Wall clock time and date at job start Tue Mar 31 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38250 * 120.00012 * 2 1 4 4 C 1.38217 * 120.00165 * 179.77071 * 3 2 1 5 5 C 1.38258 * 119.99822 * 0.52020 * 4 3 2 6 6 C 1.50699 * 120.00292 * 179.75171 * 5 4 3 7 7 N 1.46908 * 109.46739 * 259.95455 * 6 5 4 8 8 C 1.46902 * 110.99596 * 200.69607 * 7 6 5 9 9 C 1.50700 * 109.46863 * 169.38942 * 8 7 6 10 10 H 1.08003 * 119.99903 * 5.07250 * 9 8 7 11 11 C 1.37879 * 119.99991 * 185.06869 * 9 8 7 12 12 N 1.31513 * 119.99995 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99960 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46809 * 89.99922 * 13 11 9 15 15 H 1.48494 * 109.47146 * 209.99532 * 13 11 9 16 16 H 1.48496 * 109.47154 * 330.00125 * 13 11 9 17 17 C 1.46896 * 110.99948 * 76.74459 * 7 6 5 18 18 C 1.52996 * 109.47275 * 79.22776 * 17 7 6 19 19 C 1.53001 * 109.47243 * 80.95732 * 18 17 7 20 20 C 1.53002 * 109.46961 * 200.95285 * 18 17 7 21 21 C 1.53000 * 109.47248 * 320.95519 * 18 17 7 22 22 C 1.38210 * 119.99761 * 359.47026 * 5 4 3 23 23 C 1.50706 * 119.99803 * 180.27380 * 22 5 4 24 24 C 1.38219 * 120.00038 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47226 * 269.97864 * 1 2 3 26 26 H 1.08994 * 109.47376 * 29.98197 * 1 2 3 27 27 H 1.09006 * 109.47032 * 149.98469 * 1 2 3 28 28 H 1.08002 * 120.00320 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00234 * 180.27465 * 4 3 2 30 30 H 1.09000 * 109.47844 * 139.95110 * 6 5 4 31 31 H 1.09003 * 109.46855 * 19.94806 * 6 5 4 32 32 H 1.08995 * 109.47464 * 289.39443 * 8 7 6 33 33 H 1.09007 * 109.47087 * 49.39196 * 8 7 6 34 34 H 0.96997 * 120.00411 * 179.97438 * 12 11 9 35 35 H 1.09007 * 109.46845 * 199.22991 * 17 7 6 36 36 H 1.09001 * 109.47429 * 319.22391 * 17 7 6 37 37 H 1.09003 * 109.47442 * 58.42608 * 19 18 17 38 38 H 1.09001 * 109.47381 * 178.43507 * 19 18 17 39 39 H 1.09002 * 109.46992 * 298.43031 * 19 18 17 40 40 H 1.08994 * 109.46821 * 60.00222 * 20 18 17 41 41 H 1.09004 * 109.46971 * 179.97438 * 20 18 17 42 42 H 1.09000 * 109.47439 * 299.99982 * 20 18 17 43 43 H 1.08995 * 109.46800 * 47.21437 * 21 18 17 44 44 H 1.09000 * 109.47152 * 167.21891 * 21 18 17 45 45 H 1.09000 * 109.46893 * 287.21971 * 21 18 17 46 46 H 1.08995 * 109.46871 * 90.00830 * 23 22 5 47 47 H 1.09003 * 109.47089 * 209.99932 * 23 22 5 48 48 H 1.08992 * 109.47024 * 330.00690 * 23 22 5 49 49 H 1.08000 * 120.00098 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0048 5 6 4.2717 0.0000 -0.0013 6 6 5.7787 0.0000 -0.0017 7 7 6.2679 -0.2350 -1.3669 8 6 7.6529 -0.7243 -1.3528 9 6 8.0321 -1.1987 -2.7320 10 1 7.3461 -1.0673 -3.5558 11 6 9.2547 -1.8004 -2.9422 12 7 9.5858 -2.2140 -4.1459 13 14 10.4409 -2.0283 -1.5172 14 1 10.1868 -3.3387 -0.8665 15 1 11.8362 -1.9894 -2.0236 16 1 10.2423 -0.9380 -0.5287 17 6 6.1466 0.9786 -2.1856 18 6 7.3004 1.9298 -1.8617 19 6 8.5532 1.4893 -2.6216 20 6 6.9225 3.3516 -2.2821 21 6 7.5793 1.8997 -0.3576 22 6 3.5806 -1.1969 -0.0011 23 6 4.3342 -2.5021 -0.0015 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 0.0093 30 1 6.1423 -0.7899 0.6555 31 1 6.1421 0.9643 0.3535 32 1 8.3203 0.0824 -1.0497 33 1 7.7390 -1.5512 -0.6477 34 1 10.4461 -2.6370 -4.2939 35 1 6.1829 0.7097 -3.2414 36 1 5.1984 1.4704 -1.9684 37 1 8.3460 1.4840 -3.6917 38 1 9.3676 2.1830 -2.4126 39 1 8.8385 0.4871 -2.3018 40 1 6.0301 3.6654 -1.7407 41 1 7.7444 4.0293 -2.0508 42 1 6.7239 3.3730 -3.3536 43 1 7.6243 0.8653 -0.0172 44 1 8.5309 2.3909 -0.1546 45 1 6.7811 2.4215 0.1703 46 1 4.5161 -2.8168 1.0261 47 1 3.7449 -3.2617 -0.5151 48 1 5.2864 -2.3716 -0.5155 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657377678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:24 Heat of formation + Delta-G solvation = 66.647299 kcal Electronic energy + Delta-G solvation = -24800.857625 eV Core-core repulsion = 21729.569375 eV Total energy + Delta-G solvation = -3071.288249 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.10379 -38.75068 -34.37342 -33.15538 -32.40940 -31.70936 -29.14483 -27.98849 -27.14375 -26.60922 -26.07103 -24.87242 -22.96577 -21.77220 -20.46686 -19.60082 -18.26010 -16.86089 -15.81526 -15.68938 -14.99513 -14.82725 -14.65894 -14.24378 -13.84420 -13.76755 -13.43058 -13.03650 -12.89345 -12.86176 -12.61495 -12.43362 -12.27771 -11.82195 -11.71554 -11.53192 -11.42377 -11.29073 -11.15046 -10.92815 -10.88830 -10.75121 -10.66057 -10.47914 -10.32488 -10.07124 -9.81148 -9.75768 -9.36510 -9.13836 -8.53354 -8.46752 -8.11047 -7.04294 -6.06246 -3.97857 1.61738 1.67551 3.25505 3.33266 3.35031 3.95724 4.38706 4.91197 4.99363 5.02835 5.21841 5.24755 5.31413 5.35246 5.40126 5.42688 5.55887 5.57364 5.65567 5.72443 5.81685 5.89737 5.93501 5.98402 6.01461 6.04369 6.11427 6.14149 6.19584 6.25725 6.30965 6.41818 6.47750 6.54664 6.62211 6.67488 6.75145 6.77517 6.80262 6.89241 6.96275 7.00604 7.07774 7.09623 7.32271 7.57040 7.78470 7.96056 8.10578 8.66871 9.04558 9.53412 11.06680 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.005393 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.750042 B = 5190.373629 C = 6086.583227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.065 4.065 6 C 0.050 3.950 7 N -0.513 5.513 8 C 0.128 3.872 9 C -0.491 4.491 10 H 0.081 0.919 11 C 0.069 3.931 12 N -0.897 5.897 13 Si 0.862 3.138 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.079 3.921 18 C -0.094 4.094 19 C -0.176 4.176 20 C -0.134 4.134 21 C -0.166 4.166 22 C -0.056 4.056 23 C -0.122 4.122 24 C -0.126 4.126 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.135 0.865 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 6.770 9.706 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.129 4.129 5 C -0.066 4.066 6 C -0.077 4.077 7 N -0.235 5.235 8 C 0.003 3.997 9 C -0.529 4.529 10 H 0.099 0.901 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.689 3.311 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.050 4.050 18 C -0.096 4.096 19 C -0.232 4.232 20 C -0.192 4.192 21 C -0.223 4.223 22 C -0.057 4.057 23 C -0.179 4.179 24 C -0.144 4.144 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.152 0.848 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.112 0.888 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.982 6.292 9.380 16.466 hybrid contribution 1.175 0.540 0.911 1.582 sum -10.807 6.832 10.291 16.412 Atomic orbital electron populations 1.20732 0.91823 1.02353 1.01737 1.19773 0.95522 0.93308 1.01007 1.20854 0.94134 0.97044 1.02942 1.20983 0.93930 0.97454 1.00505 1.19853 0.95968 0.92202 0.98551 1.21908 0.90415 1.02268 0.93083 1.62154 1.23921 1.29205 1.08211 1.21091 0.85103 0.95015 0.98533 1.20875 1.01650 1.36882 0.93493 0.90090 1.24850 0.97816 0.95470 0.95145 1.69873 1.22339 1.40703 1.20646 0.87071 0.81151 0.79255 0.83584 1.20160 1.21223 1.19070 1.22090 0.95134 0.88564 0.99195 1.21090 0.98512 0.95081 0.94894 1.22985 0.94331 1.05848 0.99995 1.21846 0.99996 0.96471 1.00909 1.22762 0.99957 1.03080 0.96468 1.19786 0.93079 0.95413 0.97382 1.20904 1.02120 0.93390 1.01464 1.20871 0.93686 0.97145 1.02689 0.91723 0.91947 0.91877 0.86869 0.86718 0.91006 0.91198 0.95314 0.96494 0.92689 0.90479 0.92758 0.93254 0.96058 0.84781 0.93751 0.93551 0.92926 0.89634 0.93611 0.93421 0.92193 0.92212 0.88762 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.10 -1.23 5.88 -104.63 -0.62 -1.85 16 3 C -0.13 -1.72 9.70 -39.58 -0.38 -2.10 16 4 C -0.11 -1.57 8.54 -39.58 -0.34 -1.91 16 5 C -0.07 -1.02 5.00 -104.63 -0.52 -1.55 16 6 C 0.05 0.84 3.22 -4.97 -0.02 0.82 16 7 N -0.51 -10.01 3.97 -237.51 -0.94 -10.95 16 8 C 0.13 2.83 2.64 -4.97 -0.01 2.82 16 9 C -0.49 -12.85 6.79 -34.44 -0.23 -13.09 16 10 H 0.08 2.37 7.29 -52.48 -0.38 1.99 16 11 C 0.07 1.87 5.13 -17.82 -0.09 1.78 16 12 N -0.90 -26.36 13.96 55.43 0.77 -25.58 16 13 Si 0.86 20.48 26.96 -169.99 -4.58 15.90 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -5.99 6.69 56.52 0.38 -5.62 16 17 C 0.08 1.47 4.68 -3.83 -0.02 1.45 16 18 C -0.09 -1.64 0.77 -154.51 -0.12 -1.76 16 19 C -0.18 -3.58 7.07 37.16 0.26 -3.32 16 20 C -0.13 -2.00 8.34 37.16 0.31 -1.69 16 21 C -0.17 -2.70 6.22 37.16 0.23 -2.47 16 22 C -0.06 -0.87 5.88 -104.62 -0.62 -1.48 16 23 C -0.12 -1.84 9.26 36.01 0.33 -1.51 16 24 C -0.13 -1.75 9.36 -39.58 -0.37 -2.12 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.11 1.50 8.01 -52.49 -0.42 1.08 16 30 H 0.07 1.19 6.83 -51.93 -0.35 0.84 16 31 H 0.07 1.09 3.51 -51.93 -0.18 0.91 16 32 H 0.03 0.65 2.29 -51.93 -0.12 0.53 16 33 H 0.02 0.39 6.95 -51.93 -0.36 0.03 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.63 7.10 -51.93 -0.37 1.26 16 36 H 0.05 0.93 6.22 -51.93 -0.32 0.61 16 37 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 3.10 2.01 -51.93 -0.10 2.99 16 40 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.50 3.05 -51.93 -0.16 1.34 16 44 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 45 H 0.05 0.68 7.01 -51.93 -0.36 0.32 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 48 H 0.09 1.67 6.35 -51.93 -0.33 1.34 16 49 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -27.95 354.59 -9.35 -37.31 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.11 Total: 6.64 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -1.84 Total: -28.66 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.17 Total: -36.53 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.58 Total: 15.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.95 -9.35 -37.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657377678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.953 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds