Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00243 * 2 1 4 4 C 1.38209 * 120.00457 * 179.76484 * 3 2 1 5 5 C 1.38262 * 119.99874 * 0.53161 * 4 3 2 6 6 C 1.50696 * 120.00239 * 179.74348 * 5 4 3 7 7 N 1.46902 * 109.47044 * 253.72008 * 6 5 4 8 8 C 1.46901 * 110.99940 * 190.98862 * 7 6 5 9 9 C 1.50703 * 109.47058 * 66.89951 * 8 7 6 10 10 H 1.08000 * 119.99858 * 5.01574 * 9 8 7 11 11 C 1.37883 * 119.99972 * 185.02341 * 9 8 7 12 12 N 1.31505 * 119.99792 * 354.69515 * 11 9 8 13 13 Si 1.86799 * 119.99834 * 174.69825 * 11 9 8 14 14 H 1.48491 * 109.47272 * 65.00059 * 13 11 9 15 15 H 1.48501 * 109.46921 * 185.00065 * 13 11 9 16 16 H 1.48504 * 109.47129 * 304.99762 * 13 11 9 17 17 C 1.46895 * 110.99878 * 67.03368 * 7 6 5 18 18 C 1.53001 * 109.47017 * 189.99692 * 17 7 6 19 19 C 1.53004 * 109.47306 * 180.02562 * 18 17 7 20 20 C 1.52988 * 109.47337 * 175.00336 * 19 18 17 21 21 C 1.53003 * 109.46623 * 295.00577 * 19 18 17 22 22 C 1.38215 * 119.99619 * 359.46359 * 5 4 3 23 23 C 1.50698 * 119.99805 * 180.27662 * 22 5 4 24 24 C 1.38220 * 119.99999 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47324 * 269.98026 * 1 2 3 26 26 H 1.08998 * 109.46942 * 29.98198 * 1 2 3 27 27 H 1.08997 * 109.46963 * 149.98206 * 1 2 3 28 28 H 1.08006 * 119.99538 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.00484 * 180.27562 * 4 3 2 30 30 H 1.09000 * 109.47064 * 133.71575 * 6 5 4 31 31 H 1.09002 * 109.46874 * 13.71967 * 6 5 4 32 32 H 1.08998 * 109.47243 * 186.89651 * 8 7 6 33 33 H 1.08998 * 109.47197 * 306.90275 * 8 7 6 34 34 H 0.97006 * 120.00289 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.47398 * 310.00180 * 17 7 6 36 36 H 1.09006 * 109.47109 * 70.00123 * 17 7 6 37 37 H 1.08996 * 109.47434 * 300.00466 * 18 17 7 38 38 H 1.09006 * 109.46829 * 60.00260 * 18 17 7 39 39 H 1.08993 * 109.46875 * 54.99930 * 19 18 17 40 40 H 1.09007 * 109.47576 * 59.99813 * 20 19 18 41 41 H 1.08994 * 109.47335 * 179.97438 * 20 19 18 42 42 H 1.09006 * 109.47587 * 300.00347 * 20 19 18 43 43 H 1.08995 * 109.47663 * 60.00207 * 21 19 18 44 44 H 1.09004 * 109.46640 * 179.97438 * 21 19 18 45 45 H 1.09001 * 109.47059 * 299.98940 * 21 19 18 46 46 H 1.08992 * 109.47210 * 90.64122 * 23 22 5 47 47 H 1.09005 * 109.46868 * 210.64160 * 23 22 5 48 48 H 1.09001 * 109.47504 * 330.64136 * 23 22 5 49 49 H 1.08000 * 120.00163 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2718 0.0000 -0.0013 6 6 5.7787 0.0000 -0.0018 7 7 6.2679 -0.3817 -1.3333 8 6 7.7127 -0.6461 -1.3075 9 6 7.9836 -1.8760 -0.4799 10 1 7.1605 -2.4543 -0.0867 11 6 9.2821 -2.2630 -0.2246 12 7 10.2822 -1.6214 -0.7881 13 14 9.6207 -3.6987 0.9215 14 1 9.0851 -4.9473 0.3224 15 1 11.0854 -3.8355 1.1241 16 1 8.9608 -3.4544 2.2292 17 6 5.9386 0.6463 -2.3297 18 6 6.2358 0.1111 -3.7319 19 6 5.8934 1.1820 -4.7697 20 6 6.3062 0.6952 -6.1601 21 6 4.3870 1.4488 -4.7491 22 6 3.5807 -1.1970 -0.0012 23 6 4.3342 -2.5021 -0.0016 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6582 2.1326 0.0004 29 1 4.1204 2.1326 0.0094 30 1 6.1423 -0.7139 0.7373 31 1 6.1421 0.9971 0.2468 32 1 8.0710 -0.8063 -2.3244 33 1 8.2305 0.2075 -0.8700 34 1 11.1958 -1.8938 -0.6089 35 1 4.8812 0.8999 -2.2542 36 1 6.5399 1.5366 -2.1456 37 1 7.2932 -0.1425 -3.8074 38 1 5.6345 -0.7792 -3.9160 39 1 6.4285 2.1016 -4.5330 40 1 5.7711 -0.2245 -6.3969 41 1 6.0618 1.4579 -6.8994 42 1 7.3794 0.5050 -6.1748 43 1 4.0929 1.7957 -3.7585 44 1 4.1431 2.2120 -5.4881 45 1 3.8518 0.5292 -4.9859 46 1 4.5063 -2.8226 1.0258 47 1 3.7499 -3.2587 -0.5253 48 1 5.2914 -2.3689 -0.5058 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657466597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -5.544497 kcal Electronic energy + Delta-G solvation = -23918.603200 eV Core-core repulsion = 20844.184479 eV Total energy + Delta-G solvation = -3074.418720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.48251 -37.36784 -35.46499 -33.26521 -32.45144 -31.68552 -29.13053 -28.07619 -26.94430 -26.77753 -25.84218 -23.70869 -22.76096 -21.69143 -20.35527 -19.51266 -19.29998 -16.58706 -15.66177 -15.41198 -15.09028 -14.61972 -14.49624 -14.30064 -13.91571 -13.78884 -13.54744 -13.09735 -12.83479 -12.72868 -12.68537 -12.35621 -12.24748 -12.02825 -11.93928 -11.64358 -11.53993 -11.28635 -11.27304 -11.04763 -10.95766 -10.80565 -10.64062 -10.51548 -10.38274 -10.29766 -10.12836 -9.98858 -9.52778 -9.21039 -8.41589 -8.36942 -8.02702 -7.18515 -6.02436 -4.02831 1.67906 1.74309 3.33024 3.37699 3.39990 4.03225 4.43078 4.91121 5.03429 5.06070 5.18748 5.23606 5.29276 5.30769 5.33812 5.43873 5.49741 5.60811 5.74329 5.78881 5.80279 5.85336 5.88685 5.94061 5.98459 6.05886 6.09077 6.12412 6.17400 6.25164 6.27105 6.36571 6.38581 6.40884 6.43205 6.52661 6.66667 6.75405 6.81509 6.85378 6.88420 6.97077 7.18422 7.36181 7.37442 7.44289 7.85749 8.13206 8.22335 8.57523 9.05055 9.61162 11.08285 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005978 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.750026 B = 4682.616576 C = 6760.205823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.114 4.114 5 C -0.070 4.070 6 C 0.098 3.902 7 N -0.528 5.528 8 C 0.190 3.810 9 C -0.510 4.510 10 H 0.066 0.934 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.056 3.944 18 C -0.109 4.109 19 C -0.096 4.096 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.049 4.049 23 C -0.132 4.132 24 C -0.128 4.128 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.036 0.964 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.112 0.888 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 5.138 -2.655 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.152 4.152 4 C -0.132 4.132 5 C -0.071 4.071 6 C -0.029 4.029 7 N -0.252 5.252 8 C 0.065 3.935 9 C -0.548 4.548 10 H 0.084 0.916 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.072 4.072 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.202 4.202 21 C -0.202 4.202 22 C -0.050 4.050 23 C -0.188 4.188 24 C -0.146 4.146 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.130 0.870 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.109 4.698 -2.805 16.069 hybrid contribution 0.721 0.088 0.867 1.131 sum -14.388 4.786 -1.939 15.287 Atomic orbital electron populations 1.20724 0.91904 1.02212 1.01739 1.19761 0.95439 0.93326 1.01177 1.20826 0.94078 0.96988 1.03259 1.21025 0.93972 0.97489 1.00743 1.19966 0.96295 0.92232 0.98597 1.20945 0.88855 0.99438 0.93682 1.62096 1.19171 1.40526 1.03420 1.19800 0.80332 0.95668 0.97735 1.21186 0.91777 1.10031 1.31829 0.91561 1.24961 0.96262 0.96910 0.96226 1.69954 0.99004 1.41401 1.43238 0.86656 0.77006 0.82909 0.81458 1.20238 1.21437 1.20190 1.22087 0.99608 0.92963 0.92562 1.21631 1.02335 0.97646 0.93037 1.21102 0.96051 0.99039 0.95331 1.21812 1.01391 1.00717 0.96256 1.21858 0.96000 1.01006 1.01298 1.19809 0.92883 0.95599 0.96668 1.21096 1.02999 0.92762 1.01973 1.20889 0.93763 0.97067 1.02905 0.91735 0.92032 0.91953 0.86956 0.86803 0.88716 0.95710 0.94636 0.99185 0.92936 0.91794 0.96518 0.91285 0.91645 0.91795 0.92842 0.93361 0.92666 0.92590 0.93570 0.92876 0.92091 0.92789 0.86953 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.10 -1.29 5.88 -104.62 -0.62 -1.90 16 3 C -0.13 -1.80 9.70 -39.59 -0.38 -2.19 16 4 C -0.11 -1.72 8.93 -39.58 -0.35 -2.07 16 5 C -0.07 -1.20 4.45 -104.62 -0.47 -1.67 16 6 C 0.10 1.91 4.10 -4.98 -0.02 1.89 16 7 N -0.53 -10.93 3.36 -237.52 -0.80 -11.73 16 8 C 0.19 4.74 4.59 -4.97 -0.02 4.72 16 9 C -0.51 -13.64 8.20 -34.44 -0.28 -13.92 16 10 H 0.07 1.72 5.67 -52.49 -0.30 1.43 16 11 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 12 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C 0.06 1.02 4.58 -3.83 -0.02 1.00 16 18 C -0.11 -1.85 4.63 -26.73 -0.12 -1.98 16 19 C -0.10 -1.34 2.92 -90.62 -0.26 -1.60 16 20 C -0.14 -1.82 9.19 37.15 0.34 -1.47 16 21 C -0.14 -1.82 8.95 37.16 0.33 -1.49 16 22 C -0.05 -0.81 5.88 -104.63 -0.62 -1.43 16 23 C -0.13 -2.22 9.36 36.00 0.34 -1.89 16 24 C -0.13 -1.86 9.36 -39.58 -0.37 -2.23 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.11 1.59 7.99 -52.48 -0.42 1.17 16 30 H 0.09 2.00 6.27 -51.93 -0.33 1.68 16 31 H 0.02 0.48 7.91 -51.93 -0.41 0.07 16 32 H 0.04 0.95 6.06 -51.93 -0.31 0.64 16 33 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.06 1.10 4.90 -51.93 -0.25 0.84 16 36 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.07 1.32 6.35 -51.93 -0.33 0.99 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 48 H 0.11 2.23 4.20 -51.93 -0.22 2.01 16 49 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -28.11 377.81 -10.45 -38.56 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.80 Total: 2.15 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -2.26 Total: -25.45 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.06 Total: -37.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.11 -10.45 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657466597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds