Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47298 * 2 1 4 4 C 1.38256 * 120.00270 * 270.02867 * 3 2 1 5 5 C 1.38209 * 119.99827 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99573 * 0.02917 * 6 5 4 8 8 C 1.50704 * 119.99938 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47187 * 269.95367 * 8 7 6 10 10 C 1.46899 * 110.99898 * 66.04590 * 9 8 7 11 11 C 1.50703 * 109.46995 * 63.43135 * 10 9 8 12 12 H 1.07996 * 119.99972 * 4.26985 * 11 10 9 13 13 C 1.37884 * 119.99536 * 184.26912 * 11 10 9 14 14 N 1.31512 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99638 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47211 * 89.99731 * 15 13 11 17 17 H 1.48493 * 109.46935 * 210.00111 * 15 13 11 18 18 H 1.48497 * 109.47038 * 330.00002 * 15 13 11 19 19 C 1.46894 * 110.99718 * 190.00192 * 9 8 7 20 20 C 1.53003 * 109.47179 * 163.67955 * 19 9 8 21 21 C 1.52995 * 109.47403 * 181.11067 * 20 19 9 22 22 C 1.52998 * 109.47143 * 174.99999 * 21 20 19 23 23 C 1.53001 * 109.47395 * 295.00202 * 21 20 19 24 24 C 1.38222 * 119.99724 * 89.99909 * 3 2 1 25 25 H 1.09003 * 109.46806 * 299.99689 * 1 2 3 26 26 H 1.08997 * 109.47224 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.46517 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47141 * 240.00740 * 2 1 3 29 29 H 1.09002 * 109.47572 * 120.00251 * 2 1 3 30 30 H 1.07994 * 119.99579 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99873 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.00626 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46886 * 29.95791 * 8 7 6 34 34 H 1.09002 * 109.46969 * 149.95089 * 8 7 6 35 35 H 1.09002 * 109.46951 * 183.43161 * 10 9 8 36 36 H 1.09000 * 109.47159 * 303.43268 * 10 9 8 37 37 H 0.96999 * 119.99098 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47303 * 283.67329 * 19 9 8 39 39 H 1.09000 * 109.47766 * 43.67807 * 19 9 8 40 40 H 1.08999 * 109.47203 * 301.11445 * 20 19 9 41 41 H 1.09007 * 109.47095 * 61.11079 * 20 19 9 42 42 H 1.09005 * 109.47050 * 55.00522 * 21 20 19 43 43 H 1.08999 * 109.47555 * 60.00148 * 22 21 20 44 44 H 1.09003 * 109.47492 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47536 * 300.00114 * 22 21 20 46 46 H 1.08993 * 109.46801 * 179.97438 * 23 21 20 47 47 H 1.08999 * 109.46724 * 299.99497 * 23 21 20 48 48 H 1.09001 * 109.47079 * 59.99552 * 23 21 20 49 49 H 1.07998 * 120.00016 * 359.72754 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0728 -1.1973 5 6 2.7225 3.3760 -1.1972 6 6 2.9525 4.0280 0.0001 7 6 2.7228 3.3761 1.1971 8 6 2.9740 4.0865 2.5022 9 7 4.3613 3.8553 2.9265 10 6 5.3080 4.4863 1.9972 11 6 5.1128 5.9804 2.0189 12 1 4.4094 6.4232 2.7084 13 6 5.8324 6.7822 1.1583 14 7 6.6893 6.2430 0.3190 15 14 5.5909 8.6343 1.1856 16 1 6.5411 9.2432 2.1509 17 1 5.8409 9.1861 -0.1702 18 1 4.1988 8.9460 1.5979 19 6 4.5774 4.3283 4.3002 20 6 5.8703 3.7230 4.8506 21 6 6.0811 4.1937 6.2910 22 6 7.3049 3.4918 6.8830 23 6 6.3045 5.7072 6.3056 24 6 2.2627 2.0724 1.1971 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.0822 1.5637 -2.1325 31 1 2.9017 3.8855 -2.1325 32 1 3.3118 5.0464 0.0002 33 1 2.8073 5.1557 2.3719 34 1 2.2929 3.7026 3.2618 35 1 6.3277 4.2486 2.3004 36 1 5.1320 4.1114 0.9890 37 1 7.1952 6.8070 -0.2866 38 1 4.6557 5.4155 4.3021 39 1 3.7384 4.0234 4.9258 40 1 5.7998 2.6355 4.8304 41 1 6.7119 4.0440 4.2367 42 1 5.2001 3.9507 6.8853 43 1 8.1859 3.7346 6.2889 44 1 7.4548 3.8267 7.9094 45 1 7.1458 2.4135 6.8728 46 1 6.4542 6.0425 7.3318 47 1 7.1855 5.9501 5.7115 48 1 5.4326 6.2073 5.8838 49 1 2.0785 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641935659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = -20.071304 kcal Electronic energy + Delta-G solvation = -23613.600808 eV Core-core repulsion = 20538.552158 eV Total energy + Delta-G solvation = -3075.048650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52285 -38.87400 -36.79222 -34.93669 -34.45463 -32.43147 -30.38688 -29.74284 -28.71876 -27.97623 -26.13326 -24.86585 -24.63554 -22.76509 -21.74064 -20.85469 -20.59820 -18.46662 -17.23748 -16.90380 -16.49745 -16.29335 -16.11242 -15.93856 -15.36312 -14.87447 -14.68274 -14.37926 -14.33060 -14.14209 -13.92855 -13.82956 -13.54888 -13.10277 -13.06960 -12.87718 -12.77103 -12.69178 -12.53929 -12.46909 -12.26432 -12.09818 -11.96761 -11.90399 -11.65319 -11.60298 -11.51687 -11.40637 -11.26515 -11.19304 -10.55291 -9.58519 -9.38496 -8.90135 -8.10186 -6.27653 0.57904 0.62638 1.32986 1.34571 1.43227 2.36871 2.90572 3.14271 3.55650 3.91920 4.00951 4.03392 4.13341 4.17085 4.21238 4.38214 4.40516 4.47714 4.53432 4.61582 4.72075 4.75412 4.77616 4.82922 4.83900 4.85818 4.91787 4.96789 5.05169 5.11382 5.11776 5.15889 5.22668 5.24818 5.31647 5.35801 5.37092 5.40075 5.45674 5.47251 5.56823 5.62268 5.72925 5.80579 5.82951 5.93085 6.13352 6.27295 6.32578 6.62325 6.93144 7.41622 8.91202 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.005427 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.351437 B = 5158.004092 C = 7141.709502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.074 4.074 8 C 0.101 3.899 9 N -0.537 5.537 10 C 0.204 3.796 11 C -0.539 4.539 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.923 5.923 15 Si 0.941 3.059 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.060 3.940 20 C -0.096 4.096 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.108 4.108 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.025 0.975 34 H 0.085 0.915 35 H -0.005 1.005 36 H 0.015 0.985 37 H 0.262 0.738 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 -9.837 5.427 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.026 4.026 9 N -0.259 5.259 10 C 0.078 3.922 11 C -0.578 4.578 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.563 5.563 15 Si 0.767 3.233 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.068 4.068 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.198 4.198 23 C -0.203 4.203 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.140 0.860 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.013 0.987 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.888 -10.303 5.298 14.602 hybrid contribution 0.449 2.528 -0.539 2.623 sum -8.439 -7.775 4.760 12.423 Atomic orbital electron populations 1.21715 0.93882 1.02419 1.01843 1.20543 0.96754 0.90823 1.03449 1.20158 0.99089 0.97398 0.92511 1.21187 1.00454 0.94224 0.98550 1.21242 1.00303 0.96048 0.97499 1.21132 0.99358 1.00057 0.93411 1.19837 0.98115 0.95090 0.94389 1.20892 0.90739 0.97145 0.93866 1.62504 1.03004 1.57634 1.02801 1.19381 0.90270 0.91076 0.91517 1.21836 1.22716 0.94020 1.19196 0.92945 1.25630 0.94991 1.02309 0.95124 1.70071 1.26587 1.36667 1.22980 0.85807 0.78622 0.81451 0.77383 1.20139 1.20930 1.19368 1.22083 0.97901 0.97822 0.89017 1.21464 0.96540 0.99966 0.95438 1.21054 0.99403 0.95124 0.95110 1.21792 0.96861 1.00465 1.00718 1.21850 1.00889 0.96105 1.01423 1.20996 0.99909 0.93300 0.98431 0.93107 0.92870 0.90787 0.90154 0.90592 0.84131 0.85985 0.88830 0.95655 0.89685 0.98655 0.96721 0.92948 0.95302 0.90898 0.91913 0.95005 0.90015 0.93968 0.91295 0.92073 0.91230 0.94622 0.93679 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.08 -1.61 6.06 29.85 0.18 -1.43 16 3 C -0.09 -2.61 5.13 -19.86 -0.10 -2.71 16 4 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 5 C -0.13 -4.73 10.05 22.27 0.22 -4.51 16 6 C -0.12 -5.05 7.91 22.27 0.18 -4.88 16 7 C -0.07 -2.87 4.89 -19.86 -0.10 -2.96 16 8 C 0.10 4.01 4.94 85.56 0.42 4.43 16 9 N -0.54 -23.15 4.66 -905.36 -4.21 -27.37 16 10 C 0.20 10.78 4.62 85.56 0.40 11.17 16 11 C -0.54 -29.56 7.17 25.60 0.18 -29.37 16 12 H 0.05 2.86 5.95 -2.91 -0.02 2.84 16 13 C 0.02 1.06 5.46 84.66 0.46 1.52 16 14 N -0.92 -55.25 13.29 21.45 0.28 -54.96 16 15 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 C 0.06 2.26 4.53 86.31 0.39 2.65 16 20 C -0.10 -3.36 4.71 30.59 0.14 -3.22 16 21 C -0.09 -2.43 2.92 -10.80 -0.03 -2.46 16 22 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 23 C -0.15 -4.28 8.95 71.98 0.64 -3.63 16 24 C -0.11 -3.50 9.36 22.27 0.21 -3.29 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 29 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.09 4.55 7.82 -2.91 -0.02 4.53 16 33 H 0.03 1.12 6.56 -2.39 -0.02 1.10 16 34 H 0.08 2.84 7.80 -2.39 -0.02 2.82 16 35 H 0.00 -0.27 6.72 -2.39 -0.02 -0.29 16 36 H 0.01 0.85 5.93 -2.39 -0.01 0.84 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.03 1.23 4.60 -2.39 -0.01 1.22 16 39 H 0.07 2.36 7.80 -2.39 -0.02 2.34 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.33 6.82 -2.38 -0.02 1.31 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.04 1.43 6.59 -2.39 -0.02 1.42 16 49 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.05 380.95 3.77 -59.28 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.88 Total: 23.31 kcal Atomic # 6 Polarization: -51.43 SS G_CDS: 4.79 Total: -46.64 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.93 Total: -82.33 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.05 3.77 -59.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641935659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.206 kcal (2) G-P(sol) polarization free energy of solvation -63.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds