Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.52999 * 109.46743 * 240.00693 * 2 1 3 5 5 C 1.50701 * 109.47471 * 64.99943 * 4 2 1 6 6 H 1.08005 * 119.99945 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00127 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47401 * 89.99756 * 9 7 5 11 11 H 1.48499 * 109.47096 * 209.99809 * 9 7 5 12 12 H 1.48499 * 109.46779 * 329.99588 * 9 7 5 13 13 C 1.52992 * 109.47414 * 120.00396 * 2 1 3 14 14 N 1.46900 * 109.47417 * 295.38267 * 13 2 1 15 15 C 1.46901 * 110.99784 * 293.28017 * 14 13 2 16 16 C 1.50704 * 109.47127 * 169.79286 * 15 14 13 17 17 C 1.38230 * 120.00153 * 115.13437 * 16 15 14 18 18 C 1.38230 * 119.99924 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.00205 * 0.07847 * 18 17 16 20 20 C 1.38236 * 120.00112 * 359.90406 * 19 18 17 21 21 C 1.38236 * 119.99808 * 0.04493 * 20 19 18 22 22 C 1.46899 * 111.00244 * 169.32597 * 14 13 2 23 23 C 1.53001 * 109.47142 * 207.07437 * 22 14 13 24 24 C 1.53007 * 109.46958 * 327.07386 * 22 14 13 25 25 C 1.52996 * 109.47388 * 87.07283 * 22 14 13 26 26 H 1.09002 * 109.46859 * 304.16005 * 1 2 3 27 27 H 1.08998 * 109.47404 * 64.15678 * 1 2 3 28 28 H 1.08994 * 109.47229 * 184.16379 * 1 2 3 29 29 H 1.09004 * 109.47344 * 184.99591 * 4 2 1 30 30 H 1.08996 * 109.47090 * 304.99522 * 4 2 1 31 31 H 0.96995 * 120.00222 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47236 * 175.37914 * 13 2 1 33 33 H 1.09002 * 109.47389 * 55.38339 * 13 2 1 34 34 H 1.08998 * 109.47273 * 49.79191 * 15 14 13 35 35 H 1.09004 * 109.46928 * 289.79266 * 15 14 13 36 36 H 1.07999 * 119.99745 * 359.70752 * 17 16 15 37 37 H 1.08002 * 120.00240 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00237 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00419 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.00468 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46694 * 51.46986 * 23 22 14 42 42 H 1.08997 * 109.46991 * 171.46477 * 23 22 14 43 43 H 1.08992 * 109.47233 * 291.46794 * 23 22 14 44 44 H 1.08995 * 109.46773 * 69.22862 * 24 22 14 45 45 H 1.08996 * 109.47052 * 189.22948 * 24 22 14 46 46 H 1.08999 * 109.46737 * 309.22419 * 24 22 14 47 47 H 1.09000 * 109.46841 * 71.87113 * 25 22 14 48 48 H 1.09000 * 109.47219 * 191.87274 * 25 22 14 49 49 H 1.09002 * 109.47023 * 311.87279 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0798 0.9744 -2.3757 7 6 1.9931 -0.4013 -3.7284 8 7 1.6447 0.2777 -4.7994 9 14 2.9634 -1.9880 -3.9031 10 1 2.0242 -3.1322 -4.0204 11 1 3.8123 -1.9176 -5.1195 12 1 3.8250 -2.1753 -2.7082 13 6 2.0401 -0.7213 1.2491 14 7 1.6436 0.0324 2.4461 15 6 2.3312 1.3293 2.5032 16 6 1.7223 2.1732 3.5933 17 6 2.4771 2.5284 4.6955 18 6 1.9186 3.3029 5.6950 19 6 0.6050 3.7208 5.5932 20 6 -0.1498 3.3658 4.4908 21 6 0.4089 2.5922 3.4907 22 6 1.8903 -0.7484 3.6656 23 6 0.9177 -0.3053 4.7604 24 6 1.6825 -2.2352 3.3700 25 6 3.3276 -0.5182 4.1367 26 1 -0.3633 0.5771 0.8504 27 1 -0.3634 0.4480 -0.9249 28 1 -0.3633 -1.0249 0.0746 29 1 3.1263 -0.7993 -1.2058 30 1 1.6053 -1.7196 -1.2953 31 1 1.8925 -0.0447 -5.6800 32 1 3.1270 -0.7935 1.2086 33 1 1.6108 -1.7223 1.2914 34 1 2.2243 1.8397 1.5460 35 1 3.3888 1.1708 2.7143 36 1 3.5017 2.1972 4.7777 37 1 2.5082 3.5801 6.5564 38 1 0.1685 4.3255 6.3744 39 1 -1.1761 3.6927 4.4110 40 1 -0.1805 2.3153 2.6292 41 1 -0.1005 -0.3261 4.3719 42 1 0.9957 -0.9819 5.6114 43 1 1.1649 0.7077 5.0778 44 1 2.4776 -2.5897 2.7141 45 1 1.7036 -2.7976 4.3034 46 1 0.7183 -2.3772 2.8820 47 1 3.4192 0.4882 4.5452 48 1 3.5788 -1.2473 4.9070 49 1 4.0089 -0.6313 3.2933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657567708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = 23.936508 kcal Electronic energy + Delta-G solvation = -24354.668020 eV Core-core repulsion = 21281.527692 eV Total energy + Delta-G solvation = -3073.140328 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27851 -38.29024 -35.34687 -32.90916 -32.25393 -30.96712 -30.54263 -27.97611 -27.26568 -27.20958 -25.60744 -24.46318 -22.51359 -22.02922 -21.29324 -18.99270 -18.41828 -16.87892 -16.72591 -15.95212 -15.35528 -15.11981 -14.75044 -14.61884 -14.13830 -13.72759 -13.52252 -13.34489 -13.09223 -12.95941 -12.72002 -12.60651 -12.31260 -12.05918 -11.83492 -11.64122 -11.56709 -11.46533 -11.27336 -11.00703 -10.91856 -10.87313 -10.81095 -10.62703 -10.50948 -10.35682 -9.71448 -9.64904 -9.34254 -9.02510 -8.86965 -8.53800 -8.49091 -7.96438 -5.99801 -3.96368 1.36655 1.44202 3.32595 3.40060 3.43430 3.74812 4.17962 4.48661 4.81563 4.83582 4.93446 4.99004 5.02011 5.13646 5.24029 5.33785 5.42938 5.48069 5.54579 5.55266 5.65410 5.70689 5.77341 5.79742 5.88448 5.89135 5.94737 5.97663 6.05526 6.09583 6.13300 6.16157 6.28072 6.38117 6.42530 6.46782 6.51250 6.53976 6.66377 6.71851 6.88235 7.02506 7.07672 7.19952 7.32519 7.39741 7.45226 7.54915 7.85891 8.60141 9.06279 9.63409 11.13700 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.004177 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.696637 B = 6702.029785 C = 7387.611822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.060 0.940 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.050 3.950 14 N -0.515 5.515 15 C 0.079 3.921 16 C -0.059 4.059 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.092 4.092 22 C 0.105 3.895 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.184 4.184 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 1.653 22.827 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.077 4.077 14 N -0.239 5.239 15 C -0.048 4.048 16 C -0.059 4.059 17 C -0.142 4.142 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.110 4.110 22 C 0.015 3.985 23 C -0.199 4.199 24 C -0.205 4.205 25 C -0.242 4.242 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.174 1.717 22.589 22.655 hybrid contribution 1.451 -1.037 -0.210 1.796 sum 1.277 0.680 22.380 22.426 Atomic orbital electron populations 1.21583 0.95350 1.00308 1.00772 1.21048 0.96276 0.99058 0.92741 0.92126 1.19608 0.95623 0.95878 0.93577 1.21134 1.35104 1.09552 0.89084 0.90838 1.25022 0.95684 0.96873 0.95978 1.69916 1.47261 1.39350 0.97984 0.86818 0.80660 0.84472 0.77548 1.20391 1.21552 1.19165 1.22527 0.97468 0.98140 0.89570 1.62317 1.57318 1.02673 1.01567 1.21244 0.95557 0.90147 0.97866 1.19799 0.94335 0.96797 0.95005 1.21056 0.99712 0.99264 0.94184 1.21027 0.95526 0.98883 0.98854 1.21070 0.94569 1.00799 0.98267 1.21166 0.99797 0.98656 0.94401 1.21079 0.94715 0.96250 0.98976 1.21015 0.93467 0.93139 0.90839 1.22081 0.99555 1.01756 0.96502 1.22098 1.02487 0.94628 1.01298 1.22654 0.97684 1.02541 1.01327 0.93834 0.92215 0.94410 0.97077 0.97154 0.92875 0.95558 0.90217 0.88870 0.93568 0.86379 0.86610 0.86666 0.86382 0.85480 0.92169 0.93606 0.91361 0.92472 0.92744 0.91504 0.91412 0.92709 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.90 37.16 0.33 -1.98 16 2 C -0.07 -1.40 2.28 -90.62 -0.21 -1.60 16 3 H 0.06 1.21 6.21 -51.93 -0.32 0.89 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.37 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 2.22 7.32 -52.48 -0.38 1.84 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.05 0.80 3.38 -3.83 -0.01 0.78 16 14 N -0.52 -7.05 3.83 -220.40 -0.84 -7.89 16 15 C 0.08 1.05 4.60 -4.97 -0.02 1.03 16 16 C -0.06 -0.71 3.01 -104.62 -0.32 -1.03 16 17 C -0.12 -1.33 6.99 -39.59 -0.28 -1.61 16 18 C -0.12 -1.23 10.01 -39.59 -0.40 -1.63 16 19 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.09 -1.11 9.02 -39.58 -0.36 -1.47 16 22 C 0.10 1.26 0.73 -131.60 -0.10 1.16 16 23 C -0.14 -1.63 7.86 37.16 0.29 -1.34 16 24 C -0.15 -1.73 7.08 37.16 0.26 -1.46 16 25 C -0.18 -2.03 7.11 37.16 0.26 -1.77 16 26 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 27 H 0.06 1.26 6.84 -51.93 -0.36 0.91 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.03 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.08 1.26 5.50 -51.93 -0.29 0.97 16 34 H 0.09 1.39 6.04 -51.93 -0.31 1.08 16 35 H 0.05 0.59 5.59 -51.93 -0.29 0.30 16 36 H 0.12 1.14 6.44 -52.49 -0.34 0.81 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 43 H 0.07 0.80 4.11 -51.93 -0.21 0.58 16 44 H 0.06 0.69 6.99 -51.93 -0.36 0.33 16 45 H 0.05 0.55 8.06 -51.93 -0.42 0.14 16 46 H 0.07 0.83 7.59 -51.93 -0.39 0.44 16 47 H 0.07 0.71 3.68 -51.93 -0.19 0.52 16 48 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 49 H 0.05 0.65 7.09 -51.93 -0.37 0.28 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -29.68 359.68 -9.50 -39.18 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.35 Total: 0.78 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -1.83 Total: -27.46 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.07 Total: -35.13 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.68 -9.50 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657567708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.116 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds