Wall clock time and date at job start Tue Mar 31 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38237 * 120.00218 * 2 1 4 4 C 1.38227 * 120.00327 * 180.34630 * 3 2 1 5 5 C 1.38233 * 120.00139 * 359.90551 * 4 3 2 6 6 C 1.50700 * 119.99983 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47283 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47412 * 59.97863 * 6 5 4 9 9 C 1.53000 * 109.47182 * 299.97361 * 6 5 4 10 10 N 1.46904 * 109.47097 * 184.53411 * 9 6 5 11 11 C 1.46905 * 110.99431 * 75.97061 * 10 9 6 12 12 C 1.50701 * 109.46708 * 189.99934 * 11 10 9 13 13 H 1.07995 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99600 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00536 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47358 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46965 * 120.00108 * 16 14 12 19 19 H 1.48496 * 109.47139 * 239.99682 * 16 14 12 20 20 C 1.46901 * 111.00004 * 199.92033 * 10 9 6 21 21 C 1.52995 * 109.47068 * 76.16661 * 20 10 9 22 22 C 1.53008 * 109.47049 * 63.90081 * 21 20 10 23 23 C 1.52996 * 109.47628 * 183.89884 * 21 20 10 24 24 C 1.38230 * 119.99945 * 0.04531 * 5 4 3 25 25 C 1.38232 * 120.00170 * 0.02562 * 24 5 4 26 26 H 1.09003 * 109.47542 * 269.72493 * 1 2 3 27 27 H 1.09004 * 109.47432 * 29.73011 * 1 2 3 28 28 H 1.09004 * 109.47384 * 149.72567 * 1 2 3 29 29 H 1.08002 * 119.99523 * 0.27443 * 3 2 1 30 30 H 1.08003 * 120.00345 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47400 * 54.57221 * 8 6 5 32 32 H 1.09003 * 109.47385 * 174.57447 * 8 6 5 33 33 H 1.09002 * 109.47057 * 294.57281 * 8 6 5 34 34 H 1.08998 * 109.47270 * 304.54023 * 9 6 5 35 35 H 1.09000 * 109.46445 * 64.53928 * 9 6 5 36 36 H 1.09000 * 109.47402 * 309.99719 * 11 10 9 37 37 H 1.09003 * 109.47153 * 69.99944 * 11 10 9 38 38 H 0.96997 * 120.00433 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.46846 * 196.16982 * 20 10 9 40 40 H 1.09004 * 109.46848 * 316.17089 * 20 10 9 41 41 H 1.08998 * 109.47424 * 303.90431 * 21 20 10 42 42 H 1.09000 * 109.47355 * 180.02562 * 22 21 20 43 43 H 1.09010 * 109.46967 * 300.00022 * 22 21 20 44 44 H 1.08998 * 109.46749 * 59.99365 * 22 21 20 45 45 H 1.09006 * 109.46984 * 59.99766 * 23 21 20 46 46 H 1.08992 * 109.47987 * 180.02562 * 23 21 20 47 47 H 1.08998 * 109.46697 * 300.00958 * 23 21 20 48 48 H 1.08002 * 120.00393 * 180.02562 * 24 5 4 49 49 H 1.07999 * 120.00636 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5804 1.1972 -0.0072 5 6 4.2716 0.0001 -0.0125 6 6 5.7786 0.0002 -0.0198 7 1 6.1420 -1.0275 -0.0227 8 6 6.2947 0.7199 1.2278 9 6 6.2825 0.7229 -1.2707 10 7 7.7472 0.6289 -1.3339 11 6 8.1705 -0.7093 -1.7676 12 6 9.6602 -0.8480 -1.5867 13 1 10.2349 -0.0244 -1.1897 14 6 10.2894 -2.0262 -1.9291 15 7 9.5896 -3.0289 -2.4130 16 14 12.1360 -2.1979 -1.7055 17 1 12.6865 -0.9366 -1.1475 18 1 12.4195 -3.3171 -0.7715 19 1 12.7699 -2.4768 -3.0191 20 6 8.3040 1.6673 -2.2111 21 6 8.2820 3.0139 -1.4851 22 6 9.1995 2.9490 -0.2623 23 6 8.7710 4.1118 -2.4318 24 6 3.5805 -1.1971 -0.0115 25 6 2.1982 -1.1971 -0.0057 26 1 -0.3634 -0.0049 1.0277 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8875 -0.5181 29 1 1.6581 2.1324 0.0045 30 1 4.1205 2.1325 -0.0077 31 1 5.8585 0.2642 2.1168 32 1 7.3806 0.6365 1.2723 33 1 6.0126 1.7718 1.1832 34 1 5.8500 0.2592 -2.1572 35 1 5.9872 1.7712 -1.2282 36 1 7.6600 -1.4637 -1.1690 37 1 7.9177 -0.8474 -2.8189 38 1 10.0322 -3.8578 -2.6535 39 1 9.3311 1.4111 -2.4708 40 1 7.7055 1.7346 -3.1197 41 1 7.2646 3.2372 -1.1644 42 1 9.1836 3.9082 0.2552 43 1 8.8511 2.1667 0.4122 44 1 10.2170 2.7255 -0.5831 45 1 8.1174 4.1581 -3.3029 46 1 8.7558 5.0711 -1.9145 47 1 9.7885 3.8884 -2.7525 48 1 4.1205 -2.1324 -0.0152 49 1 1.6582 -2.1324 -0.0053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657582143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:18 Heat of formation + Delta-G solvation = -5.444485 kcal Electronic energy + Delta-G solvation = -23629.976598 eV Core-core repulsion = 20555.562214 eV Total energy + Delta-G solvation = -3074.414384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.52807 -37.65739 -35.09929 -33.63307 -32.26779 -30.93804 -30.65912 -27.28644 -26.71739 -26.45018 -25.90232 -23.77176 -22.75421 -21.94184 -20.72225 -19.63608 -18.81922 -16.47296 -16.11572 -15.29907 -15.06836 -14.86468 -14.49281 -14.14023 -13.96137 -13.83353 -13.42650 -13.32656 -13.16429 -13.02254 -12.32837 -12.31114 -12.17429 -12.02416 -11.78840 -11.74961 -11.57842 -11.33606 -11.18964 -10.98740 -10.90890 -10.65453 -10.62287 -10.48091 -10.31872 -10.24601 -10.08211 -9.91258 -9.50084 -9.10030 -8.76534 -8.40691 -8.28596 -7.14432 -6.00119 -4.00480 1.50242 1.56203 3.31676 3.39552 3.43923 3.90386 4.44341 4.79525 4.90461 4.94020 5.15045 5.24543 5.26407 5.35196 5.40178 5.47372 5.50227 5.54170 5.64840 5.68691 5.72988 5.79772 5.84712 5.94729 5.98992 6.06639 6.13617 6.19123 6.22094 6.28501 6.32025 6.36192 6.46260 6.50436 6.56339 6.59213 6.63071 6.64370 6.70005 6.83090 6.95327 6.99939 7.04490 7.19244 7.36038 7.42034 7.85667 8.15639 8.28051 8.60726 9.08339 9.63568 11.10782 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004364 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.214152 B = 6414.367194 C = 7774.044600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.112 4.112 5 C -0.067 4.067 6 C -0.049 4.049 7 H 0.083 0.917 8 C -0.126 4.126 9 C 0.067 3.933 10 N -0.530 5.530 11 C 0.192 3.808 12 C -0.502 4.502 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.067 3.933 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.113 4.113 25 C -0.120 4.120 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.059 0.941 36 H 0.031 0.969 37 H -0.013 1.013 38 H 0.259 0.741 39 H 0.085 0.915 40 H 0.015 0.985 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.122 0.878 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 9.440 4.560 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.067 4.067 6 C -0.068 4.068 7 H 0.102 0.898 8 C -0.183 4.183 9 C -0.062 4.062 10 N -0.253 5.253 11 C 0.067 3.933 12 C -0.541 4.541 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.062 4.062 21 C -0.109 4.109 22 C -0.190 4.190 23 C -0.203 4.203 24 C -0.131 4.131 25 C -0.138 4.138 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.140 0.860 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.872 9.328 4.962 16.653 hybrid contribution 0.632 -0.471 -0.860 1.166 sum -12.240 8.857 4.102 15.656 Atomic orbital electron populations 1.20742 0.91684 1.02395 1.01904 1.19834 0.95701 0.93365 1.01373 1.20956 0.94234 0.97173 1.01678 1.20991 0.93773 0.97887 1.00309 1.20080 0.96171 0.92855 0.97600 1.20169 0.88619 1.01747 0.96252 0.89838 1.21658 1.02577 0.98752 0.95332 1.22048 0.90282 0.98586 0.95281 1.62022 1.05757 1.06116 1.51451 1.19748 0.96132 0.83798 0.93595 1.21210 0.92356 0.99141 1.41363 0.91742 1.24974 0.98201 0.95913 0.95509 1.69965 1.35484 1.04201 1.44213 0.86516 0.85651 0.78098 0.77612 1.19664 1.21107 1.21243 1.22045 1.01168 0.90547 0.92417 1.21102 0.99067 0.94710 0.95993 1.21676 0.99325 1.00294 0.97715 1.21820 1.01237 0.98136 0.99132 1.21159 0.93985 0.98015 0.99941 1.20982 0.94218 0.97265 1.01362 0.91588 0.91885 0.91836 0.86611 0.86250 0.94102 0.90584 0.93640 0.95932 0.92272 0.95080 0.99514 0.93096 0.89654 0.96691 0.92328 0.94748 0.91031 0.93250 0.93410 0.93340 0.92752 0.85975 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.10 -1.22 5.88 -104.63 -0.62 -1.84 16 3 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 4 C -0.11 -1.50 8.81 -39.59 -0.35 -1.85 16 5 C -0.07 -1.00 4.78 -104.63 -0.50 -1.50 16 6 C -0.05 -0.81 2.62 -91.77 -0.24 -1.05 16 7 H 0.08 1.58 6.42 -51.93 -0.33 1.25 16 8 C -0.13 -1.94 8.74 37.16 0.32 -1.61 16 9 C 0.07 1.19 3.95 -3.82 -0.02 1.17 16 10 N -0.53 -10.79 3.29 -236.07 -0.78 -11.57 16 11 C 0.19 4.87 4.55 -4.97 -0.02 4.85 16 12 C -0.50 -13.70 8.23 -34.44 -0.28 -13.99 16 13 H 0.06 1.75 7.32 -52.49 -0.38 1.36 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.07 1.26 4.19 -3.83 -0.02 1.25 16 21 C -0.09 -1.39 2.96 -90.62 -0.27 -1.66 16 22 C -0.13 -2.09 9.07 37.16 0.34 -1.75 16 23 C -0.15 -1.95 9.19 37.16 0.34 -1.61 16 24 C -0.11 -1.64 9.67 -39.59 -0.38 -2.02 16 25 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.48 7.22 -52.48 -0.38 1.11 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.30 7.48 -51.93 -0.39 0.92 16 33 H 0.04 0.64 7.58 -51.93 -0.39 0.24 16 34 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 35 H 0.06 0.96 5.89 -51.93 -0.31 0.65 16 36 H 0.03 0.84 6.59 -51.93 -0.34 0.50 16 37 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 40 H 0.01 0.28 7.99 -51.93 -0.42 -0.13 16 41 H 0.06 0.88 6.70 -51.93 -0.35 0.53 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.23 7.30 -51.92 -0.38 0.85 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.12 1.73 7.95 -52.49 -0.42 1.31 16 49 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -28.74 383.68 -10.52 -39.26 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -9.04 Total: 0.38 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -2.19 Total: -24.57 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.04 Total: -37.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.74 -10.52 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657582143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.814 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds