Wall clock time and date at job start Tue Mar 31 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47371 * 2 1 4 4 C 1.50701 * 109.47073 * 119.99788 * 2 1 3 5 5 C 1.38258 * 120.00111 * 299.97823 * 4 2 1 6 6 C 1.38213 * 119.99860 * 179.76912 * 5 4 2 7 7 C 1.38254 * 120.00247 * 0.52658 * 6 5 4 8 8 C 1.50699 * 120.00070 * 179.74508 * 7 6 5 9 9 N 1.46906 * 109.46990 * 259.72881 * 8 7 6 10 10 C 1.46902 * 110.99573 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47515 * 325.00070 * 10 9 8 12 12 C 1.52999 * 109.47197 * 85.00442 * 10 9 8 13 13 C 1.50699 * 109.46726 * 204.99752 * 10 9 8 14 14 H 1.08006 * 120.00161 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99813 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00087 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99843 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47217 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47434 * 119.99828 * 17 15 13 20 20 H 1.48499 * 109.47073 * 239.99773 * 17 15 13 21 21 C 1.38213 * 119.99736 * 359.47753 * 7 6 5 22 22 C 1.50697 * 119.99824 * 180.27656 * 21 7 6 23 23 C 1.53001 * 109.47388 * 119.99446 * 22 21 7 24 24 C 1.53004 * 109.46922 * 239.99451 * 22 21 7 25 25 C 1.38220 * 120.00365 * 120.00104 * 4 2 1 26 26 H 1.09005 * 109.47044 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47161 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47621 * 239.99816 * 2 1 3 30 30 H 1.08998 * 109.47315 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46854 * 300.00035 * 3 2 1 32 32 H 1.08997 * 109.46898 * 59.99373 * 3 2 1 33 33 H 1.07995 * 120.00142 * 0.02562 * 5 4 2 34 34 H 1.08007 * 120.00138 * 180.27555 * 6 5 4 35 35 H 1.09002 * 109.47064 * 139.73158 * 8 7 6 36 36 H 1.09000 * 109.47099 * 19.72884 * 8 7 6 37 37 H 1.00896 * 111.00309 * 56.04484 * 9 8 7 38 38 H 1.09011 * 109.46887 * 299.99666 * 12 10 9 39 39 H 1.08999 * 109.47708 * 59.99506 * 12 10 9 40 40 H 1.09000 * 109.47499 * 180.02562 * 12 10 9 41 41 H 0.97004 * 120.00261 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.47546 * 359.97438 * 22 21 7 43 43 H 1.08998 * 109.47051 * 60.00052 * 23 22 21 44 44 H 1.09000 * 109.47260 * 179.97438 * 23 22 21 45 45 H 1.08993 * 109.47324 * 300.00012 * 23 22 21 46 46 H 1.09001 * 109.47312 * 60.00270 * 24 22 21 47 47 H 1.09000 * 109.47174 * 179.97438 * 24 22 21 48 48 H 1.08998 * 109.47296 * 299.99812 * 24 22 21 49 49 H 1.08005 * 119.99206 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6987 -0.2377 2.4862 6 6 2.1554 -0.8920 3.6147 7 6 2.9549 -2.0128 3.4880 8 6 3.4577 -2.7228 4.7184 9 7 4.8481 -2.3263 4.9789 10 6 5.3728 -3.0010 6.1736 11 1 4.5747 -3.1136 6.9074 12 6 5.9081 -4.3810 5.7864 13 6 6.4876 -2.1781 6.7662 14 1 6.7770 -1.2468 6.3019 15 6 7.1381 -2.6140 7.9011 16 7 6.7854 -3.7476 8.4666 17 14 8.5194 -1.5936 8.6360 18 1 8.7209 -0.3708 7.8178 19 1 8.1643 -1.2072 10.0252 20 1 9.7716 -2.3918 8.6490 21 6 3.2885 -2.4853 2.2326 22 6 4.1549 -3.7106 2.0945 23 6 3.3897 -4.7927 1.3300 24 6 5.4297 -3.3501 1.3290 25 6 2.8270 -1.8342 1.1038 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.0777 0.6403 2.5853 34 1 1.8912 -0.5254 4.5957 35 1 3.4106 -3.8004 4.5609 36 1 2.8368 -2.4531 5.5728 37 1 4.9283 -1.3242 5.0644 38 1 5.1017 -4.9763 5.3577 39 1 6.7062 -4.2684 5.0526 40 1 6.2971 -4.8818 6.6730 41 1 7.2427 -4.0542 9.2653 42 1 4.4188 -4.0826 3.0845 43 1 3.1261 -4.4206 0.3400 44 1 4.0165 -5.6788 1.2296 45 1 2.4816 -5.0495 1.8752 46 1 5.9749 -2.5792 1.8736 47 1 6.0565 -4.2362 1.2294 48 1 5.1661 -2.9780 0.3390 49 1 3.0875 -2.2034 0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659216561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:53 Heat of formation + Delta-G solvation = -23.459273 kcal Electronic energy + Delta-G solvation = -23622.610300 eV Core-core repulsion = 20547.414737 eV Total energy + Delta-G solvation = -3075.195563 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98518 -38.03740 -36.95489 -35.43268 -34.40878 -31.93883 -30.71894 -29.37845 -27.93044 -27.89507 -27.38833 -25.82376 -24.40563 -22.78310 -21.70967 -21.63059 -19.72526 -18.65511 -17.50153 -16.83104 -16.62708 -15.92486 -15.58433 -15.44048 -15.29173 -14.82153 -14.59600 -14.50758 -14.28945 -14.24246 -13.98859 -13.55702 -13.44985 -13.19392 -12.99536 -12.98513 -12.80455 -12.76611 -12.57353 -12.52136 -12.23282 -12.21185 -12.02530 -11.94753 -11.87619 -11.78380 -11.64992 -11.30131 -11.04280 -10.88701 -10.58655 -9.57733 -9.29500 -9.02391 -8.13949 -6.27928 0.50354 0.59110 1.39891 1.41806 1.53623 2.40634 2.86452 3.14692 3.71125 3.79747 3.83895 3.98108 4.09254 4.22484 4.27171 4.38044 4.40455 4.45010 4.55253 4.63066 4.67387 4.72884 4.78756 4.85824 4.86196 4.86717 5.00922 5.01358 5.04270 5.04419 5.07603 5.16515 5.21743 5.23047 5.28714 5.33250 5.39674 5.44361 5.46459 5.48553 5.51734 5.66204 5.67736 5.82282 5.85926 5.96963 6.21446 6.22630 6.46625 6.75850 6.98248 7.42455 8.91768 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019492 B = 0.003811 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.131924 B = 7346.074388 C = 8010.232129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.078 4.078 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.096 4.096 8 C 0.104 3.896 9 N -0.669 5.669 10 C 0.217 3.783 11 H -0.033 1.033 12 C -0.108 4.108 13 C -0.534 4.534 14 H 0.057 0.943 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.052 4.052 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.015 0.985 37 H 0.329 0.671 38 H 0.019 0.981 39 H 0.028 0.972 40 H 0.056 0.944 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.038 0.962 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 5.412 -18.462 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.078 4.078 5 C -0.141 4.141 6 C -0.140 4.140 7 C -0.097 4.097 8 C -0.025 4.025 9 N -0.300 5.300 10 C 0.108 3.892 11 H -0.016 1.016 12 C -0.166 4.166 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.053 4.053 22 C -0.082 4.082 23 C -0.193 4.193 24 C -0.186 4.186 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.146 0.854 38 H 0.038 0.962 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.175 4.821 -18.736 22.342 hybrid contribution 0.381 0.632 1.887 2.026 sum -10.794 5.453 -16.849 20.740 Atomic orbital electron populations 1.21832 0.93600 1.01876 1.02471 1.20140 0.96455 0.96069 0.94455 1.21843 1.00759 0.94881 1.02471 1.20077 0.97127 0.95378 0.95248 1.21009 1.01136 1.00384 0.91596 1.21143 0.98270 0.95345 0.99264 1.19745 0.98721 0.96927 0.94295 1.20778 0.89331 0.99027 0.93327 1.60695 1.17096 1.11525 1.40647 1.18920 0.92489 0.92604 0.85146 1.01585 1.21495 0.98027 0.97489 0.99619 1.21587 1.18504 1.06799 1.10390 0.92495 1.25714 0.99524 0.96191 0.97114 1.70028 1.42761 1.21883 1.21035 0.85453 0.78934 0.78866 0.78037 1.19190 1.20602 1.20524 1.19745 0.96636 0.96740 0.92178 1.20170 0.94539 0.92941 1.00581 1.21808 0.99607 0.97775 1.00131 1.21680 0.96256 1.01144 0.99528 1.21010 0.98741 0.95929 0.98155 0.92604 0.91003 0.93052 0.89882 0.93437 0.90930 0.92633 0.84837 0.86476 0.91578 0.96689 0.85441 0.96168 0.95319 0.92565 0.92846 0.91421 0.91370 0.91931 0.93404 0.94291 0.92401 0.91621 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.01 71.98 0.65 -1.33 16 2 C -0.05 -0.87 3.09 -11.54 -0.04 -0.90 16 3 C -0.14 -2.17 9.01 71.98 0.65 -1.52 16 4 C -0.08 -1.75 4.78 -19.86 -0.09 -1.85 16 5 C -0.12 -2.98 8.71 22.27 0.19 -2.79 16 6 C -0.12 -3.53 9.67 22.27 0.22 -3.32 16 7 C -0.10 -3.14 5.39 -19.87 -0.11 -3.25 16 8 C 0.10 3.98 4.73 85.56 0.40 4.39 16 9 N -0.67 -29.32 6.14 -499.45 -3.07 -32.39 16 10 C 0.22 11.29 2.60 44.17 0.11 11.41 16 11 H -0.03 -1.93 7.80 -2.39 -0.02 -1.95 16 12 C -0.11 -5.48 9.19 71.98 0.66 -4.82 16 13 C -0.53 -29.89 8.59 25.60 0.22 -29.67 16 14 H 0.06 3.15 7.62 -2.91 -0.02 3.12 16 15 C 0.01 0.77 5.30 84.66 0.45 1.22 16 16 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 17 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.05 -1.54 4.78 -19.87 -0.09 -1.63 16 22 C -0.06 -1.84 2.89 -11.54 -0.03 -1.88 16 23 C -0.14 -3.14 9.01 71.98 0.65 -2.50 16 24 C -0.13 -3.50 9.01 71.98 0.65 -2.85 16 25 C -0.12 -2.95 8.34 22.27 0.19 -2.77 16 26 H 0.05 0.80 7.39 -2.38 -0.02 0.78 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.23 7.88 -2.39 -0.02 1.21 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 33 H 0.13 2.64 7.10 -2.91 -0.02 2.62 16 34 H 0.12 3.28 8.04 -2.91 -0.02 3.25 16 35 H 0.07 2.58 5.99 -2.39 -0.01 2.57 16 36 H 0.01 0.59 7.91 -2.39 -0.02 0.57 16 37 H 0.33 14.53 8.22 -89.70 -0.74 13.79 16 38 H 0.02 0.91 7.45 -2.38 -0.02 0.89 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.07 2.38 5.58 -2.38 -0.01 2.37 16 43 H 0.07 1.32 7.39 -2.39 -0.02 1.31 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.06 1.48 7.39 -2.39 -0.02 1.46 16 49 H 0.13 2.72 6.99 -2.91 -0.02 2.70 16 Total: -1.00 -60.54 380.20 4.04 -56.50 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.17 Total: 27.08 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 4.67 Total: -44.05 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.83 Total: -85.62 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.54 4.04 -56.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659216561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.045 kcal (2) G-P(sol) polarization free energy of solvation -60.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds