Wall clock time and date at job start Tue Mar 31 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38237 * 120.00218 * 2 1 4 4 C 1.38227 * 120.00327 * 180.34630 * 3 2 1 5 5 C 1.38233 * 120.00139 * 359.90551 * 4 3 2 6 6 C 1.50700 * 119.99983 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47283 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47412 * 59.97863 * 6 5 4 9 9 C 1.53000 * 109.47182 * 299.97361 * 6 5 4 10 10 N 1.46904 * 109.47097 * 184.53411 * 9 6 5 11 11 C 1.46905 * 110.99431 * 75.97061 * 10 9 6 12 12 C 1.50701 * 109.46708 * 189.99934 * 11 10 9 13 13 H 1.07995 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99600 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00536 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99583 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47358 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46965 * 120.00108 * 16 14 12 19 19 H 1.48496 * 109.47139 * 239.99682 * 16 14 12 20 20 C 1.46901 * 111.00004 * 199.92033 * 10 9 6 21 21 C 1.52995 * 109.47068 * 76.16661 * 20 10 9 22 22 C 1.53008 * 109.47049 * 63.90081 * 21 20 10 23 23 C 1.52996 * 109.47628 * 183.89884 * 21 20 10 24 24 C 1.38230 * 119.99945 * 0.04531 * 5 4 3 25 25 C 1.38232 * 120.00170 * 0.02562 * 24 5 4 26 26 H 1.09003 * 109.47542 * 269.72493 * 1 2 3 27 27 H 1.09004 * 109.47432 * 29.73011 * 1 2 3 28 28 H 1.09004 * 109.47384 * 149.72567 * 1 2 3 29 29 H 1.08002 * 119.99523 * 0.27443 * 3 2 1 30 30 H 1.08003 * 120.00345 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47400 * 54.57221 * 8 6 5 32 32 H 1.09003 * 109.47385 * 174.57447 * 8 6 5 33 33 H 1.09002 * 109.47057 * 294.57281 * 8 6 5 34 34 H 1.08998 * 109.47270 * 304.54023 * 9 6 5 35 35 H 1.09000 * 109.46445 * 64.53928 * 9 6 5 36 36 H 1.09000 * 109.47402 * 309.99719 * 11 10 9 37 37 H 1.09003 * 109.47153 * 69.99944 * 11 10 9 38 38 H 0.96997 * 120.00433 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.46846 * 196.16982 * 20 10 9 40 40 H 1.09004 * 109.46848 * 316.17089 * 20 10 9 41 41 H 1.08998 * 109.47424 * 303.90431 * 21 20 10 42 42 H 1.09000 * 109.47355 * 180.02562 * 22 21 20 43 43 H 1.09010 * 109.46967 * 300.00022 * 22 21 20 44 44 H 1.08998 * 109.46749 * 59.99365 * 22 21 20 45 45 H 1.09006 * 109.46984 * 59.99766 * 23 21 20 46 46 H 1.08992 * 109.47987 * 180.02562 * 23 21 20 47 47 H 1.08998 * 109.46697 * 300.00958 * 23 21 20 48 48 H 1.08002 * 120.00393 * 180.02562 * 24 5 4 49 49 H 1.07999 * 120.00636 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5804 1.1972 -0.0072 5 6 4.2716 0.0001 -0.0125 6 6 5.7786 0.0002 -0.0198 7 1 6.1420 -1.0275 -0.0227 8 6 6.2947 0.7199 1.2278 9 6 6.2825 0.7229 -1.2707 10 7 7.7472 0.6289 -1.3339 11 6 8.1705 -0.7093 -1.7676 12 6 9.6602 -0.8480 -1.5867 13 1 10.2349 -0.0244 -1.1897 14 6 10.2894 -2.0262 -1.9291 15 7 9.5896 -3.0289 -2.4130 16 14 12.1360 -2.1979 -1.7055 17 1 12.6865 -0.9366 -1.1475 18 1 12.4195 -3.3171 -0.7715 19 1 12.7699 -2.4768 -3.0191 20 6 8.3040 1.6673 -2.2111 21 6 8.2820 3.0139 -1.4851 22 6 9.1995 2.9490 -0.2623 23 6 8.7710 4.1118 -2.4318 24 6 3.5805 -1.1971 -0.0115 25 6 2.1982 -1.1971 -0.0057 26 1 -0.3634 -0.0049 1.0277 27 1 -0.3634 0.8924 -0.5096 28 1 -0.3634 -0.8875 -0.5181 29 1 1.6581 2.1324 0.0045 30 1 4.1205 2.1325 -0.0077 31 1 5.8585 0.2642 2.1168 32 1 7.3806 0.6365 1.2723 33 1 6.0126 1.7718 1.1832 34 1 5.8500 0.2592 -2.1572 35 1 5.9872 1.7712 -1.2282 36 1 7.6600 -1.4637 -1.1690 37 1 7.9177 -0.8474 -2.8189 38 1 10.0322 -3.8578 -2.6535 39 1 9.3311 1.4111 -2.4708 40 1 7.7055 1.7346 -3.1197 41 1 7.2646 3.2372 -1.1644 42 1 9.1836 3.9082 0.2552 43 1 8.8511 2.1667 0.4122 44 1 10.2170 2.7255 -0.5831 45 1 8.1174 4.1581 -3.3029 46 1 8.7558 5.0711 -1.9145 47 1 9.7885 3.8884 -2.7525 48 1 4.1205 -2.1324 -0.0152 49 1 1.6582 -2.1324 -0.0053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657582143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:18 Heat of formation + Delta-G solvation = -18.123094 kcal Electronic energy + Delta-G solvation = -23630.526383 eV Core-core repulsion = 20555.562214 eV Total energy + Delta-G solvation = -3074.964169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64214 -39.14932 -36.31948 -35.33804 -34.04421 -32.06833 -31.69893 -29.27112 -27.88071 -27.48183 -27.30111 -25.58545 -23.83717 -23.30208 -22.14491 -20.88849 -20.27352 -18.53291 -17.36917 -16.74792 -16.47232 -16.16950 -15.86964 -15.59282 -15.46820 -14.95706 -14.66708 -14.48336 -14.29757 -14.16561 -14.13121 -13.65979 -13.56440 -13.24042 -13.01508 -12.95706 -12.85222 -12.67956 -12.63192 -12.58978 -12.47843 -12.15143 -12.03371 -11.93640 -11.69715 -11.55964 -11.55223 -11.44038 -11.14915 -10.99746 -10.58495 -9.78803 -9.32830 -8.91314 -8.18409 -6.26948 0.47126 0.53805 1.39380 1.40315 1.53502 2.40508 2.86616 3.14109 3.29364 3.82612 3.93761 4.06718 4.12722 4.15951 4.20424 4.22712 4.35323 4.47240 4.52242 4.53597 4.64058 4.67537 4.77934 4.86945 4.87742 4.90148 4.91875 4.95703 5.00956 5.04102 5.12895 5.15422 5.18749 5.21934 5.26447 5.30744 5.34169 5.35311 5.39340 5.45804 5.59250 5.62125 5.69881 5.73610 5.74627 5.85217 6.10912 6.18274 6.42760 6.70158 6.90815 7.42312 8.93075 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004364 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.214152 B = 6414.367194 C = 7774.044600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.086 4.086 6 C -0.042 4.042 7 H 0.045 0.955 8 C -0.116 4.116 9 C 0.073 3.927 10 N -0.524 5.524 11 C 0.211 3.789 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.937 5.937 16 Si 0.964 3.036 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.066 3.934 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.001 0.999 35 H 0.086 0.914 36 H 0.005 0.995 37 H -0.050 1.050 38 H 0.262 0.738 39 H 0.057 0.943 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.034 0.966 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.109 0.891 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 12.050 5.419 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.086 4.086 6 C -0.061 4.061 7 H 0.064 0.936 8 C -0.173 4.173 9 C -0.055 4.055 10 N -0.248 5.248 11 C 0.084 3.916 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.578 5.578 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.062 4.062 21 C -0.100 4.100 22 C -0.186 4.186 23 C -0.199 4.199 24 C -0.153 4.153 25 C -0.145 4.145 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.019 0.981 35 H 0.104 0.896 36 H 0.023 0.977 37 H -0.033 1.033 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.127 0.873 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.990 11.960 5.827 19.306 hybrid contribution 0.872 -1.286 -1.144 1.930 sum -13.118 10.673 4.683 17.548 Atomic orbital electron populations 1.20804 0.89145 1.03539 1.03068 1.20268 0.97594 0.92815 0.99537 1.21315 0.93751 0.98531 1.00441 1.21144 0.94662 0.97434 1.00092 1.19936 0.94833 0.93993 0.99865 1.19995 0.90357 0.99456 0.96252 0.93630 1.21554 1.00979 0.99874 0.94911 1.22091 0.88279 1.00054 0.95126 1.62006 1.07608 1.03980 1.51174 1.19356 0.95368 0.86099 0.90744 1.21476 0.93238 0.99223 1.41010 0.91694 1.25874 1.03198 0.95521 0.95094 1.70101 1.37599 1.04812 1.45256 0.85414 0.79612 0.78397 0.77707 1.18561 1.20588 1.20668 1.22102 0.99233 0.92064 0.92793 1.21047 0.99994 0.92910 0.96034 1.21630 0.98330 1.01166 0.97516 1.21781 1.00867 0.98174 0.99030 1.21222 0.95179 0.97578 1.01352 1.21220 0.93425 0.98795 1.01055 0.90265 0.90435 0.91097 0.83721 0.84973 0.93304 0.92805 0.91533 0.98108 0.89589 0.97743 1.03279 0.92919 0.92452 0.96979 0.90994 0.91855 0.92952 0.94643 0.92762 0.90873 0.93374 0.87329 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.23 0.71 -0.85 16 2 C -0.10 -2.20 5.88 -19.87 -0.12 -2.31 16 3 C -0.12 -2.64 9.70 22.27 0.22 -2.42 16 4 C -0.12 -2.91 8.81 22.27 0.20 -2.72 16 5 C -0.09 -2.61 4.78 -19.87 -0.09 -2.70 16 6 C -0.04 -1.45 2.62 -11.54 -0.03 -1.48 16 7 H 0.05 1.90 6.42 -2.39 -0.02 1.89 16 8 C -0.12 -3.58 8.74 71.98 0.63 -2.95 16 9 C 0.07 2.68 3.95 86.30 0.34 3.02 16 10 N -0.52 -22.33 3.29 -900.77 -2.96 -25.30 16 11 C 0.21 11.42 4.55 85.56 0.39 11.81 16 12 C -0.51 -29.09 8.23 25.60 0.21 -28.88 16 13 H 0.06 3.62 7.32 -2.91 -0.02 3.60 16 14 C 0.00 0.04 5.46 84.66 0.46 0.50 16 15 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 16 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C 0.07 2.57 4.19 86.30 0.36 2.93 16 21 C -0.08 -2.39 2.96 -10.79 -0.03 -2.42 16 22 C -0.13 -3.88 9.07 71.98 0.65 -3.22 16 23 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 24 C -0.14 -4.07 9.67 22.27 0.22 -3.86 16 25 C -0.13 -3.15 9.70 22.27 0.22 -2.94 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.13 2.92 7.22 -2.91 -0.02 2.90 16 31 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.05 1.89 7.48 -2.39 -0.02 1.87 16 33 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 34 H 0.00 0.03 8.00 -2.39 -0.02 0.01 16 35 H 0.09 2.70 5.89 -2.39 -0.01 2.68 16 36 H 0.00 0.27 6.59 -2.39 -0.02 0.25 16 37 H -0.05 -3.05 8.12 -2.39 -0.02 -3.07 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.06 2.53 6.58 -2.39 -0.02 2.52 16 40 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 41 H 0.07 1.96 6.70 -2.39 -0.02 1.94 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.77 7.30 -2.38 -0.02 1.75 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.11 3.41 7.95 -2.91 -0.02 3.39 16 49 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -65.26 383.68 5.21 -60.05 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.88 Total: 16.69 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 4.99 Total: -41.26 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.68 Total: -82.49 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.26 5.21 -60.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657582143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.927 kcal (2) G-P(sol) polarization free energy of solvation -65.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds