Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38243 * 119.99834 * 2 1 4 4 C 1.38233 * 119.99953 * 179.72822 * 3 2 1 5 5 C 1.38239 * 120.00017 * 0.27044 * 4 3 2 6 6 C 1.38233 * 119.99899 * 359.96538 * 5 4 3 7 7 C 1.50700 * 119.99946 * 180.02562 * 6 5 4 8 8 C 1.38235 * 120.00220 * 180.18949 * 2 1 3 9 9 C 1.50693 * 120.00041 * 0.02562 * 8 2 1 10 10 N 1.46901 * 109.47511 * 76.70562 * 9 8 2 11 11 C 1.46905 * 111.00005 * 77.49284 * 10 9 8 12 12 C 1.50706 * 109.47116 * 283.20380 * 11 10 9 13 13 H 1.07998 * 120.00123 * 359.61604 * 12 11 10 14 14 C 1.37869 * 119.99746 * 179.62536 * 12 11 10 15 15 N 1.31511 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00100 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47236 * 90.00344 * 16 14 12 18 18 H 1.48504 * 109.47052 * 209.99917 * 16 14 12 19 19 H 1.48497 * 109.47254 * 330.00124 * 16 14 12 20 20 C 1.46898 * 111.00334 * 201.45185 * 10 9 8 21 21 C 1.53003 * 109.46917 * 163.65122 * 20 10 9 22 22 C 1.53008 * 109.46805 * 185.54184 * 21 20 10 23 23 C 1.53002 * 109.47122 * 64.99669 * 22 21 20 24 24 C 1.52999 * 109.46809 * 184.99932 * 22 21 20 25 25 H 1.08997 * 109.46592 * 95.70238 * 1 2 3 26 26 H 1.08998 * 109.47013 * 215.70395 * 1 2 3 27 27 H 1.08998 * 109.46899 * 335.70658 * 1 2 3 28 28 H 1.07999 * 120.00196 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00123 * 180.25356 * 4 3 2 30 30 H 1.07997 * 120.00192 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47345 * 87.47786 * 7 6 5 32 32 H 1.09006 * 109.47193 * 207.47410 * 7 6 5 33 33 H 1.08996 * 109.47457 * 327.47715 * 7 6 5 34 34 H 1.08999 * 109.47250 * 196.70419 * 9 8 2 35 35 H 1.09005 * 109.47372 * 316.70782 * 9 8 2 36 36 H 1.08996 * 109.46736 * 43.20282 * 11 10 9 37 37 H 1.08999 * 109.47195 * 163.20044 * 11 10 9 38 38 H 0.96997 * 120.00855 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46826 * 283.64676 * 20 10 9 40 40 H 1.09000 * 109.47015 * 43.65041 * 20 10 9 41 41 H 1.08998 * 109.47233 * 305.53276 * 21 20 10 42 42 H 1.08995 * 109.47376 * 65.54175 * 21 20 10 43 43 H 1.09003 * 109.46728 * 304.99506 * 22 21 20 44 44 H 1.08989 * 109.46903 * 299.99819 * 23 22 21 45 45 H 1.08993 * 109.46944 * 60.00305 * 23 22 21 46 46 H 1.09005 * 109.46624 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47076 * 60.00264 * 24 22 21 48 48 H 1.09005 * 109.47066 * 179.97438 * 24 22 21 49 49 H 1.08993 * 109.47402 * 299.99783 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0057 5 6 4.2717 0.0001 0.0057 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5021 0.0014 8 6 2.1982 -1.1971 -0.0040 9 6 1.4448 -2.5022 -0.0089 10 7 0.9247 -2.7624 -1.3578 11 6 1.9872 -3.2517 -2.2465 12 6 2.8583 -2.0975 -2.6710 13 1 2.6403 -1.0993 -2.3212 14 6 3.9333 -2.3160 -3.5062 15 7 4.6932 -1.3088 -3.8772 16 14 4.3105 -4.0428 -4.1108 17 1 3.5882 -4.2901 -5.3846 18 1 5.7719 -4.1802 -4.3358 19 1 3.8713 -5.0307 -3.0929 20 6 -0.2016 -3.7045 -1.3152 21 6 -0.9685 -3.6427 -2.6377 22 6 -2.2190 -4.5193 -2.5435 23 6 -3.1711 -3.9387 -1.4958 24 6 -2.9190 -4.5570 -3.9035 25 1 -0.3632 -0.1021 -1.0226 26 1 -0.3633 -0.8345 0.5997 27 1 -0.3633 0.9367 0.4228 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1326 0.0098 30 1 5.3517 0.0001 0.0097 31 1 4.5509 -2.7961 1.0284 32 1 3.7281 -3.2718 -0.4766 33 1 5.2684 -2.3826 -0.5472 34 1 2.1155 -3.3100 0.2839 35 1 0.6150 -2.4454 0.6957 36 1 2.5922 -3.9883 -1.7179 37 1 1.5405 -3.7131 -3.1272 38 1 5.4497 -1.4625 -4.4644 39 1 0.1761 -4.7154 -1.1612 40 1 -0.8684 -3.4368 -0.4956 41 1 -1.2615 -2.6125 -2.8400 42 1 -0.3313 -4.0043 -3.4446 43 1 -1.9329 -5.5304 -2.2539 44 1 -2.6724 -3.9119 -0.5270 45 1 -3.4571 -2.9277 -1.7854 46 1 -4.0621 -4.5630 -1.4290 47 1 -2.2407 -4.9707 -4.6498 48 1 -3.8096 -5.1819 -3.8365 49 1 -3.2050 -3.5460 -4.1931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652627776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -3.425977 kcal Electronic energy + Delta-G solvation = -24670.257011 eV Core-core repulsion = 21595.930156 eV Total energy + Delta-G solvation = -3074.326855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73529 -38.67139 -36.68916 -34.61391 -34.04708 -33.09116 -30.47885 -29.63774 -27.95256 -27.88546 -27.27122 -25.67239 -24.16800 -22.17102 -21.32912 -20.97537 -20.66159 -18.82724 -17.00810 -16.98299 -16.54558 -16.06858 -15.95163 -15.47693 -15.07599 -14.97262 -14.74775 -14.44783 -14.24200 -13.99978 -13.78297 -13.57646 -13.54667 -13.46414 -13.18498 -13.00975 -12.95856 -12.68150 -12.56108 -12.29581 -12.26134 -12.09195 -12.03266 -11.78914 -11.65251 -11.51345 -11.39868 -11.25727 -11.22312 -11.14333 -10.60037 -9.13259 -9.06951 -8.85173 -8.07044 -6.02457 0.77524 0.81463 1.31356 1.35019 1.40740 2.41719 2.98678 3.25473 3.47722 4.00065 4.06857 4.08981 4.15645 4.20699 4.32270 4.35601 4.45850 4.48408 4.60675 4.63865 4.68963 4.73939 4.74890 4.85009 4.85520 4.90967 4.94665 4.98200 5.01487 5.02787 5.07292 5.12912 5.16167 5.22618 5.24891 5.28559 5.35654 5.38716 5.54476 5.56371 5.61867 5.64617 5.74362 5.84873 5.95140 6.07207 6.24066 6.45789 6.54123 6.81682 7.07180 7.55564 9.07643 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.007149 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.318262 B = 3915.688032 C = 5535.831025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.146 4.146 6 C -0.048 4.048 7 C -0.103 4.103 8 C -0.068 4.068 9 C 0.103 3.897 10 N -0.529 5.529 11 C 0.169 3.831 12 C -0.467 4.467 13 H 0.058 0.942 14 C 0.022 3.978 15 N -0.940 5.940 16 Si 0.908 3.092 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.255 1.255 20 C 0.056 3.944 21 C -0.103 4.103 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.145 4.145 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.092 0.908 36 H -0.015 1.015 37 H 0.017 0.983 38 H 0.256 0.744 39 H 0.021 0.979 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.067 0.933 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -3.750 9.176 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.167 4.167 4 C -0.147 4.147 5 C -0.165 4.165 6 C -0.048 4.048 7 C -0.159 4.159 8 C -0.068 4.068 9 C -0.024 4.024 10 N -0.253 5.253 11 C 0.042 3.958 12 C -0.506 4.506 13 H 0.076 0.924 14 C -0.175 4.175 15 N -0.583 5.583 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.179 1.179 20 C -0.072 4.072 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.199 4.199 24 C -0.202 4.202 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.003 0.997 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.297 -3.301 8.886 15.527 hybrid contribution 1.536 -1.248 -0.830 2.146 sum -10.761 -4.549 8.056 14.191 Atomic orbital electron populations 1.20617 0.89829 1.02405 1.01967 1.19915 0.97128 0.92262 0.98807 1.21095 0.94095 0.97909 1.03555 1.21142 0.94937 0.97654 1.00926 1.20941 0.99170 0.93056 1.03293 1.19630 0.93800 0.94980 0.96421 1.20772 0.99208 0.95331 1.00616 1.19418 0.92436 0.95019 0.99953 1.20985 0.97502 0.93437 0.90464 1.61831 1.09011 1.45547 1.08866 1.20110 0.89503 0.94176 0.92028 1.21220 1.08551 0.95145 1.25672 0.92353 1.25415 0.96645 0.98426 0.96994 1.70037 1.18742 1.32084 1.37432 0.86320 0.77083 0.83592 0.79557 1.20365 1.21761 1.17872 1.22257 0.92630 0.93307 0.98993 1.21569 0.95889 1.00167 0.96513 1.21071 0.94603 0.98974 0.96447 1.21840 0.98828 1.00903 0.98353 1.21814 1.00334 1.01860 0.96206 0.92207 0.90954 0.91015 0.84999 0.85553 0.87621 0.90693 0.91731 0.94023 0.94730 0.89001 0.99719 0.96535 0.93513 0.96031 0.89164 0.92294 0.94414 0.91367 0.92244 0.92854 0.91787 0.93691 0.91375 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.47 71.24 0.67 -1.98 16 2 C -0.08 -2.94 5.85 -19.86 -0.12 -3.05 16 3 C -0.15 -5.33 9.68 22.27 0.22 -5.11 16 4 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 5 C -0.15 -6.10 9.71 22.27 0.22 -5.89 16 6 C -0.05 -2.01 4.15 -19.87 -0.08 -2.09 16 7 C -0.10 -4.13 8.49 71.24 0.61 -3.52 16 8 C -0.07 -2.65 3.44 -19.87 -0.07 -2.72 16 9 C 0.10 3.61 4.22 85.55 0.36 3.98 16 10 N -0.53 -20.08 4.33 -905.35 -3.92 -24.01 16 11 C 0.17 7.73 3.24 85.56 0.28 8.01 16 12 C -0.47 -25.35 6.57 25.60 0.17 -25.18 16 13 H 0.06 3.57 6.08 -2.91 -0.02 3.55 16 14 C 0.02 1.23 5.47 84.65 0.46 1.69 16 15 N -0.94 -57.83 13.96 21.44 0.30 -57.53 16 16 Si 0.91 44.09 27.48 68.60 1.88 45.98 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 19 H -0.25 -11.60 6.53 99.48 0.65 -10.95 16 20 C 0.06 1.67 4.83 86.30 0.42 2.09 16 21 C -0.10 -3.03 4.67 30.60 0.14 -2.89 16 22 C -0.09 -2.03 2.92 -10.79 -0.03 -2.06 16 23 C -0.14 -2.60 8.96 71.98 0.64 -1.95 16 24 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.84 6.44 -2.39 -0.02 1.83 16 27 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 28 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 2.73 3.67 -2.38 -0.01 2.72 16 33 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.03 1.23 5.61 -2.39 -0.01 1.22 16 35 H 0.09 2.64 6.10 -2.38 -0.01 2.63 16 36 H -0.01 -0.68 5.20 -2.39 -0.01 -0.69 16 37 H 0.02 0.78 5.79 -2.39 -0.01 0.77 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 40 H 0.09 2.24 5.84 -2.39 -0.01 2.23 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.28 6.73 -2.39 -0.02 1.26 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.05 6.45 -2.39 -0.02 1.03 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -64.25 365.28 3.88 -60.36 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.85 Total: 22.85 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 4.77 Total: -47.65 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.62 Total: -81.54 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -64.25 3.88 -60.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652627776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.937 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds