.94 -2.39 -0.01 1.77 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.31 5.95 -2.38 -0.01 1.29 16 40 H 0.06 1.28 6.70 -2.39 -0.02 1.26 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.09 5.95 -2.39 -0.01 1.07 16 43 H 0.08 1.08 5.95 -2.38 -0.01 1.07 16 44 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.07 1.30 5.95 -2.39 -0.01 1.28 16 46 H 0.08 1.25 5.95 -2.39 -0.01 1.23 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 2.01 6.67 -2.39 -0.02 2.00 16 49 H 0.08 1.97 5.95 -2.39 -0.01 1.96 16 Total: -1.00 -60.96 368.04 4.12 -56.84 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.19 Total: 29.30 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 4.49 Total: -48.13 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.59 Total: -83.75 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -60.96 4.12 -56.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618387540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.999 kcal (2) G-P(sol) polarization free energy of solvation -60.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds