Wall clock time and date at job start Tue Mar 31 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 119.99834 * 2 1 4 4 C 1.38233 * 119.99953 * 179.72822 * 3 2 1 5 5 C 1.38239 * 120.00017 * 0.27044 * 4 3 2 6 6 C 1.38233 * 119.99899 * 359.96538 * 5 4 3 7 7 C 1.50700 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.38235 * 120.00220 * 180.18949 * 2 1 3 9 9 C 1.50693 * 120.00041 * 0.02562 * 8 2 1 10 10 N 1.46901 * 109.47511 * 76.70562 * 9 8 2 11 11 C 1.46905 * 111.00005 * 77.49284 * 10 9 8 12 12 C 1.50706 * 109.47116 * 283.20380 * 11 10 9 13 13 H 1.07998 * 120.00123 * 359.61604 * 12 11 10 14 14 C 1.37869 * 119.99746 * 179.62536 * 12 11 10 15 15 N 1.31511 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00100 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47236 * 90.00344 * 16 14 12 18 18 H 1.48504 * 109.47052 * 209.99917 * 16 14 12 19 19 H 1.48497 * 109.47254 * 330.00124 * 16 14 12 20 20 C 1.46898 * 111.00334 * 201.45185 * 10 9 8 21 21 C 1.53003 * 109.46917 * 163.65122 * 20 10 9 22 22 C 1.53008 * 109.46805 * 185.54184 * 21 20 10 23 23 C 1.53002 * 109.47122 * 64.99669 * 22 21 20 24 24 C 1.52999 * 109.46809 * 184.99932 * 22 21 20 25 25 H 1.08997 * 109.46592 * 95.70238 * 1 2 3 26 26 H 1.08998 * 109.47013 * 215.70395 * 1 2 3 27 27 H 1.08998 * 109.46899 * 335.70658 * 1 2 3 28 28 H 1.07999 * 120.00196 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00123 * 180.25356 * 4 3 2 30 30 H 1.07997 * 120.00192 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47345 * 87.47786 * 7 6 5 32 32 H 1.09006 * 109.47193 * 207.47410 * 7 6 5 33 33 H 1.08996 * 109.47457 * 327.47715 * 7 6 5 34 34 H 1.08999 * 109.47250 * 196.70419 * 9 8 2 35 35 H 1.09005 * 109.47372 * 316.70782 * 9 8 2 36 36 H 1.08996 * 109.46736 * 43.20282 * 11 10 9 37 37 H 1.08999 * 109.47195 * 163.20044 * 11 10 9 38 38 H 0.96997 * 120.00855 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46826 * 283.64676 * 20 10 9 40 40 H 1.09000 * 109.47015 * 43.65041 * 20 10 9 41 41 H 1.08998 * 109.47233 * 305.53276 * 21 20 10 42 42 H 1.08995 * 109.47376 * 65.54175 * 21 20 10 43 43 H 1.09003 * 109.46728 * 304.99506 * 22 21 20 44 44 H 1.08989 * 109.46903 * 299.99819 * 23 22 21 45 45 H 1.08993 * 109.46944 * 60.00305 * 23 22 21 46 46 H 1.09005 * 109.46624 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47076 * 60.00264 * 24 22 21 48 48 H 1.09005 * 109.47066 * 179.97438 * 24 22 21 49 49 H 1.08993 * 109.47402 * 299.99783 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0057 5 6 4.2717 0.0001 0.0057 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5021 0.0014 8 6 2.1982 -1.1971 -0.0040 9 6 1.4448 -2.5022 -0.0089 10 7 0.9247 -2.7624 -1.3578 11 6 1.9872 -3.2517 -2.2465 12 6 2.8583 -2.0975 -2.6710 13 1 2.6403 -1.0993 -2.3212 14 6 3.9333 -2.3160 -3.5062 15 7 4.6932 -1.3088 -3.8772 16 14 4.3105 -4.0428 -4.1108 17 1 3.5882 -4.2901 -5.3846 18 1 5.7719 -4.1802 -4.3358 19 1 3.8713 -5.0307 -3.0929 20 6 -0.2016 -3.7045 -1.3152 21 6 -0.9685 -3.6427 -2.6377 22 6 -2.2190 -4.5193 -2.5435 23 6 -3.1711 -3.9387 -1.4958 24 6 -2.9190 -4.5570 -3.9035 25 1 -0.3632 -0.1021 -1.0226 26 1 -0.3633 -0.8345 0.5997 27 1 -0.3633 0.9367 0.4228 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1326 0.0098 30 1 5.3517 0.0001 0.0097 31 1 4.5509 -2.7961 1.0284 32 1 3.7281 -3.2718 -0.4766 33 1 5.2684 -2.3826 -0.5472 34 1 2.1155 -3.3100 0.2839 35 1 0.6150 -2.4454 0.6957 36 1 2.5922 -3.9883 -1.7179 37 1 1.5405 -3.7131 -3.1272 38 1 5.4497 -1.4625 -4.4644 39 1 0.1761 -4.7154 -1.1612 40 1 -0.8684 -3.4368 -0.4956 41 1 -1.2615 -2.6125 -2.8400 42 1 -0.3313 -4.0043 -3.4446 43 1 -1.9329 -5.5304 -2.2539 44 1 -2.6724 -3.9119 -0.5270 45 1 -3.4571 -2.9277 -1.7854 46 1 -4.0621 -4.5630 -1.4290 47 1 -2.2407 -4.9707 -4.6498 48 1 -3.8096 -5.1819 -3.8365 49 1 -3.2050 -3.5460 -4.1931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652627776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:53 Heat of formation + Delta-G solvation = 11.308846 kcal Electronic energy + Delta-G solvation = -24669.618061 eV Core-core repulsion = 21595.930156 eV Total energy + Delta-G solvation = -3073.687905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.24638 -37.34400 -35.42525 -32.90326 -32.21682 -31.65824 -28.93639 -28.03447 -27.07067 -26.43914 -25.78721 -24.18602 -22.51296 -20.69885 -19.84756 -19.59471 -19.41139 -16.77249 -15.54155 -15.45287 -15.06537 -14.75485 -14.28973 -14.05235 -13.76617 -13.53604 -13.41149 -12.84854 -12.71627 -12.43029 -12.32678 -12.26343 -12.12221 -12.07422 -11.94884 -11.74789 -11.57133 -11.21807 -11.14965 -10.87820 -10.73980 -10.60054 -10.54238 -10.45291 -10.27885 -10.06569 -9.98683 -9.86677 -9.69080 -9.18633 -8.45030 -7.63528 -7.52023 -7.28589 -5.90831 -3.84052 2.27859 2.32473 3.29954 3.37661 3.40036 4.46605 4.50304 4.86979 5.06763 5.09738 5.23820 5.38779 5.51100 5.57318 5.63907 5.68401 5.73577 5.78043 5.83288 5.86317 5.87436 5.93983 5.98177 6.01407 6.08856 6.12245 6.22013 6.25948 6.26769 6.30727 6.35633 6.39638 6.44201 6.49543 6.59681 6.60349 6.76496 6.77485 6.88373 6.98373 7.02068 7.17844 7.35161 7.43782 7.62956 7.73367 7.94526 7.99337 8.10280 8.79002 9.27721 9.71022 11.21294 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.007149 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.318262 B = 3915.688032 C = 5535.831025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.025 4.025 7 C -0.110 4.110 8 C -0.051 4.051 9 C 0.101 3.899 10 N -0.520 5.520 11 C 0.158 3.842 12 C -0.488 4.488 13 H 0.093 0.907 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.855 3.145 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.270 1.270 20 C 0.054 3.946 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.062 0.938 36 H -0.012 1.012 37 H 0.021 0.979 38 H 0.258 0.742 39 H 0.019 0.981 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -2.720 7.945 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.025 4.025 7 C -0.167 4.167 8 C -0.052 4.052 9 C -0.026 4.026 10 N -0.243 5.243 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.111 0.889 14 C -0.128 4.128 15 N -0.535 5.535 16 Si 0.683 3.317 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.195 1.195 20 C -0.074 4.074 21 C -0.146 4.146 22 C -0.116 4.116 23 C -0.203 4.203 24 C -0.203 4.203 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.006 0.994 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.852 -2.252 7.640 12.669 hybrid contribution 0.829 -1.659 -0.491 1.918 sum -9.023 -3.910 7.149 12.157 Atomic orbital electron populations 1.20635 0.92160 1.00352 1.02396 1.19462 0.95280 0.92497 0.99836 1.20706 0.94105 0.96708 1.04364 1.20825 0.94193 0.97282 1.01408 1.20738 0.98901 0.92197 1.02094 1.19397 0.92891 0.94729 0.95506 1.20856 1.00701 0.95808 0.99292 1.19142 0.92565 0.93734 0.99722 1.20937 0.96640 0.94314 0.90711 1.61953 1.09369 1.44486 1.08504 1.20378 0.89075 0.95892 0.91425 1.21169 1.08716 0.95504 1.27216 0.88910 1.24797 0.96415 0.95310 0.96288 1.69891 1.17794 1.29973 1.35861 0.87200 0.77563 0.87196 0.79787 1.20543 1.21475 1.19515 1.22152 0.93605 0.93972 0.97667 1.21615 0.94895 1.00318 0.97746 1.21110 0.95718 0.99451 0.95315 1.21871 0.98609 1.00786 0.99008 1.21817 0.99853 1.01631 0.96950 0.90841 0.92492 0.93427 0.87597 0.87552 0.87436 0.93623 0.90391 0.91850 0.94468 0.91952 0.99424 0.96110 0.93145 0.96286 0.91842 0.91036 0.91888 0.91847 0.92551 0.92648 0.93467 0.92818 0.93276 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.47 36.01 0.34 -1.22 16 2 C -0.07 -1.32 5.85 -104.62 -0.61 -1.94 16 3 C -0.14 -2.60 9.68 -39.58 -0.38 -2.98 16 4 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 5 C -0.12 -2.46 9.71 -39.58 -0.38 -2.84 16 6 C -0.02 -0.51 4.15 -104.62 -0.43 -0.95 16 7 C -0.11 -2.18 8.49 36.01 0.31 -1.88 16 8 C -0.05 -1.02 3.44 -104.63 -0.36 -1.38 16 9 C 0.10 1.86 4.22 -4.98 -0.02 1.84 16 10 N -0.52 -10.20 4.33 -237.51 -1.03 -11.23 16 11 C 0.16 3.66 3.24 -4.97 -0.02 3.64 16 12 C -0.49 -13.02 6.57 -34.44 -0.23 -13.25 16 13 H 0.09 2.77 6.08 -52.49 -0.32 2.45 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 16 Si 0.85 21.15 27.48 -169.99 -4.67 16.47 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 20 C 0.05 0.88 4.83 -3.82 -0.02 0.86 16 21 C -0.11 -1.66 4.67 -26.73 -0.12 -1.78 16 22 C -0.10 -1.19 2.92 -90.61 -0.26 -1.45 16 23 C -0.15 -1.58 8.96 37.16 0.33 -1.24 16 24 C -0.15 -1.65 9.19 37.16 0.34 -1.30 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 27 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.64 3.67 -51.93 -0.19 1.45 16 33 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 34 H 0.04 0.69 5.61 -51.93 -0.29 0.40 16 35 H 0.06 1.00 6.10 -51.93 -0.32 0.68 16 36 H -0.01 -0.28 5.20 -51.93 -0.27 -0.55 16 37 H 0.02 0.50 5.79 -51.93 -0.30 0.20 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 40 H 0.06 0.91 5.84 -51.93 -0.30 0.60 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.61 6.45 -51.94 -0.34 0.27 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -29.24 365.28 -9.95 -39.19 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.51 Total: 2.55 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -2.02 Total: -26.59 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.26 Total: -37.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.24 -9.95 -39.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652627776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.495 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds