Wall clock time and date at job start Tue Mar 31 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38252 * 120.00091 * 2 1 4 4 C 1.38213 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99514 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99684 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47210 * 89.99929 * 6 5 4 8 8 C 1.46899 * 110.99841 * 190.00464 * 7 6 5 9 9 C 1.50706 * 109.47154 * 170.40083 * 8 7 6 10 10 H 1.08003 * 119.99472 * 355.52739 * 9 8 7 11 11 C 1.37873 * 120.00210 * 175.53321 * 9 8 7 12 12 N 1.31515 * 120.00208 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99839 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.46806 * 90.00585 * 13 11 9 15 15 H 1.48499 * 109.46865 * 210.00227 * 13 11 9 16 16 H 1.48504 * 109.47275 * 330.00324 * 13 11 9 17 17 C 1.46896 * 110.99819 * 66.04459 * 7 6 5 18 18 C 1.52999 * 109.47286 * 61.13399 * 17 7 6 19 19 C 1.52998 * 109.47376 * 174.43115 * 18 17 7 20 20 C 1.52995 * 109.47340 * 64.99558 * 19 18 17 21 21 C 1.52997 * 109.47152 * 184.99986 * 19 18 17 22 22 C 1.38207 * 120.00639 * 359.97438 * 5 4 3 23 23 C 1.38211 * 119.99645 * 179.72581 * 2 1 3 24 24 C 1.50701 * 120.00343 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.47011 * 90.00203 * 1 2 3 26 26 H 1.08999 * 109.47079 * 330.00089 * 1 2 3 27 27 H 1.09004 * 109.47084 * 209.99938 * 1 2 3 28 28 H 1.08003 * 119.99836 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.00147 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.47333 * 209.99928 * 6 5 4 31 31 H 1.09001 * 109.46656 * 329.99885 * 6 5 4 32 32 H 1.09004 * 109.46540 * 290.39310 * 8 7 6 33 33 H 1.08994 * 109.47451 * 50.39202 * 8 7 6 34 34 H 0.96993 * 119.99985 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46915 * 181.12633 * 17 7 6 36 36 H 1.08997 * 109.47677 * 301.12561 * 17 7 6 37 37 H 1.09006 * 109.46892 * 294.42842 * 18 17 7 38 38 H 1.09001 * 109.47036 * 54.42100 * 18 17 7 39 39 H 1.09004 * 109.46496 * 304.99271 * 19 18 17 40 40 H 1.09000 * 109.46954 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.47139 * 300.00127 * 20 19 18 42 42 H 1.08995 * 109.47103 * 60.00023 * 20 19 18 43 43 H 1.08996 * 109.47397 * 59.99258 * 21 19 18 44 44 H 1.08999 * 109.47225 * 179.97438 * 21 19 18 45 45 H 1.09004 * 109.46878 * 299.99632 * 21 19 18 46 46 H 1.08000 * 120.00394 * 180.02562 * 22 5 4 47 47 H 1.08999 * 109.47339 * 89.99856 * 24 23 2 48 48 H 1.09003 * 109.47380 * 210.00089 * 24 23 2 49 49 H 1.09005 * 109.46917 * 329.99999 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0017 7 7 6.2673 -0.0008 1.3871 8 6 7.7161 0.2374 1.4344 9 6 8.1415 0.4644 2.8622 10 1 7.4000 0.5066 3.6463 11 6 9.4772 0.6183 3.1674 12 7 9.8484 0.8168 4.4134 13 14 10.7597 0.5448 1.8112 14 1 10.9826 1.9080 1.2664 15 1 12.0337 0.0177 2.3628 16 1 10.2822 -0.3499 0.7263 17 6 5.9173 -1.2543 2.0682 18 6 6.5726 -2.4302 1.3409 19 6 6.3239 -3.7188 2.1272 20 6 4.8262 -4.0311 2.1341 21 6 7.0825 -4.8727 1.4685 22 6 3.5807 -1.1970 0.0005 23 6 2.1980 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0126 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 6.1425 -0.8899 -0.5122 31 1 6.1424 0.8901 -0.5115 32 1 8.2401 -0.6299 1.0327 33 1 7.9594 1.1170 0.8385 34 1 10.7881 0.9247 4.6281 35 1 6.2733 -1.2201 3.0978 36 1 4.8347 -1.3812 2.0622 37 1 6.1438 -2.5248 0.3432 38 1 7.6454 -2.2550 1.2601 39 1 6.6734 -3.5923 3.1519 40 1 4.6490 -4.9490 2.6947 41 1 4.2857 -3.2090 2.6035 42 1 4.4767 -4.1575 1.1095 43 1 8.1495 -4.6502 1.4636 44 1 6.9056 -5.7907 2.0289 45 1 6.7330 -4.9992 0.4438 46 1 4.1206 -2.1324 0.0010 47 1 1.2624 -2.8219 -1.0134 48 1 2.0338 -3.2592 0.5300 49 1 0.4923 -2.3691 0.5261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644736660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:53 Heat of formation + Delta-G solvation = 2.400152 kcal Electronic energy + Delta-G solvation = -24036.827028 eV Core-core repulsion = 20962.752814 eV Total energy + Delta-G solvation = -3074.074215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70142 -37.78391 -35.31897 -33.47365 -32.36288 -31.91797 -28.81115 -28.71679 -27.15372 -26.95139 -26.04078 -24.08531 -22.69760 -21.93096 -20.23845 -19.90403 -18.88680 -16.73416 -15.79089 -15.69976 -15.31440 -14.82999 -14.60009 -14.44497 -14.11498 -14.07109 -13.47254 -13.14605 -12.94814 -12.81539 -12.72356 -12.58236 -12.45133 -12.39859 -12.09524 -11.92762 -11.67636 -11.57895 -11.33690 -11.14295 -10.97890 -10.80626 -10.65211 -10.59755 -10.47445 -10.34660 -10.13499 -9.82936 -9.76028 -9.24168 -8.54717 -8.50798 -8.21787 -7.22848 -6.02891 -3.99424 1.56008 1.61871 3.28628 3.36221 3.37360 3.90923 4.43087 4.88010 4.89078 4.98557 5.09398 5.12267 5.17768 5.22414 5.27342 5.29855 5.33094 5.44503 5.48429 5.63455 5.72100 5.75261 5.76342 5.79101 5.81010 5.87337 5.89878 5.98309 6.00791 6.04286 6.12448 6.14851 6.23478 6.31465 6.35948 6.39270 6.50057 6.57325 6.65947 6.67746 6.80451 6.87280 6.97459 7.02853 7.11643 7.25914 7.63128 7.94769 8.10584 8.69338 9.06948 9.59229 11.10376 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.004992 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.246691 B = 5607.873893 C = 6844.136928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.062 4.062 6 C 0.083 3.917 7 N -0.518 5.518 8 C 0.156 3.844 9 C -0.503 4.503 10 H 0.080 0.920 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.063 3.937 18 C -0.152 4.152 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.092 4.092 24 C -0.115 4.115 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.036 0.964 31 H 0.073 0.927 32 H -0.003 1.003 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.119 0.881 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 -7.316 -10.301 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.062 4.062 6 C -0.045 4.045 7 N -0.240 5.240 8 C 0.030 3.970 9 C -0.541 4.541 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.065 4.065 18 C -0.191 4.191 19 C -0.112 4.112 20 C -0.202 4.202 21 C -0.202 4.202 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.171 4.171 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.014 0.986 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.137 0.863 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.572 -6.877 -9.933 19.709 hybrid contribution 1.378 -0.569 -1.047 1.822 sum -14.195 -7.447 -10.980 19.429 Atomic orbital electron populations 1.20807 0.91862 1.02493 1.01804 1.19647 0.95513 0.92813 1.01918 1.20941 0.94227 0.97093 1.01510 1.21009 0.93726 0.97927 0.99336 1.19860 0.95687 0.92860 0.97803 1.21104 0.90261 1.00767 0.92372 1.62217 1.16983 1.33254 1.11571 1.20272 0.83061 0.94954 0.98671 1.21004 0.92969 1.48364 0.91806 0.90173 1.24873 0.98220 0.95012 0.95100 1.69890 1.16566 1.50086 1.17501 0.86930 0.81580 0.78770 0.82892 1.20220 1.21287 1.19253 1.22153 0.98627 0.86184 0.99544 1.22293 1.02463 0.95525 0.98777 1.21037 0.95145 0.94713 1.00307 1.21884 0.96272 1.01045 1.01009 1.21831 1.00401 0.97909 1.00072 1.20969 0.93215 0.97811 1.00892 1.19639 0.93611 0.94572 1.01355 1.20823 0.99985 0.94435 1.01855 0.91685 0.91936 0.91471 0.86557 0.86073 0.94587 0.90833 0.98563 0.96129 0.92746 0.89694 0.92025 0.93083 0.91070 0.90876 0.93357 0.92285 0.93334 0.92790 0.93233 0.93313 0.86333 0.91655 0.91734 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.61 36.01 0.35 -0.70 16 2 C -0.10 -1.22 5.88 -104.62 -0.62 -1.84 16 3 C -0.12 -1.57 9.70 -39.59 -0.38 -1.96 16 4 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 5 C -0.06 -0.97 4.89 -104.62 -0.51 -1.48 16 6 C 0.08 1.44 4.89 -4.97 -0.02 1.41 16 7 N -0.52 -10.72 4.70 -237.52 -1.12 -11.84 16 8 C 0.16 3.73 3.61 -4.97 -0.02 3.72 16 9 C -0.50 -14.14 8.93 -34.44 -0.31 -14.44 16 10 H 0.08 2.48 7.51 -52.48 -0.39 2.08 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 13 Si 0.87 21.42 27.56 -169.99 -4.68 16.74 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.33 6.42 56.52 0.36 -5.97 16 17 C 0.06 1.20 4.37 -3.83 -0.02 1.18 16 18 C -0.15 -2.56 3.89 -26.73 -0.10 -2.67 16 19 C -0.09 -1.36 2.92 -90.62 -0.26 -1.62 16 20 C -0.14 -1.81 8.95 37.15 0.33 -1.48 16 21 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 22 C -0.11 -1.57 7.60 -39.58 -0.30 -1.87 16 23 C -0.09 -1.17 5.88 -104.62 -0.62 -1.78 16 24 C -0.11 -1.12 9.60 36.01 0.35 -0.78 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.56 5.94 -51.93 -0.31 0.25 16 28 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.04 0.60 6.10 -51.93 -0.32 0.29 16 31 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 32 H 0.00 -0.08 4.74 -51.93 -0.25 -0.32 16 33 H 0.02 0.50 7.59 -51.93 -0.39 0.10 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 1.86 6.85 -51.93 -0.36 1.51 16 36 H 0.06 1.09 4.79 -51.93 -0.25 0.84 16 37 H 0.05 0.80 5.47 -51.93 -0.28 0.52 16 38 H 0.07 1.39 6.09 -51.93 -0.32 1.08 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.77 6.69 -51.93 -0.35 0.43 16 42 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.12 1.63 6.53 -52.49 -0.34 1.28 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 49 H 0.07 0.58 5.94 -51.93 -0.31 0.27 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -30.06 369.55 -10.24 -40.29 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.50 Total: 1.86 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.28 Total: -25.85 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.34 Total: -38.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.68 Total: 16.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.06 -10.24 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644736660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.691 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds