Wall clock time and date at job start Tue Mar 31 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38250 * 120.00012 * 2 1 4 4 C 1.38217 * 120.00165 * 179.77071 * 3 2 1 5 5 C 1.38258 * 119.99822 * 0.52020 * 4 3 2 6 6 C 1.50699 * 120.00292 * 179.75171 * 5 4 3 7 7 N 1.46908 * 109.46739 * 259.95455 * 6 5 4 8 8 C 1.46902 * 110.99596 * 200.69607 * 7 6 5 9 9 C 1.50700 * 109.46863 * 169.38942 * 8 7 6 10 10 H 1.08003 * 119.99903 * 5.07250 * 9 8 7 11 11 C 1.37879 * 119.99991 * 185.06869 * 9 8 7 12 12 N 1.31513 * 119.99995 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99960 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.46809 * 89.99922 * 13 11 9 15 15 H 1.48494 * 109.47146 * 209.99532 * 13 11 9 16 16 H 1.48496 * 109.47154 * 330.00125 * 13 11 9 17 17 C 1.46896 * 110.99948 * 76.74459 * 7 6 5 18 18 C 1.52996 * 109.47275 * 79.22776 * 17 7 6 19 19 C 1.53001 * 109.47243 * 80.95732 * 18 17 7 20 20 C 1.53002 * 109.46961 * 200.95285 * 18 17 7 21 21 C 1.53000 * 109.47248 * 320.95519 * 18 17 7 22 22 C 1.38210 * 119.99761 * 359.47026 * 5 4 3 23 23 C 1.50706 * 119.99803 * 180.27380 * 22 5 4 24 24 C 1.38219 * 120.00038 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47226 * 269.97864 * 1 2 3 26 26 H 1.08994 * 109.47376 * 29.98197 * 1 2 3 27 27 H 1.09006 * 109.47032 * 149.98469 * 1 2 3 28 28 H 1.08002 * 120.00320 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00234 * 180.27465 * 4 3 2 30 30 H 1.09000 * 109.47844 * 139.95110 * 6 5 4 31 31 H 1.09003 * 109.46855 * 19.94806 * 6 5 4 32 32 H 1.08995 * 109.47464 * 289.39443 * 8 7 6 33 33 H 1.09007 * 109.47087 * 49.39196 * 8 7 6 34 34 H 0.96997 * 120.00411 * 179.97438 * 12 11 9 35 35 H 1.09007 * 109.46845 * 199.22991 * 17 7 6 36 36 H 1.09001 * 109.47429 * 319.22391 * 17 7 6 37 37 H 1.09003 * 109.47442 * 58.42608 * 19 18 17 38 38 H 1.09001 * 109.47381 * 178.43507 * 19 18 17 39 39 H 1.09002 * 109.46992 * 298.43031 * 19 18 17 40 40 H 1.08994 * 109.46821 * 60.00222 * 20 18 17 41 41 H 1.09004 * 109.46971 * 179.97438 * 20 18 17 42 42 H 1.09000 * 109.47439 * 299.99982 * 20 18 17 43 43 H 1.08995 * 109.46800 * 47.21437 * 21 18 17 44 44 H 1.09000 * 109.47152 * 167.21891 * 21 18 17 45 45 H 1.09000 * 109.46893 * 287.21971 * 21 18 17 46 46 H 1.08995 * 109.46871 * 90.00830 * 23 22 5 47 47 H 1.09003 * 109.47089 * 209.99932 * 23 22 5 48 48 H 1.08992 * 109.47024 * 330.00690 * 23 22 5 49 49 H 1.08000 * 120.00098 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0048 5 6 4.2717 0.0000 -0.0013 6 6 5.7787 0.0000 -0.0017 7 7 6.2679 -0.2350 -1.3669 8 6 7.6529 -0.7243 -1.3528 9 6 8.0321 -1.1987 -2.7320 10 1 7.3461 -1.0673 -3.5558 11 6 9.2547 -1.8004 -2.9422 12 7 9.5858 -2.2140 -4.1459 13 14 10.4409 -2.0283 -1.5172 14 1 10.1868 -3.3387 -0.8665 15 1 11.8362 -1.9894 -2.0236 16 1 10.2423 -0.9380 -0.5287 17 6 6.1466 0.9786 -2.1856 18 6 7.3004 1.9298 -1.8617 19 6 8.5532 1.4893 -2.6216 20 6 6.9225 3.3516 -2.2821 21 6 7.5793 1.8997 -0.3576 22 6 3.5806 -1.1969 -0.0011 23 6 4.3342 -2.5021 -0.0015 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 0.0093 30 1 6.1423 -0.7899 0.6555 31 1 6.1421 0.9643 0.3535 32 1 8.3203 0.0824 -1.0497 33 1 7.7390 -1.5512 -0.6477 34 1 10.4461 -2.6370 -4.2939 35 1 6.1829 0.7097 -3.2414 36 1 5.1984 1.4704 -1.9684 37 1 8.3460 1.4840 -3.6917 38 1 9.3676 2.1830 -2.4126 39 1 8.8385 0.4871 -2.3018 40 1 6.0301 3.6654 -1.7407 41 1 7.7444 4.0293 -2.0508 42 1 6.7239 3.3730 -3.3536 43 1 7.6243 0.8653 -0.0172 44 1 8.5309 2.3909 -0.1546 45 1 6.7811 2.4215 0.1703 46 1 4.5161 -2.8168 1.0261 47 1 3.7449 -3.2617 -0.5151 48 1 5.2864 -2.3716 -0.5155 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657377678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:23 Heat of formation + Delta-G solvation = 52.393494 kcal Electronic energy + Delta-G solvation = -24801.475716 eV Core-core repulsion = 21729.569375 eV Total energy + Delta-G solvation = -3071.906341 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46666 -39.94838 -35.60752 -34.98830 -33.80359 -32.90045 -30.75760 -29.38654 -28.28581 -27.79818 -27.51732 -26.34150 -24.47955 -22.86640 -22.05686 -20.73188 -19.73369 -18.84038 -17.11907 -16.99635 -16.43217 -16.25093 -16.08811 -15.68366 -15.14239 -14.99901 -14.64308 -14.53719 -14.24408 -13.94130 -13.90647 -13.75674 -13.34195 -13.22815 -13.09729 -12.92661 -12.75760 -12.56062 -12.47079 -12.43889 -12.36230 -12.22231 -12.02272 -11.84106 -11.69037 -11.62570 -11.49149 -11.28057 -11.07248 -10.88200 -10.64376 -9.52725 -9.19752 -8.56958 -8.19479 -6.13995 0.54663 0.61331 1.35848 1.37388 1.45834 2.37714 2.85913 3.14263 3.54377 3.95711 3.99975 4.02831 4.03863 4.16351 4.19676 4.23703 4.39037 4.56139 4.56943 4.67799 4.70231 4.73410 4.78341 4.82090 4.87008 4.87668 4.90635 4.92783 4.95339 5.04196 5.08461 5.10742 5.13107 5.17488 5.18167 5.29365 5.37865 5.40471 5.44663 5.51083 5.54404 5.65041 5.69414 5.79817 5.95461 6.01894 6.12383 6.28132 6.53423 6.80037 6.86051 7.40915 8.97364 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.005393 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.750042 B = 5190.373629 C = 6086.583227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.114 4.114 5 C -0.087 4.087 6 C 0.058 3.942 7 N -0.528 5.528 8 C 0.140 3.860 9 C -0.477 4.477 10 H 0.033 0.967 11 C 0.013 3.987 12 N -0.949 5.949 13 Si 0.923 3.077 14 H -0.271 1.271 15 H -0.288 1.288 16 H -0.242 1.242 17 C 0.085 3.915 18 C -0.092 4.092 19 C -0.173 4.173 20 C -0.129 4.129 21 C -0.164 4.164 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.034 0.966 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 8.785 12.498 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.153 4.153 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.069 4.069 7 N -0.250 5.250 8 C 0.014 3.986 9 C -0.516 4.516 10 H 0.051 0.949 11 C -0.184 4.184 12 N -0.591 5.591 13 Si 0.747 3.253 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.165 1.165 17 C -0.043 4.043 18 C -0.093 4.093 19 C -0.230 4.230 20 C -0.187 4.187 21 C -0.220 4.220 22 C -0.077 4.077 23 C -0.174 4.174 24 C -0.155 4.155 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.555 8.321 12.194 20.042 hybrid contribution 1.505 -0.076 -0.026 1.508 sum -12.050 8.244 12.168 19.006 Atomic orbital electron populations 1.20787 0.89448 1.03306 1.02950 1.20193 0.97349 0.92843 0.99298 1.21201 0.93861 0.98257 1.01958 1.21179 0.94700 0.97315 1.00086 1.19842 0.95296 0.93116 1.00540 1.21871 0.91300 1.02847 0.90840 1.61978 1.22188 1.30224 1.10608 1.20874 0.87126 0.95182 0.95463 1.20974 1.00493 1.35799 0.94302 0.94886 1.25610 0.99729 0.95478 0.97545 1.70037 1.23048 1.42794 1.23199 0.86076 0.78447 0.79986 0.80741 1.19660 1.21367 1.16543 1.21965 0.96763 0.88697 0.96895 1.21039 0.96204 0.96317 0.95754 1.22861 0.96574 1.04776 0.98756 1.21785 1.01478 0.94572 1.00844 1.22690 1.01565 1.02651 0.95079 1.19937 0.94037 0.95309 0.98401 1.20817 1.00604 0.93991 1.01978 1.21094 0.93183 0.98463 1.02715 0.90254 0.90687 0.91316 0.84295 0.85294 0.91475 0.89602 0.94049 0.96816 0.92850 0.94444 0.90844 0.95930 0.94650 0.87408 0.91403 0.92338 0.93593 0.91094 0.92706 0.90621 0.90781 0.91714 0.91907 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 2 C -0.10 -2.21 5.88 -19.87 -0.12 -2.33 16 3 C -0.13 -3.07 9.70 22.27 0.22 -2.85 16 4 C -0.11 -2.94 8.54 22.27 0.19 -2.75 16 5 C -0.09 -2.62 5.00 -19.87 -0.10 -2.72 16 6 C 0.06 1.85 3.22 85.56 0.28 2.13 16 7 N -0.53 -20.78 3.97 -905.34 -3.59 -24.37 16 8 C 0.14 6.26 2.64 85.56 0.23 6.49 16 9 C -0.48 -26.22 6.79 25.60 0.17 -26.05 16 10 H 0.03 2.09 7.29 -2.91 -0.02 2.07 16 11 C 0.01 0.73 5.13 84.66 0.43 1.17 16 12 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 13 Si 0.92 42.79 26.96 68.60 1.85 44.64 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.24 -10.18 6.69 99.48 0.67 -9.52 16 17 C 0.09 3.18 4.68 86.30 0.40 3.59 16 18 C -0.09 -3.07 0.77 -52.18 -0.04 -3.11 16 19 C -0.17 -7.13 7.07 71.98 0.51 -6.62 16 20 C -0.13 -3.51 8.34 71.98 0.60 -2.91 16 21 C -0.16 -4.81 6.22 71.98 0.45 -4.36 16 22 C -0.08 -2.29 5.88 -19.86 -0.12 -2.41 16 23 C -0.12 -3.54 9.26 71.24 0.66 -2.88 16 24 C -0.14 -3.55 9.36 22.27 0.21 -3.35 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.07 1.02 8.09 -2.38 -0.02 1.00 16 28 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.13 2.86 8.01 -2.91 -0.02 2.84 16 30 H 0.07 2.18 6.83 -2.39 -0.02 2.16 16 31 H 0.09 2.45 3.51 -2.39 -0.01 2.44 16 32 H 0.04 1.82 2.29 -2.39 -0.01 1.81 16 33 H 0.01 0.63 6.95 -2.38 -0.02 0.61 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.04 1.67 7.10 -2.38 -0.02 1.65 16 36 H 0.07 2.44 6.22 -2.39 -0.01 2.42 16 37 H 0.02 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 5.06 2.01 -2.39 0.00 5.05 16 40 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.31 3.05 -2.39 -0.01 2.30 16 44 H 0.05 1.53 8.08 -2.39 -0.02 1.51 16 45 H 0.08 1.82 7.01 -2.39 -0.02 1.80 16 46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 48 H 0.06 2.29 6.35 -2.39 -0.02 2.27 16 49 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -63.87 354.59 4.12 -59.74 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.88 Total: 28.22 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 4.68 Total: -49.96 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -3.29 Total: -82.64 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.85 Total: 44.64 kcal Total: -63.87 4.12 -59.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657377678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.138 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds