Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00243 * 2 1 4 4 C 1.38209 * 120.00457 * 179.76484 * 3 2 1 5 5 C 1.38262 * 119.99874 * 0.53161 * 4 3 2 6 6 C 1.50696 * 120.00239 * 179.74348 * 5 4 3 7 7 N 1.46902 * 109.47044 * 253.72008 * 6 5 4 8 8 C 1.46901 * 110.99940 * 190.98862 * 7 6 5 9 9 C 1.50703 * 109.47058 * 66.89951 * 8 7 6 10 10 H 1.08000 * 119.99858 * 5.01574 * 9 8 7 11 11 C 1.37883 * 119.99972 * 185.02341 * 9 8 7 12 12 N 1.31505 * 119.99792 * 354.69515 * 11 9 8 13 13 Si 1.86799 * 119.99834 * 174.69825 * 11 9 8 14 14 H 1.48491 * 109.47272 * 65.00059 * 13 11 9 15 15 H 1.48501 * 109.46921 * 185.00065 * 13 11 9 16 16 H 1.48504 * 109.47129 * 304.99762 * 13 11 9 17 17 C 1.46895 * 110.99878 * 67.03368 * 7 6 5 18 18 C 1.53001 * 109.47017 * 189.99692 * 17 7 6 19 19 C 1.53004 * 109.47306 * 180.02562 * 18 17 7 20 20 C 1.52988 * 109.47337 * 175.00336 * 19 18 17 21 21 C 1.53003 * 109.46623 * 295.00577 * 19 18 17 22 22 C 1.38215 * 119.99619 * 359.46359 * 5 4 3 23 23 C 1.50698 * 119.99805 * 180.27662 * 22 5 4 24 24 C 1.38220 * 119.99999 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47324 * 269.98026 * 1 2 3 26 26 H 1.08998 * 109.46942 * 29.98198 * 1 2 3 27 27 H 1.08997 * 109.46963 * 149.98206 * 1 2 3 28 28 H 1.08006 * 119.99538 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.00484 * 180.27562 * 4 3 2 30 30 H 1.09000 * 109.47064 * 133.71575 * 6 5 4 31 31 H 1.09002 * 109.46874 * 13.71967 * 6 5 4 32 32 H 1.08998 * 109.47243 * 186.89651 * 8 7 6 33 33 H 1.08998 * 109.47197 * 306.90275 * 8 7 6 34 34 H 0.97006 * 120.00289 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.47398 * 310.00180 * 17 7 6 36 36 H 1.09006 * 109.47109 * 70.00123 * 17 7 6 37 37 H 1.08996 * 109.47434 * 300.00466 * 18 17 7 38 38 H 1.09006 * 109.46829 * 60.00260 * 18 17 7 39 39 H 1.08993 * 109.46875 * 54.99930 * 19 18 17 40 40 H 1.09007 * 109.47576 * 59.99813 * 20 19 18 41 41 H 1.08994 * 109.47335 * 179.97438 * 20 19 18 42 42 H 1.09006 * 109.47587 * 300.00347 * 20 19 18 43 43 H 1.08995 * 109.47663 * 60.00207 * 21 19 18 44 44 H 1.09004 * 109.46640 * 179.97438 * 21 19 18 45 45 H 1.09001 * 109.47059 * 299.98940 * 21 19 18 46 46 H 1.08992 * 109.47210 * 90.64122 * 23 22 5 47 47 H 1.09005 * 109.46868 * 210.64160 * 23 22 5 48 48 H 1.09001 * 109.47504 * 330.64136 * 23 22 5 49 49 H 1.08000 * 120.00163 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2718 0.0000 -0.0013 6 6 5.7787 0.0000 -0.0018 7 7 6.2679 -0.3817 -1.3333 8 6 7.7127 -0.6461 -1.3075 9 6 7.9836 -1.8760 -0.4799 10 1 7.1605 -2.4543 -0.0867 11 6 9.2821 -2.2630 -0.2246 12 7 10.2822 -1.6214 -0.7881 13 14 9.6207 -3.6987 0.9215 14 1 9.0851 -4.9473 0.3224 15 1 11.0854 -3.8355 1.1241 16 1 8.9608 -3.4544 2.2292 17 6 5.9386 0.6463 -2.3297 18 6 6.2358 0.1111 -3.7319 19 6 5.8934 1.1820 -4.7697 20 6 6.3062 0.6952 -6.1601 21 6 4.3870 1.4488 -4.7491 22 6 3.5807 -1.1970 -0.0012 23 6 4.3342 -2.5021 -0.0016 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6582 2.1326 0.0004 29 1 4.1204 2.1326 0.0094 30 1 6.1423 -0.7139 0.7373 31 1 6.1421 0.9971 0.2468 32 1 8.0710 -0.8063 -2.3244 33 1 8.2305 0.2075 -0.8700 34 1 11.1958 -1.8938 -0.6089 35 1 4.8812 0.8999 -2.2542 36 1 6.5399 1.5366 -2.1456 37 1 7.2932 -0.1425 -3.8074 38 1 5.6345 -0.7792 -3.9160 39 1 6.4285 2.1016 -4.5330 40 1 5.7711 -0.2245 -6.3969 41 1 6.0618 1.4579 -6.8994 42 1 7.3794 0.5050 -6.1748 43 1 4.0929 1.7957 -3.7585 44 1 4.1431 2.2120 -5.4881 45 1 3.8518 0.5292 -4.9859 46 1 4.5063 -2.8226 1.0258 47 1 3.7499 -3.2587 -0.5253 48 1 5.2914 -2.3689 -0.5058 49 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657466597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -17.765440 kcal Electronic energy + Delta-G solvation = -23919.133140 eV Core-core repulsion = 20844.184479 eV Total energy + Delta-G solvation = -3074.948660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72825 -38.81631 -36.80393 -34.84756 -34.11432 -32.91395 -30.52553 -29.69480 -28.02495 -27.95972 -27.38696 -25.10488 -24.52832 -22.87150 -21.84001 -20.75608 -20.64704 -18.62916 -17.03752 -16.79419 -16.62901 -16.18532 -15.71708 -15.59025 -15.45502 -15.13719 -14.66735 -14.34521 -14.28796 -13.95689 -13.89749 -13.73609 -13.61392 -13.32484 -13.14269 -13.03716 -12.97310 -12.70448 -12.62791 -12.56059 -12.47465 -12.22367 -12.14414 -12.02870 -11.70579 -11.59544 -11.48163 -11.40977 -11.22094 -11.13381 -10.52394 -9.54850 -9.23924 -8.93522 -8.17072 -6.24624 0.51201 0.59076 1.41260 1.43469 1.50992 2.41521 2.84261 3.15964 3.41296 3.92161 3.97323 4.00025 4.06107 4.13124 4.17033 4.22618 4.34786 4.46054 4.57335 4.61153 4.68626 4.72605 4.78256 4.83472 4.85701 4.87455 4.90308 4.92444 4.94412 4.99614 5.06327 5.11075 5.14700 5.16919 5.21341 5.27297 5.33165 5.34161 5.40640 5.50517 5.52532 5.55710 5.67442 5.76697 5.78887 5.97592 6.12584 6.24584 6.38285 6.68701 6.92385 7.44162 8.94052 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005978 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.750026 B = 4682.616576 C = 6760.205823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.092 4.092 6 C 0.107 3.893 7 N -0.526 5.526 8 C 0.207 3.793 9 C -0.518 4.518 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.959 3.041 14 H -0.268 1.268 15 H -0.286 1.286 16 H -0.268 1.268 17 C 0.061 3.939 18 C -0.102 4.102 19 C -0.093 4.093 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.066 4.066 23 C -0.127 4.127 24 C -0.132 4.132 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.017 0.983 32 H 0.012 0.988 33 H -0.045 1.045 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.007 0.993 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 5.308 -2.678 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.093 4.093 6 C -0.021 4.021 7 N -0.250 5.250 8 C 0.081 3.919 9 C -0.556 4.556 10 H 0.089 0.911 11 C -0.193 4.193 12 N -0.575 5.575 13 Si 0.784 3.216 14 H -0.193 1.193 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.067 4.067 18 C -0.139 4.139 19 C -0.112 4.112 20 C -0.199 4.199 21 C -0.196 4.196 22 C -0.067 4.067 23 C -0.184 4.184 24 C -0.150 4.150 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.030 0.970 33 H -0.027 1.027 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.436 4.872 -2.828 19.277 hybrid contribution 1.660 0.088 0.868 1.875 sum -16.776 4.960 -1.960 17.603 Atomic orbital electron populations 1.20793 0.89083 1.03549 1.02988 1.20206 0.97468 0.92592 0.98853 1.21162 0.93289 0.98516 1.01905 1.21144 0.95051 0.96877 1.00603 1.19737 0.94332 0.93665 1.01523 1.20786 0.91188 0.97985 0.92123 1.62058 1.16011 1.41964 1.04943 1.19427 0.82775 0.93999 0.95681 1.21517 0.92111 1.10369 1.31627 0.91089 1.25831 0.96060 0.99743 0.97711 1.70092 0.99372 1.43267 1.44793 0.85584 0.76833 0.79643 0.79522 1.19284 1.21183 1.19270 1.22126 1.00247 0.91876 0.92428 1.21558 1.00169 0.98652 0.93566 1.21074 0.97494 0.97632 0.94963 1.21790 1.00747 1.01566 0.95816 1.21800 0.94299 1.01731 1.01723 1.19858 0.94050 0.94887 0.97863 1.20975 1.01662 0.93910 1.01818 1.21114 0.92791 0.98670 1.02450 0.90379 0.90475 0.90951 0.84053 0.86176 0.91238 0.96444 0.96963 1.02744 0.92923 0.90051 0.97474 0.94374 0.92310 0.91902 0.92597 0.91050 0.93731 0.93128 0.91320 0.92808 0.91965 0.91204 0.90367 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.94 16 2 C -0.09 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.13 -3.12 9.70 22.27 0.22 -2.91 16 4 C -0.12 -3.41 8.93 22.27 0.20 -3.21 16 5 C -0.09 -3.15 4.45 -19.87 -0.09 -3.24 16 6 C 0.11 4.36 4.10 85.56 0.35 4.71 16 7 N -0.53 -23.01 3.36 -905.37 -3.04 -26.06 16 8 C 0.21 11.10 4.59 85.56 0.39 11.50 16 9 C -0.52 -29.03 8.20 25.60 0.21 -28.82 16 10 H 0.07 3.84 5.67 -2.91 -0.02 3.83 16 11 C 0.00 0.25 5.45 84.66 0.46 0.72 16 12 N -0.93 -56.65 13.29 21.45 0.29 -56.36 16 13 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C 0.06 2.30 4.58 86.30 0.39 2.70 16 18 C -0.10 -3.60 4.63 30.60 0.14 -3.46 16 19 C -0.09 -2.53 2.92 -10.80 -0.03 -2.56 16 20 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 21 C -0.14 -3.20 8.95 71.98 0.64 -2.56 16 22 C -0.07 -2.15 5.88 -19.87 -0.12 -2.26 16 23 C -0.13 -4.31 9.36 71.24 0.67 -3.65 16 24 C -0.13 -3.52 9.36 22.27 0.21 -3.31 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 0.98 8.09 -2.39 -0.02 0.97 16 27 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 28 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.12 3.23 7.99 -2.91 -0.02 3.21 16 30 H 0.07 3.13 6.27 -2.39 -0.01 3.12 16 31 H 0.02 0.71 7.91 -2.39 -0.02 0.70 16 32 H 0.01 0.71 6.06 -2.39 -0.01 0.70 16 33 H -0.05 -2.68 8.11 -2.39 -0.02 -2.70 16 34 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 35 H 0.08 2.80 4.90 -2.39 -0.01 2.79 16 36 H 0.01 0.28 8.12 -2.38 -0.02 0.26 16 37 H 0.04 1.57 6.35 -2.39 -0.02 1.55 16 38 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.07 2.06 8.09 -2.38 -0.02 2.04 16 48 H 0.08 3.21 4.20 -2.39 -0.01 3.20 16 49 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -63.41 377.81 5.07 -58.34 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.89 Total: 19.94 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 4.91 Total: -42.29 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.76 Total: -82.42 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.41 5.07 -58.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657466597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.576 kcal (2) G-P(sol) polarization free energy of solvation -63.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds