Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47371 * 2 1 4 4 C 1.50701 * 109.47073 * 119.99788 * 2 1 3 5 5 C 1.38258 * 120.00111 * 299.97823 * 4 2 1 6 6 C 1.38213 * 119.99860 * 179.76912 * 5 4 2 7 7 C 1.38254 * 120.00247 * 0.52658 * 6 5 4 8 8 C 1.50699 * 120.00070 * 179.74508 * 7 6 5 9 9 N 1.46906 * 109.46990 * 259.72881 * 8 7 6 10 10 C 1.46902 * 110.99573 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47515 * 325.00070 * 10 9 8 12 12 C 1.52999 * 109.47197 * 85.00442 * 10 9 8 13 13 C 1.50699 * 109.46726 * 204.99752 * 10 9 8 14 14 H 1.08006 * 120.00161 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99813 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00087 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99843 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47434 * 119.99828 * 17 15 13 20 20 H 1.48499 * 109.47073 * 239.99773 * 17 15 13 21 21 C 1.38213 * 119.99736 * 359.47753 * 7 6 5 22 22 C 1.50697 * 119.99824 * 180.27656 * 21 7 6 23 23 C 1.53001 * 109.47388 * 119.99446 * 22 21 7 24 24 C 1.53004 * 109.46922 * 239.99451 * 22 21 7 25 25 C 1.38220 * 120.00365 * 120.00104 * 4 2 1 26 26 H 1.09005 * 109.47044 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47161 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47621 * 239.99816 * 2 1 3 30 30 H 1.08998 * 109.47315 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46854 * 300.00035 * 3 2 1 32 32 H 1.08997 * 109.46898 * 59.99373 * 3 2 1 33 33 H 1.07995 * 120.00142 * 0.02562 * 5 4 2 34 34 H 1.08007 * 120.00138 * 180.27555 * 6 5 4 35 35 H 1.09002 * 109.47064 * 139.73158 * 8 7 6 36 36 H 1.09000 * 109.47099 * 19.72884 * 8 7 6 37 37 H 1.00896 * 111.00309 * 56.04484 * 9 8 7 38 38 H 1.09011 * 109.46887 * 299.99666 * 12 10 9 39 39 H 1.08999 * 109.47708 * 59.99506 * 12 10 9 40 40 H 1.09000 * 109.47499 * 180.02562 * 12 10 9 41 41 H 0.97004 * 120.00261 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.47546 * 359.97438 * 22 21 7 43 43 H 1.08998 * 109.47051 * 60.00052 * 23 22 21 44 44 H 1.09000 * 109.47260 * 179.97438 * 23 22 21 45 45 H 1.08993 * 109.47324 * 300.00012 * 23 22 21 46 46 H 1.09001 * 109.47312 * 60.00270 * 24 22 21 47 47 H 1.09000 * 109.47174 * 179.97438 * 24 22 21 48 48 H 1.08998 * 109.47296 * 299.99812 * 24 22 21 49 49 H 1.08005 * 119.99206 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6987 -0.2377 2.4862 6 6 2.1554 -0.8920 3.6147 7 6 2.9549 -2.0128 3.4880 8 6 3.4577 -2.7228 4.7184 9 7 4.8481 -2.3263 4.9789 10 6 5.3728 -3.0010 6.1736 11 1 4.5747 -3.1136 6.9074 12 6 5.9081 -4.3810 5.7864 13 6 6.4876 -2.1781 6.7662 14 1 6.7770 -1.2468 6.3019 15 6 7.1381 -2.6140 7.9011 16 7 6.7854 -3.7476 8.4666 17 14 8.5194 -1.5936 8.6360 18 1 8.7209 -0.3708 7.8178 19 1 8.1643 -1.2072 10.0252 20 1 9.7716 -2.3918 8.6490 21 6 3.2885 -2.4853 2.2326 22 6 4.1549 -3.7106 2.0945 23 6 3.3897 -4.7927 1.3300 24 6 5.4297 -3.3501 1.3290 25 6 2.8270 -1.8342 1.1038 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.0777 0.6403 2.5853 34 1 1.8912 -0.5254 4.5957 35 1 3.4106 -3.8004 4.5609 36 1 2.8368 -2.4531 5.5728 37 1 4.9283 -1.3242 5.0644 38 1 5.1017 -4.9763 5.3577 39 1 6.7062 -4.2684 5.0526 40 1 6.2971 -4.8818 6.6730 41 1 7.2427 -4.0542 9.2653 42 1 4.4188 -4.0826 3.0845 43 1 3.1261 -4.4206 0.3400 44 1 4.0165 -5.6788 1.2296 45 1 2.4816 -5.0495 1.8752 46 1 5.9749 -2.5792 1.8736 47 1 6.0565 -4.2362 1.2294 48 1 5.1661 -2.9780 0.3390 49 1 3.0875 -2.2034 0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659216561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = -10.730988 kcal Electronic energy + Delta-G solvation = -23622.058360 eV Core-core repulsion = 20547.414737 eV Total energy + Delta-G solvation = -3074.643624 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88214 -36.74776 -35.48273 -34.29722 -32.60231 -30.46674 -29.56771 -27.78428 -27.25874 -26.84777 -25.36720 -24.34554 -23.31124 -21.66610 -20.57132 -19.73841 -18.70037 -16.83172 -16.17734 -15.48034 -14.97356 -14.60223 -14.48103 -13.93512 -13.85438 -13.81638 -13.48001 -13.28999 -13.16690 -12.94473 -12.74274 -12.41777 -12.10279 -12.04442 -11.82606 -11.70376 -11.61416 -11.24204 -11.10983 -11.02594 -10.88798 -10.81348 -10.74639 -10.70894 -10.32406 -10.23965 -10.19465 -10.06799 -9.74204 -8.82536 -8.49883 -8.46095 -8.14966 -7.23747 -6.02197 -4.08262 1.61771 1.67962 3.28791 3.36801 3.41226 3.97008 4.41355 4.64102 4.75388 5.00630 5.10436 5.12257 5.22881 5.29277 5.29929 5.42852 5.48320 5.49701 5.55012 5.57111 5.69116 5.69873 5.75311 5.85221 5.87179 5.88494 6.05805 6.06583 6.10717 6.12224 6.14458 6.19096 6.29394 6.41344 6.43583 6.59320 6.64326 6.80083 6.83377 6.89431 7.10822 7.15600 7.24214 7.30482 7.51760 7.79299 7.90923 8.28323 8.40537 8.68182 9.02830 9.57759 11.04076 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019492 B = 0.003811 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.131924 B = 7346.074388 C = 8010.232129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.072 4.072 8 C 0.095 3.905 9 N -0.678 5.678 10 C 0.211 3.789 11 H 0.000 1.000 12 C -0.123 4.123 13 C -0.515 4.515 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.046 4.046 22 C -0.063 4.063 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.331 0.669 38 H 0.003 0.997 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.260 0.740 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.044 0.956 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 4.165 -16.225 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.141 4.141 6 C -0.131 4.131 7 C -0.072 4.072 8 C -0.034 4.034 9 N -0.309 5.309 10 C 0.104 3.896 11 H 0.017 0.983 12 C -0.181 4.181 13 C -0.554 4.554 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.047 4.047 22 C -0.081 4.081 23 C -0.200 4.200 24 C -0.191 4.191 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.148 0.852 38 H 0.022 0.978 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.624 3.571 -16.486 19.935 hybrid contribution 0.285 1.006 1.246 1.626 sum -10.338 4.577 -15.240 18.976 Atomic orbital electron populations 1.21846 0.94684 1.01850 1.01600 1.20070 0.95637 0.95922 0.95606 1.21849 1.01370 0.95260 1.01575 1.19699 0.98546 0.96023 0.94292 1.20786 1.01304 1.00034 0.91968 1.21036 0.98235 0.95549 0.98324 1.19921 0.96680 0.95687 0.94949 1.20893 0.91192 0.99096 0.92237 1.60783 1.14964 1.12056 1.43089 1.19121 0.93776 0.92153 0.84577 0.98251 1.21708 0.97810 0.97654 1.00942 1.21297 1.17738 1.06557 1.09810 0.92207 1.24912 0.97224 0.95127 0.96747 1.69905 1.41718 1.20591 1.20697 0.86488 0.82002 0.80329 0.78857 1.19764 1.21138 1.21000 1.19652 0.96480 0.96487 0.92050 1.20221 0.93900 0.92247 1.01768 1.21863 1.00042 0.98307 0.99741 1.21731 0.96753 1.01672 0.98981 1.20800 0.98875 0.95798 0.98025 0.92519 0.92747 0.92642 0.90878 0.92481 0.92765 0.92500 0.86865 0.86547 0.90870 0.95729 0.85184 0.97820 0.94939 0.90178 0.93022 0.88237 0.93155 0.92647 0.93006 0.91725 0.92932 0.93730 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.01 37.16 0.33 -0.90 16 2 C -0.05 -0.53 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.31 9.01 37.16 0.33 -0.97 16 4 C -0.09 -1.06 4.78 -104.62 -0.50 -1.56 16 5 C -0.12 -1.59 8.71 -39.58 -0.34 -1.93 16 6 C -0.11 -1.65 9.67 -39.58 -0.38 -2.04 16 7 C -0.07 -1.16 5.39 -104.63 -0.56 -1.72 16 8 C 0.09 1.74 4.73 -4.97 -0.02 1.71 16 9 N -0.68 -14.30 6.14 -109.22 -0.67 -14.97 16 10 C 0.21 5.29 2.60 -68.86 -0.18 5.11 16 11 H 0.00 0.00 7.80 -51.93 -0.41 -0.41 16 12 C -0.12 -3.02 9.19 37.16 0.34 -2.68 16 13 C -0.52 -14.09 8.59 -34.44 -0.30 -14.38 16 14 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.05 -0.69 4.78 -104.63 -0.50 -1.19 16 22 C -0.06 -0.92 2.89 -91.77 -0.26 -1.19 16 23 C -0.14 -1.75 9.01 37.16 0.33 -1.41 16 24 C -0.13 -1.88 9.01 37.16 0.33 -1.54 16 25 C -0.12 -1.56 8.34 -39.58 -0.33 -1.89 16 26 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 33 H 0.11 1.26 7.10 -52.49 -0.37 0.88 16 34 H 0.12 1.61 8.04 -52.48 -0.42 1.19 16 35 H 0.07 1.36 5.99 -51.93 -0.31 1.05 16 36 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 37 H 0.33 7.06 8.22 -39.29 -0.32 6.74 16 38 H 0.00 0.06 7.45 -51.92 -0.39 -0.32 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.10 1.71 5.58 -51.93 -0.29 1.42 16 43 H 0.05 0.56 7.39 -51.93 -0.38 0.17 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.04 0.55 7.39 -51.93 -0.38 0.16 16 49 H 0.11 1.35 6.99 -52.48 -0.37 0.99 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -27.86 380.20 -10.31 -38.17 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.89 Total: 5.34 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -2.08 Total: -25.79 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.04 Total: -39.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.86 -10.31 -38.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659216561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.437 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds