Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46998 * 2 1 4 4 C 1.50691 * 109.47206 * 120.00363 * 2 1 3 5 5 C 1.38253 * 120.00087 * 300.00245 * 4 2 1 6 6 C 1.38216 * 120.00148 * 180.02562 * 5 4 2 7 7 C 1.38256 * 119.99983 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00062 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.46980 * 260.02479 * 8 7 6 10 10 C 1.46900 * 110.99767 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47396 * 34.99891 * 10 9 8 12 12 C 1.53004 * 109.47335 * 275.00210 * 10 9 8 13 13 C 1.50702 * 109.47146 * 154.99890 * 10 9 8 14 14 H 1.07995 * 119.99716 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99661 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00479 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99455 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47115 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.46729 * 209.99943 * 17 15 13 20 20 H 1.48497 * 109.46994 * 329.99591 * 17 15 13 21 21 C 1.38212 * 120.00070 * 0.02562 * 7 6 5 22 22 C 1.50697 * 120.00100 * 179.97438 * 21 7 6 23 23 C 1.52997 * 109.47466 * 119.99935 * 22 21 7 24 24 C 1.52999 * 109.46961 * 240.00286 * 22 21 7 25 25 C 1.38220 * 120.00002 * 120.27474 * 4 2 1 26 26 H 1.08999 * 109.47450 * 59.99654 * 1 2 3 27 27 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47214 * 299.99839 * 1 2 3 29 29 H 1.09005 * 109.46874 * 240.00235 * 2 1 3 30 30 H 1.09001 * 109.47066 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47563 * 299.99957 * 3 2 1 32 32 H 1.09005 * 109.47116 * 60.00383 * 3 2 1 33 33 H 1.07994 * 120.00193 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99960 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46978 * 20.02448 * 8 7 6 36 36 H 1.09004 * 109.47003 * 140.02012 * 8 7 6 37 37 H 1.00894 * 110.99876 * 303.94533 * 9 8 7 38 38 H 1.09004 * 109.46618 * 300.00157 * 12 10 9 39 39 H 1.08995 * 109.47318 * 59.99710 * 12 10 9 40 40 H 1.08994 * 109.47068 * 180.02562 * 12 10 9 41 41 H 0.96998 * 120.00099 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47120 * 359.97438 * 22 21 7 43 43 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 44 44 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 45 45 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.46716 * 299.99650 * 24 22 21 47 47 H 1.09000 * 109.47486 * 59.99568 * 24 22 21 48 48 H 1.09001 * 109.47362 * 180.02562 * 24 22 21 49 49 H 1.07991 * 120.00149 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 1.6983 -0.2382 2.4861 6 6 2.1595 -0.8895 3.6145 7 6 2.9544 -2.0136 3.4876 8 6 3.4577 -2.7234 4.7180 9 7 4.8479 -2.3263 4.9781 10 6 5.3728 -2.9998 6.1735 11 1 4.9549 -4.0045 6.2376 12 6 4.9814 -2.2042 7.4204 13 6 6.8747 -3.0853 6.0831 14 1 7.3878 -2.6803 5.2235 15 6 7.5935 -3.6816 7.0975 16 7 6.9686 -4.1752 8.1440 17 14 9.4552 -3.7869 6.9857 18 1 10.0574 -2.5791 7.6053 19 1 9.9263 -4.9986 7.7034 20 1 9.8618 -3.8668 5.5597 21 6 3.2883 -2.4857 2.2323 22 6 4.1552 -3.7105 2.0939 23 6 3.3907 -4.7928 1.3291 24 6 5.4300 -3.3493 1.3288 25 6 2.8317 -1.8309 1.1034 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.0777 0.6400 2.5853 34 1 1.8989 -0.5204 4.5955 35 1 2.8369 -2.4538 5.5725 36 1 3.4109 -3.8010 4.5605 37 1 5.4317 -2.5070 4.1753 38 1 5.3993 -1.1995 7.3564 39 1 3.8951 -2.1424 7.4858 40 1 5.3712 -2.7037 8.3073 41 1 7.4743 -4.5943 8.8578 42 1 4.4192 -4.0825 3.0839 43 1 3.1270 -4.4206 0.3391 44 1 2.4826 -5.0501 1.8743 45 1 4.0179 -5.6786 1.2287 46 1 5.1663 -2.9771 0.3388 47 1 5.9747 -2.5783 1.8737 48 1 6.0569 -4.2353 1.2283 49 1 3.0959 -2.1975 0.1226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659216562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -10.897671 kcal Electronic energy + Delta-G solvation = -23626.324614 eV Core-core repulsion = 20551.673763 eV Total energy + Delta-G solvation = -3074.650852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.93607 -36.84109 -35.44361 -34.35243 -32.61341 -30.47297 -29.60282 -27.79715 -27.25777 -26.97659 -25.35064 -24.36403 -23.31721 -21.71895 -20.61929 -19.74659 -18.78770 -16.70918 -16.34763 -15.55244 -14.83934 -14.62707 -14.56396 -14.05154 -13.86738 -13.63687 -13.53926 -13.41992 -13.32456 -13.06982 -12.66330 -12.41962 -12.15299 -12.01461 -11.83668 -11.75464 -11.58978 -11.25577 -11.19943 -11.01283 -10.91236 -10.88389 -10.75832 -10.69316 -10.42903 -10.32841 -10.12376 -10.11896 -9.82492 -8.82665 -8.49201 -8.47047 -8.18340 -7.22587 -6.01997 -4.08315 1.60484 1.67370 3.30151 3.36499 3.39488 3.95813 4.41216 4.62525 4.74421 4.91458 5.05584 5.10267 5.23651 5.25321 5.29320 5.37864 5.39770 5.48687 5.50208 5.57949 5.64247 5.70113 5.73145 5.76992 5.81544 5.85955 5.96203 6.01537 6.06489 6.06900 6.12238 6.18822 6.23586 6.34174 6.39977 6.45983 6.48858 6.78927 6.82162 6.89123 7.06368 7.15612 7.24645 7.29108 7.51601 7.78886 7.91003 8.28751 8.41127 8.68487 9.02498 9.57607 11.04274 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.003786 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.053977 B = 7393.163088 C = 7832.687845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.122 4.122 6 C -0.100 4.100 7 C -0.066 4.066 8 C 0.094 3.906 9 N -0.681 5.681 10 C 0.211 3.789 11 H 0.000 1.000 12 C -0.124 4.124 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.066 4.066 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.331 0.669 38 H 0.031 0.969 39 H 0.003 0.997 40 H 0.080 0.920 41 H 0.261 0.739 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 4.940 -15.745 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.035 4.035 9 N -0.313 5.313 10 C 0.104 3.896 11 H 0.018 0.982 12 C -0.182 4.182 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.066 4.066 22 C -0.085 4.085 23 C -0.197 4.197 24 C -0.198 4.198 25 C -0.131 4.131 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.149 0.851 38 H 0.050 0.950 39 H 0.022 0.978 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.531 5.400 -15.208 19.835 hybrid contribution 1.136 -0.916 -0.196 1.472 sum -10.395 4.484 -15.404 19.117 Atomic orbital electron populations 1.21844 0.94670 1.01844 1.01623 1.20065 0.95652 0.95929 0.95561 1.21850 1.01374 0.95246 1.01596 1.19690 0.98549 0.96089 0.94347 1.20833 1.01136 1.00007 0.91981 1.20991 0.97552 0.94958 0.98363 1.19902 0.96667 0.95773 0.94342 1.20898 0.93236 0.95641 0.93720 1.60810 0.99997 1.62395 1.08108 1.19126 0.93962 0.90731 0.85809 0.98194 1.21713 0.95499 0.99562 1.01473 1.21248 0.91268 1.37582 1.05423 0.92283 1.24909 0.98546 0.95215 0.95274 1.69894 1.35302 1.38940 1.08738 0.86541 0.85514 0.77474 0.78132 1.20625 1.21294 1.19917 1.19682 0.97790 0.96629 0.92519 1.20238 0.94363 0.92799 1.01096 1.21818 1.00060 0.98027 0.99793 1.21827 0.96571 1.01782 0.99642 1.20735 0.98814 0.95770 0.97819 0.92753 0.92655 0.92481 0.90908 0.92485 0.92765 0.92459 0.86780 0.86248 0.91190 0.95220 0.85066 0.94984 0.97753 0.90124 0.92947 0.89534 0.92870 0.92812 0.92517 0.93029 0.91978 0.92461 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.01 37.16 0.33 -0.89 16 2 C -0.05 -0.52 3.09 -91.78 -0.28 -0.81 16 3 C -0.14 -1.31 9.01 37.15 0.33 -0.97 16 4 C -0.09 -1.07 4.78 -104.63 -0.50 -1.57 16 5 C -0.12 -1.58 8.71 -39.58 -0.34 -1.93 16 6 C -0.10 -1.50 9.67 -39.58 -0.38 -1.88 16 7 C -0.07 -1.08 5.39 -104.62 -0.56 -1.65 16 8 C 0.09 1.75 4.81 -4.98 -0.02 1.73 16 9 N -0.68 -14.78 6.28 -109.21 -0.69 -15.47 16 10 C 0.21 5.38 2.60 -68.86 -0.18 5.20 16 11 H 0.00 0.01 7.80 -51.93 -0.41 -0.39 16 12 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 13 C -0.52 -14.21 8.59 -34.44 -0.30 -14.51 16 14 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.07 -0.97 4.77 -104.62 -0.50 -1.47 16 22 C -0.07 -0.95 2.40 -91.78 -0.22 -1.17 16 23 C -0.14 -1.68 9.01 37.16 0.33 -1.35 16 24 C -0.14 -1.88 9.00 37.16 0.33 -1.55 16 25 C -0.11 -1.49 8.34 -39.58 -0.33 -1.82 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 29 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 33 H 0.11 1.27 7.10 -52.49 -0.37 0.90 16 34 H 0.12 1.71 8.04 -52.49 -0.42 1.28 16 35 H 0.07 1.32 7.30 -51.93 -0.38 0.94 16 36 H 0.03 0.56 6.61 -51.93 -0.34 0.22 16 37 H 0.33 7.11 7.01 -39.29 -0.28 6.83 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 40 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 1.43 5.17 -51.93 -0.27 1.17 16 43 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 47 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.11 1.32 6.99 -52.49 -0.37 0.95 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -28.36 378.19 -10.23 -38.60 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.81 Total: 5.49 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.04 Total: -25.77 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.36 -10.23 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659216562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.697 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds