Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47298 * 2 1 4 4 C 1.38256 * 120.00270 * 270.02867 * 3 2 1 5 5 C 1.38209 * 119.99827 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99573 * 0.02917 * 6 5 4 8 8 C 1.50704 * 119.99938 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47187 * 269.95367 * 8 7 6 10 10 C 1.46899 * 110.99898 * 66.04590 * 9 8 7 11 11 C 1.50703 * 109.46995 * 63.43135 * 10 9 8 12 12 H 1.07996 * 119.99972 * 4.26985 * 11 10 9 13 13 C 1.37884 * 119.99536 * 184.26912 * 11 10 9 14 14 N 1.31512 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99638 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47211 * 89.99731 * 15 13 11 17 17 H 1.48493 * 109.46935 * 210.00111 * 15 13 11 18 18 H 1.48497 * 109.47038 * 330.00002 * 15 13 11 19 19 C 1.46894 * 110.99718 * 190.00192 * 9 8 7 20 20 C 1.53003 * 109.47179 * 163.67955 * 19 9 8 21 21 C 1.52995 * 109.47403 * 181.11067 * 20 19 9 22 22 C 1.52998 * 109.47143 * 174.99999 * 21 20 19 23 23 C 1.53001 * 109.47395 * 295.00202 * 21 20 19 24 24 C 1.38222 * 119.99724 * 89.99909 * 3 2 1 25 25 H 1.09003 * 109.46806 * 299.99689 * 1 2 3 26 26 H 1.08997 * 109.47224 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.46517 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47141 * 240.00740 * 2 1 3 29 29 H 1.09002 * 109.47572 * 120.00251 * 2 1 3 30 30 H 1.07994 * 119.99579 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99873 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.00626 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46886 * 29.95791 * 8 7 6 34 34 H 1.09002 * 109.46969 * 149.95089 * 8 7 6 35 35 H 1.09002 * 109.46951 * 183.43161 * 10 9 8 36 36 H 1.09000 * 109.47159 * 303.43268 * 10 9 8 37 37 H 0.96999 * 119.99098 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47303 * 283.67329 * 19 9 8 39 39 H 1.09000 * 109.47766 * 43.67807 * 19 9 8 40 40 H 1.08999 * 109.47203 * 301.11445 * 20 19 9 41 41 H 1.09007 * 109.47095 * 61.11079 * 20 19 9 42 42 H 1.09005 * 109.47050 * 55.00522 * 21 20 19 43 43 H 1.08999 * 109.47555 * 60.00148 * 22 21 20 44 44 H 1.09003 * 109.47492 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47536 * 300.00114 * 22 21 20 46 46 H 1.08993 * 109.46801 * 179.97438 * 23 21 20 47 47 H 1.08999 * 109.46724 * 299.99497 * 23 21 20 48 48 H 1.09001 * 109.47079 * 59.99552 * 23 21 20 49 49 H 1.07998 * 120.00016 * 359.72754 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7225 3.3760 -1.1972 6 6 2.9525 4.0280 0.0001 7 6 2.7228 3.3761 1.1971 8 6 2.9740 4.0865 2.5022 9 7 4.3613 3.8553 2.9265 10 6 5.3080 4.4863 1.9972 11 6 5.1128 5.9804 2.0189 12 1 4.4094 6.4232 2.7084 13 6 5.8324 6.7822 1.1583 14 7 6.6893 6.2430 0.3190 15 14 5.5909 8.6343 1.1856 16 1 6.5411 9.2432 2.1509 17 1 5.8409 9.1861 -0.1702 18 1 4.1988 8.9460 1.5979 19 6 4.5774 4.3283 4.3002 20 6 5.8703 3.7230 4.8506 21 6 6.0811 4.1937 6.2910 22 6 7.3049 3.4918 6.8830 23 6 6.3045 5.7072 6.3056 24 6 2.2627 2.0724 1.1971 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0822 1.5637 -2.1325 31 1 2.9017 3.8855 -2.1325 32 1 3.3118 5.0464 0.0002 33 1 2.8073 5.1557 2.3719 34 1 2.2929 3.7026 3.2618 35 1 6.3277 4.2486 2.3004 36 1 5.1320 4.1114 0.9890 37 1 7.1952 6.8070 -0.2866 38 1 4.6557 5.4155 4.3021 39 1 3.7384 4.0234 4.9258 40 1 5.7998 2.6355 4.8304 41 1 6.7119 4.0440 4.2367 42 1 5.2001 3.9507 6.8853 43 1 8.1859 3.7346 6.2889 44 1 7.4548 3.8267 7.9094 45 1 7.1458 2.4135 6.8728 46 1 6.4542 6.0425 7.3318 47 1 7.1855 5.9501 5.7115 48 1 5.4326 6.2073 5.8838 49 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641935659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = -7.450765 kcal Electronic energy + Delta-G solvation = -23613.053540 eV Core-core repulsion = 20538.552158 eV Total energy + Delta-G solvation = -3074.501382 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.12570 -37.35834 -35.42855 -33.71711 -32.46866 -31.01579 -29.13410 -28.24110 -26.93577 -26.80363 -24.41322 -23.60434 -23.13924 -21.42239 -20.32047 -19.32701 -19.25420 -16.44598 -15.82783 -15.27522 -14.96389 -14.75788 -14.74613 -14.48559 -13.88320 -13.56844 -13.53514 -13.18707 -12.78268 -12.74235 -12.68590 -12.23400 -12.17714 -11.86807 -11.66338 -11.38236 -11.35170 -11.19840 -11.07337 -10.93063 -10.84862 -10.58267 -10.52168 -10.44628 -10.30354 -10.17683 -9.93614 -9.87490 -9.74727 -9.50193 -8.42106 -8.21010 -8.00237 -7.08506 -6.00724 -4.09336 1.94762 1.99058 3.25684 3.33527 3.35385 4.29469 4.40089 5.00692 5.05670 5.11619 5.27547 5.29275 5.36239 5.43794 5.48791 5.51268 5.57690 5.68729 5.80032 5.87921 5.91312 5.92545 5.94332 6.00037 6.07472 6.13737 6.18517 6.20763 6.25913 6.26042 6.27517 6.43402 6.46752 6.51443 6.60156 6.63682 6.66902 6.77193 6.97690 7.01352 7.07912 7.13041 7.34274 7.38662 7.59028 7.64040 7.94725 8.11782 8.31319 8.37224 9.01538 9.56235 11.03458 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.005427 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.351437 B = 5158.004092 C = 7141.709502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.056 4.056 8 C 0.097 3.903 9 N -0.538 5.538 10 C 0.182 3.818 11 C -0.543 4.543 12 H 0.055 0.945 13 C 0.068 3.932 14 N -0.887 5.887 15 Si 0.880 3.120 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.059 3.941 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.041 0.959 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -8.176 4.229 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.098 4.098 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.056 4.056 8 C -0.031 4.031 9 N -0.261 5.261 10 C 0.057 3.943 11 C -0.582 4.582 12 H 0.073 0.927 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.708 3.292 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.069 4.069 20 C -0.142 4.142 21 C -0.112 4.112 22 C -0.202 4.202 23 C -0.204 4.204 24 C -0.123 4.123 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.251 -8.643 4.084 11.998 hybrid contribution -0.009 2.091 -0.153 2.097 sum -7.261 -6.551 3.931 10.540 Atomic orbital electron populations 1.21740 0.95313 1.01040 1.02092 1.20461 0.95663 0.93350 1.02269 1.19705 1.01017 0.95774 0.93352 1.20840 1.01785 0.95178 0.96874 1.21072 1.00148 0.94907 0.98060 1.21335 0.96944 1.01203 0.91606 1.19810 0.96802 0.93849 0.95180 1.20876 0.91422 0.98299 0.92460 1.62551 1.02775 1.58289 1.02483 1.19843 0.90933 0.91512 0.92035 1.21680 1.23470 0.93254 1.19816 0.92700 1.24902 0.95154 0.98046 0.95355 1.69949 1.25435 1.35157 1.22038 0.86782 0.78504 0.86535 0.77357 1.20689 1.21214 1.20009 1.22003 0.96033 0.99034 0.89851 1.21533 0.98829 0.99845 0.93948 1.21072 0.97609 0.95537 0.97029 1.21821 0.98400 0.99996 0.99942 1.21864 1.02557 0.95603 1.00364 1.20792 1.00344 0.94293 0.96840 0.92635 0.92777 0.92946 0.91615 0.91404 0.87221 0.86807 0.84973 0.93133 0.92530 0.95507 0.94110 0.92916 0.93121 0.93707 0.92475 0.91352 0.92054 0.92731 0.93413 0.93063 0.93843 0.92496 0.92236 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.16 0.37 -1.14 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.10 -1.51 5.13 -104.62 -0.54 -2.04 16 4 C -0.13 -2.01 9.70 -39.59 -0.38 -2.40 16 5 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 6 C -0.09 -1.83 7.91 -39.58 -0.31 -2.15 16 7 C -0.06 -1.06 4.89 -104.62 -0.51 -1.57 16 8 C 0.10 1.89 4.94 -4.97 -0.02 1.87 16 9 N -0.54 -11.29 4.66 -237.51 -1.11 -12.40 16 10 C 0.18 4.54 4.62 -4.97 -0.02 4.52 16 11 C -0.54 -14.19 7.17 -34.44 -0.25 -14.44 16 12 H 0.05 1.44 5.95 -52.49 -0.31 1.12 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 15 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.06 1.11 4.53 -3.83 -0.02 1.10 16 20 C -0.10 -1.80 4.71 -26.73 -0.13 -1.93 16 21 C -0.09 -1.35 2.92 -90.62 -0.26 -1.62 16 22 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 23 C -0.15 -2.19 8.95 37.16 0.33 -1.86 16 24 C -0.10 -1.75 9.36 -39.58 -0.37 -2.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.13 2.93 7.82 -52.49 -0.41 2.52 16 33 H 0.05 1.07 6.56 -51.93 -0.34 0.73 16 34 H 0.06 0.98 7.80 -51.93 -0.41 0.57 16 35 H 0.03 0.73 6.72 -51.93 -0.35 0.38 16 36 H 0.04 1.11 5.93 -51.93 -0.31 0.80 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.05 1.05 4.60 -51.93 -0.24 0.82 16 39 H 0.04 0.76 7.80 -51.93 -0.41 0.36 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.37 6.82 -51.93 -0.35 1.01 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.95 6.59 -51.93 -0.34 0.60 16 49 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -27.69 380.95 -11.03 -38.72 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.94 Total: 3.90 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -2.44 Total: -27.23 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.37 Total: -37.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.69 -11.03 -38.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641935659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.269 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds