Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38252 * 120.00091 * 2 1 4 4 C 1.38213 * 120.00091 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99514 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99684 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47210 * 89.99929 * 6 5 4 8 8 C 1.46899 * 110.99841 * 190.00464 * 7 6 5 9 9 C 1.50706 * 109.47154 * 170.40083 * 8 7 6 10 10 H 1.08003 * 119.99472 * 355.52739 * 9 8 7 11 11 C 1.37873 * 120.00210 * 175.53321 * 9 8 7 12 12 N 1.31515 * 120.00208 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99839 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.46806 * 90.00585 * 13 11 9 15 15 H 1.48499 * 109.46865 * 210.00227 * 13 11 9 16 16 H 1.48504 * 109.47275 * 330.00324 * 13 11 9 17 17 C 1.46896 * 110.99819 * 66.04459 * 7 6 5 18 18 C 1.52999 * 109.47286 * 61.13399 * 17 7 6 19 19 C 1.52998 * 109.47376 * 174.43115 * 18 17 7 20 20 C 1.52995 * 109.47340 * 64.99558 * 19 18 17 21 21 C 1.52997 * 109.47152 * 184.99986 * 19 18 17 22 22 C 1.38207 * 120.00639 * 359.97438 * 5 4 3 23 23 C 1.38211 * 119.99645 * 179.72581 * 2 1 3 24 24 C 1.50701 * 120.00343 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.47011 * 90.00203 * 1 2 3 26 26 H 1.08999 * 109.47079 * 330.00089 * 1 2 3 27 27 H 1.09004 * 109.47084 * 209.99938 * 1 2 3 28 28 H 1.08003 * 119.99836 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.00147 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.47333 * 209.99928 * 6 5 4 31 31 H 1.09001 * 109.46656 * 329.99885 * 6 5 4 32 32 H 1.09004 * 109.46540 * 290.39310 * 8 7 6 33 33 H 1.08994 * 109.47451 * 50.39202 * 8 7 6 34 34 H 0.96993 * 119.99985 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.46915 * 181.12633 * 17 7 6 36 36 H 1.08997 * 109.47677 * 301.12561 * 17 7 6 37 37 H 1.09006 * 109.46892 * 294.42842 * 18 17 7 38 38 H 1.09001 * 109.47036 * 54.42100 * 18 17 7 39 39 H 1.09004 * 109.46496 * 304.99271 * 19 18 17 40 40 H 1.09000 * 109.46954 * 180.02562 * 20 19 18 41 41 H 1.09006 * 109.47139 * 300.00127 * 20 19 18 42 42 H 1.08995 * 109.47103 * 60.00023 * 20 19 18 43 43 H 1.08996 * 109.47397 * 59.99258 * 21 19 18 44 44 H 1.08999 * 109.47225 * 179.97438 * 21 19 18 45 45 H 1.09004 * 109.46878 * 299.99632 * 21 19 18 46 46 H 1.08000 * 120.00394 * 180.02562 * 22 5 4 47 47 H 1.08999 * 109.47339 * 89.99856 * 24 23 2 48 48 H 1.09003 * 109.47380 * 210.00089 * 24 23 2 49 49 H 1.09005 * 109.46917 * 329.99999 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0002 0.0017 7 7 6.2673 -0.0008 1.3871 8 6 7.7161 0.2374 1.4344 9 6 8.1415 0.4644 2.8622 10 1 7.4000 0.5066 3.6463 11 6 9.4772 0.6183 3.1674 12 7 9.8484 0.8168 4.4134 13 14 10.7597 0.5448 1.8112 14 1 10.9826 1.9080 1.2664 15 1 12.0337 0.0177 2.3628 16 1 10.2822 -0.3499 0.7263 17 6 5.9173 -1.2543 2.0682 18 6 6.5726 -2.4302 1.3409 19 6 6.3239 -3.7188 2.1272 20 6 4.8262 -4.0311 2.1341 21 6 7.0825 -4.8727 1.4685 22 6 3.5807 -1.1970 0.0005 23 6 2.1980 -1.1970 0.0057 24 6 1.4445 -2.5021 0.0126 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 6.1425 -0.8899 -0.5122 31 1 6.1424 0.8901 -0.5115 32 1 8.2401 -0.6299 1.0327 33 1 7.9594 1.1170 0.8385 34 1 10.7881 0.9247 4.6281 35 1 6.2733 -1.2201 3.0978 36 1 4.8347 -1.3812 2.0622 37 1 6.1438 -2.5248 0.3432 38 1 7.6454 -2.2550 1.2601 39 1 6.6734 -3.5923 3.1519 40 1 4.6490 -4.9490 2.6947 41 1 4.2857 -3.2090 2.6035 42 1 4.4767 -4.1575 1.1095 43 1 8.1495 -4.6502 1.4636 44 1 6.9056 -5.7907 2.0289 45 1 6.7330 -4.9992 0.4438 46 1 4.1206 -2.1324 0.0010 47 1 1.2624 -2.8219 -1.0134 48 1 2.0338 -3.2592 0.5300 49 1 0.4923 -2.3691 0.5261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644736660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = -13.515082 kcal Electronic energy + Delta-G solvation = -24037.517165 eV Core-core repulsion = 20962.752814 eV Total energy + Delta-G solvation = -3074.764351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83562 -39.16821 -36.60084 -34.98706 -34.04900 -32.97740 -30.44013 -30.05013 -28.25220 -27.98674 -27.32251 -25.35213 -24.46169 -22.94684 -21.72255 -21.05951 -20.26425 -18.87665 -16.99070 -16.93872 -16.66422 -16.39036 -15.89604 -15.74520 -15.62205 -14.99272 -14.79359 -14.50798 -14.30936 -14.19495 -13.84538 -13.72825 -13.52047 -13.48346 -13.19221 -13.13112 -12.91118 -12.75207 -12.63637 -12.47565 -12.38590 -12.28966 -12.08180 -11.93494 -11.78717 -11.69264 -11.59027 -11.36550 -11.32106 -11.22019 -10.76711 -9.55748 -9.27463 -8.84851 -8.27492 -6.29633 0.49517 0.57597 1.32693 1.33661 1.43863 2.33330 2.81278 3.06157 3.46840 3.88491 3.89044 3.96694 4.02418 4.09218 4.15706 4.20763 4.30326 4.38435 4.46414 4.61209 4.64822 4.66837 4.72866 4.78360 4.78978 4.82277 4.82971 4.88215 4.93954 4.95119 4.98830 5.01961 5.09466 5.10773 5.11688 5.20700 5.29382 5.34474 5.39976 5.45282 5.51938 5.53380 5.56244 5.63732 5.82969 5.84825 6.01492 6.24446 6.41729 6.68123 6.76193 7.33458 8.89439 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.004992 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.246691 B = 5607.873893 C = 6844.136928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.083 4.083 6 C 0.088 3.912 7 N -0.536 5.536 8 C 0.168 3.832 9 C -0.507 4.507 10 H 0.033 0.967 11 C 0.011 3.989 12 N -0.949 5.949 13 Si 0.942 3.058 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.251 1.251 17 C 0.074 3.926 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.113 4.113 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.000 1.000 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.123 0.877 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.405 -8.913 -12.746 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.084 4.084 6 C -0.039 4.039 7 N -0.259 5.259 8 C 0.041 3.959 9 C -0.545 4.545 10 H 0.052 0.948 11 C -0.186 4.186 12 N -0.590 5.590 13 Si 0.765 3.235 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.175 1.175 17 C -0.054 4.054 18 C -0.179 4.179 19 C -0.114 4.114 20 C -0.195 4.195 21 C -0.198 4.198 22 C -0.136 4.136 23 C -0.096 4.096 24 C -0.170 4.170 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.017 0.983 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.141 0.859 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.481 -8.480 -12.390 23.043 hybrid contribution 1.810 -0.042 -0.216 1.823 sum -15.671 -8.522 -12.606 21.842 Atomic orbital electron populations 1.20873 0.89344 1.03548 1.03045 1.20089 0.97418 0.92324 1.00235 1.21207 0.93587 0.98550 1.01006 1.21107 0.94829 0.97562 1.00397 1.19758 0.94493 0.93981 1.00139 1.21075 0.91781 1.01016 0.90013 1.62085 1.14880 1.34620 1.14301 1.19999 0.85351 0.94905 0.95602 1.21187 0.92352 1.47935 0.93061 0.94824 1.25774 1.00653 0.94539 0.97678 1.70049 1.17272 1.51668 1.20020 0.85797 0.78294 0.79525 0.79850 1.19087 1.20792 1.17450 1.21982 0.99435 0.86666 0.97333 1.22156 1.00214 0.95772 0.99764 1.21033 0.97297 0.94300 0.98721 1.21816 0.94011 1.01399 1.02271 1.21790 0.99269 0.97674 1.01036 1.21059 0.94140 0.97260 1.01120 1.20020 0.93213 0.96218 1.00126 1.20886 1.00255 0.92764 1.03055 0.90199 0.91181 0.90200 0.84695 0.86672 0.93811 0.90972 0.98293 0.96002 0.92541 0.93955 0.90482 0.91210 0.94033 0.93273 0.91644 0.93367 0.91638 0.94118 0.91465 0.91793 0.85917 0.90198 0.91364 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.61 71.24 0.68 -0.99 16 2 C -0.10 -2.23 5.88 -19.87 -0.12 -2.35 16 3 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 4 C -0.12 -3.56 9.70 22.27 0.22 -3.34 16 5 C -0.08 -2.57 4.89 -19.87 -0.10 -2.67 16 6 C 0.09 3.07 4.89 85.56 0.42 3.48 16 7 N -0.54 -22.88 4.70 -905.36 -4.25 -27.13 16 8 C 0.17 8.23 3.61 85.56 0.31 8.54 16 9 C -0.51 -29.93 8.93 25.60 0.23 -29.70 16 10 H 0.03 2.24 7.51 -2.91 -0.02 2.22 16 11 C 0.01 0.63 5.47 84.65 0.46 1.09 16 12 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 13 Si 0.94 44.79 27.56 68.60 1.89 46.68 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.25 -11.14 6.42 99.48 0.64 -10.50 16 17 C 0.07 2.90 4.37 86.30 0.38 3.28 16 18 C -0.14 -4.75 3.89 30.59 0.12 -4.63 16 19 C -0.09 -2.71 2.92 -10.80 -0.03 -2.74 16 20 C -0.14 -3.16 8.95 71.98 0.64 -2.52 16 21 C -0.14 -3.41 9.19 71.98 0.66 -2.75 16 22 C -0.12 -3.15 7.60 22.27 0.17 -2.98 16 23 C -0.10 -2.19 5.88 -19.86 -0.12 -2.31 16 24 C -0.11 -1.81 9.60 71.24 0.68 -1.12 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 27 H 0.08 1.01 5.94 -2.38 -0.01 0.99 16 28 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.04 1.43 6.10 -2.39 -0.01 1.42 16 31 H 0.07 2.47 7.88 -2.39 -0.02 2.45 16 32 H 0.00 -0.02 4.74 -2.38 -0.01 -0.03 16 33 H 0.02 1.06 7.59 -2.39 -0.02 1.05 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.04 2.00 6.85 -2.39 -0.02 1.98 16 36 H 0.08 2.77 4.79 -2.39 -0.01 2.76 16 37 H 0.07 2.09 5.47 -2.38 -0.01 2.08 16 38 H 0.04 1.65 6.09 -2.39 -0.01 1.63 16 39 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.20 6.69 -2.38 -0.02 1.19 16 42 H 0.06 1.29 7.90 -2.39 -0.02 1.27 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.12 3.10 6.53 -2.91 -0.02 3.08 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 49 H 0.08 1.07 5.94 -2.38 -0.01 1.06 16 Total: -1.00 -68.21 369.55 3.61 -64.60 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.84 Total: 20.48 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 4.83 Total: -44.60 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.95 Total: -87.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.89 Total: 46.68 kcal Total: -68.21 3.61 -64.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644736660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.088 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds