Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.52999 * 109.46743 * 240.00693 * 2 1 3 5 5 C 1.50701 * 109.47471 * 64.99943 * 4 2 1 6 6 H 1.08005 * 119.99945 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00127 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47401 * 89.99756 * 9 7 5 11 11 H 1.48499 * 109.47096 * 209.99809 * 9 7 5 12 12 H 1.48499 * 109.46779 * 329.99588 * 9 7 5 13 13 C 1.52992 * 109.47414 * 120.00396 * 2 1 3 14 14 N 1.46900 * 109.47417 * 295.38267 * 13 2 1 15 15 C 1.46901 * 110.99784 * 293.28017 * 14 13 2 16 16 C 1.50704 * 109.47127 * 169.79286 * 15 14 13 17 17 C 1.38230 * 120.00153 * 115.13437 * 16 15 14 18 18 C 1.38230 * 119.99924 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.00205 * 0.07847 * 18 17 16 20 20 C 1.38236 * 120.00112 * 359.90406 * 19 18 17 21 21 C 1.38236 * 119.99808 * 0.04493 * 20 19 18 22 22 C 1.46899 * 111.00244 * 169.32597 * 14 13 2 23 23 C 1.53001 * 109.47142 * 207.07437 * 22 14 13 24 24 C 1.53007 * 109.46958 * 327.07386 * 22 14 13 25 25 C 1.52996 * 109.47388 * 87.07283 * 22 14 13 26 26 H 1.09002 * 109.46859 * 304.16005 * 1 2 3 27 27 H 1.08998 * 109.47404 * 64.15678 * 1 2 3 28 28 H 1.08994 * 109.47229 * 184.16379 * 1 2 3 29 29 H 1.09004 * 109.47344 * 184.99591 * 4 2 1 30 30 H 1.08996 * 109.47090 * 304.99522 * 4 2 1 31 31 H 0.96995 * 120.00222 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47236 * 175.37914 * 13 2 1 33 33 H 1.09002 * 109.47389 * 55.38339 * 13 2 1 34 34 H 1.08998 * 109.47273 * 49.79191 * 15 14 13 35 35 H 1.09004 * 109.46928 * 289.79266 * 15 14 13 36 36 H 1.07999 * 119.99745 * 359.70752 * 17 16 15 37 37 H 1.08002 * 120.00240 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00237 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00419 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.00468 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.46694 * 51.46986 * 23 22 14 42 42 H 1.08997 * 109.46991 * 171.46477 * 23 22 14 43 43 H 1.08992 * 109.47233 * 291.46794 * 23 22 14 44 44 H 1.08995 * 109.46773 * 69.22862 * 24 22 14 45 45 H 1.08996 * 109.47052 * 189.22948 * 24 22 14 46 46 H 1.08999 * 109.46737 * 309.22419 * 24 22 14 47 47 H 1.09000 * 109.46841 * 71.87113 * 25 22 14 48 48 H 1.09000 * 109.47219 * 191.87274 * 25 22 14 49 49 H 1.09002 * 109.47023 * 311.87279 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4766 6 1 1.0798 0.9744 -2.3757 7 6 1.9931 -0.4013 -3.7284 8 7 1.6447 0.2777 -4.7994 9 14 2.9634 -1.9880 -3.9031 10 1 2.0242 -3.1322 -4.0204 11 1 3.8123 -1.9176 -5.1195 12 1 3.8250 -2.1753 -2.7082 13 6 2.0401 -0.7213 1.2491 14 7 1.6436 0.0324 2.4461 15 6 2.3312 1.3293 2.5032 16 6 1.7223 2.1732 3.5933 17 6 2.4771 2.5284 4.6955 18 6 1.9186 3.3029 5.6950 19 6 0.6050 3.7208 5.5932 20 6 -0.1498 3.3658 4.4908 21 6 0.4089 2.5922 3.4907 22 6 1.8903 -0.7484 3.6656 23 6 0.9177 -0.3053 4.7604 24 6 1.6825 -2.2352 3.3700 25 6 3.3276 -0.5182 4.1367 26 1 -0.3633 0.5771 0.8504 27 1 -0.3634 0.4480 -0.9249 28 1 -0.3633 -1.0249 0.0746 29 1 3.1263 -0.7993 -1.2058 30 1 1.6053 -1.7196 -1.2953 31 1 1.8925 -0.0447 -5.6800 32 1 3.1270 -0.7935 1.2086 33 1 1.6108 -1.7223 1.2914 34 1 2.2243 1.8397 1.5460 35 1 3.3888 1.1708 2.7143 36 1 3.5017 2.1972 4.7777 37 1 2.5082 3.5801 6.5564 38 1 0.1685 4.3255 6.3744 39 1 -1.1761 3.6927 4.4110 40 1 -0.1805 2.3153 2.6292 41 1 -0.1005 -0.3261 4.3719 42 1 0.9957 -0.9819 5.6114 43 1 1.1649 0.7077 5.0778 44 1 2.4776 -2.5897 2.7141 45 1 1.7036 -2.7976 4.3034 46 1 0.7183 -2.3772 2.8820 47 1 3.4192 0.4882 4.5452 48 1 3.5788 -1.2473 4.9070 49 1 4.0089 -0.6313 3.2933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657567708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = 8.848650 kcal Electronic energy + Delta-G solvation = -24355.322279 eV Core-core repulsion = 21281.527692 eV Total energy + Delta-G solvation = -3073.794587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25353 -39.24743 -36.92337 -34.50580 -33.66772 -31.98847 -31.60447 -29.39899 -28.65551 -28.13797 -26.78791 -25.77706 -23.83709 -23.30192 -22.18170 -20.57011 -19.48293 -18.84501 -17.74198 -17.03824 -16.44601 -16.22673 -16.03651 -15.71727 -15.58253 -15.12732 -14.84905 -14.42300 -14.38516 -14.13546 -13.91968 -13.60019 -13.53988 -13.44829 -13.05000 -12.84503 -12.82024 -12.67798 -12.50530 -12.39442 -12.24861 -12.19324 -11.87095 -11.78637 -11.70117 -11.68533 -11.42286 -11.28382 -11.09743 -10.92947 -10.72697 -9.69174 -9.40539 -9.06316 -8.25339 -6.27319 0.53665 0.61623 1.35545 1.36987 1.48714 2.37868 2.83688 3.09958 3.17222 3.88523 3.93848 4.01011 4.12042 4.16865 4.25009 4.29615 4.35768 4.38326 4.47291 4.54784 4.63487 4.71126 4.74628 4.79466 4.80355 4.88003 4.91267 4.95852 4.99383 5.03954 5.08029 5.09047 5.14947 5.22081 5.25921 5.26829 5.36631 5.41783 5.45752 5.55225 5.58462 5.67661 5.72274 5.73892 5.75332 5.84093 6.19413 6.26314 6.36861 6.40207 6.80256 7.36078 8.91557 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.004177 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.696637 B = 6702.029785 C = 7387.611822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 H 0.047 0.953 4 C -0.005 4.005 5 C -0.516 4.516 6 H 0.033 0.967 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.064 3.936 14 N -0.518 5.518 15 C 0.082 3.918 16 C -0.068 4.068 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.109 4.109 22 C 0.103 3.897 23 C -0.135 4.135 24 C -0.147 4.147 25 C -0.180 4.180 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 0.454 25.927 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.043 4.043 5 C -0.554 4.554 6 H 0.052 0.948 7 C -0.194 4.194 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.064 4.064 14 N -0.242 5.242 15 C -0.045 4.045 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.128 4.128 22 C 0.014 3.986 23 C -0.192 4.192 24 C -0.204 4.204 25 C -0.238 4.238 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.849 0.521 25.718 25.737 hybrid contribution 1.059 -0.534 -1.129 1.638 sum 1.909 -0.013 24.588 24.662 Atomic orbital electron populations 1.21450 0.95098 1.00645 0.99691 1.20910 0.96391 0.98327 0.92972 0.93474 1.19547 0.95654 0.95733 0.93351 1.21440 1.34128 1.08619 0.91235 0.94848 1.25981 0.97018 1.00882 0.95518 1.70076 1.49144 1.41667 0.98688 0.85707 0.79375 0.79672 0.78179 1.19267 1.21224 1.17147 1.22254 0.97151 0.98007 0.88977 1.62259 1.57501 1.02840 1.01573 1.21164 0.96026 0.89975 0.97337 1.19676 0.94490 0.97401 0.95305 1.21197 1.00108 0.99337 0.93873 1.21353 0.95744 0.97882 0.99175 1.21392 0.94588 1.00358 0.98280 1.21360 1.00635 0.98292 0.94341 1.21039 0.94957 0.97581 0.99211 1.21110 0.94429 0.93097 0.89977 1.22013 0.98512 1.02102 0.96589 1.22090 1.01750 0.94479 1.02116 1.22606 0.96484 1.03375 1.01338 0.92083 0.95600 0.93667 0.96900 0.96557 0.92724 0.95687 0.89563 0.91382 0.93015 0.85270 0.84100 0.84243 0.85154 0.87226 0.93464 0.92117 0.91437 0.92878 0.90887 0.92444 0.90872 0.91249 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.90 71.98 0.64 -3.66 16 2 C -0.07 -2.64 2.28 -10.80 -0.02 -2.66 16 3 H 0.05 1.97 6.21 -2.39 -0.01 1.96 16 4 C 0.00 -0.23 3.52 29.85 0.10 -0.13 16 5 C -0.52 -30.06 8.90 25.60 0.23 -29.83 16 6 H 0.03 2.15 7.32 -2.91 -0.02 2.13 16 7 C 0.00 0.12 5.47 84.65 0.46 0.58 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 13 C 0.06 1.99 3.38 86.30 0.29 2.28 16 14 N -0.52 -13.82 3.83 -851.20 -3.26 -17.08 16 15 C 0.08 2.18 4.60 85.56 0.39 2.57 16 16 C -0.07 -1.60 3.01 -19.86 -0.06 -1.66 16 17 C -0.13 -2.46 6.99 22.27 0.16 -2.31 16 18 C -0.12 -2.06 10.01 22.27 0.22 -1.84 16 19 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 20 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 21 C -0.11 -2.64 9.02 22.27 0.20 -2.44 16 22 C 0.10 2.27 0.73 3.53 0.00 2.27 16 23 C -0.13 -2.81 7.86 71.98 0.57 -2.24 16 24 C -0.15 -3.10 7.08 71.98 0.51 -2.59 16 25 C -0.18 -3.54 7.11 71.98 0.51 -3.02 16 26 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 27 H 0.02 1.14 6.84 -2.39 -0.02 1.12 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 30 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 31 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.02 0.79 7.66 -2.38 -0.02 0.77 16 33 H 0.09 2.60 5.50 -2.39 -0.01 2.59 16 34 H 0.07 2.12 6.04 -2.39 -0.01 2.11 16 35 H 0.05 1.29 5.59 -2.38 -0.01 1.28 16 36 H 0.13 2.17 6.44 -2.91 -0.02 2.16 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.08 8.06 -2.39 -0.02 1.06 16 43 H 0.07 1.43 4.11 -2.39 -0.01 1.42 16 44 H 0.05 1.16 6.99 -2.39 -0.02 1.14 16 45 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 46 H 0.06 1.32 7.59 -2.39 -0.02 1.30 16 47 H 0.07 1.35 3.68 -2.39 -0.01 1.34 16 48 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 49 H 0.04 0.97 7.09 -2.39 -0.02 0.95 16 Total: -1.00 -65.55 359.68 4.42 -61.13 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.85 Total: 18.60 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 4.65 Total: -48.96 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.96 Total: -77.71 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -65.55 4.42 -61.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657567708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.978 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds