Wall clock time and date at job start Tue Mar 31 2020 06:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46998 * 2 1 4 4 C 1.50691 * 109.47206 * 120.00363 * 2 1 3 5 5 C 1.38253 * 120.00087 * 300.00245 * 4 2 1 6 6 C 1.38216 * 120.00148 * 180.02562 * 5 4 2 7 7 C 1.38256 * 119.99983 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00062 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.46980 * 260.02479 * 8 7 6 10 10 C 1.46900 * 110.99767 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47396 * 34.99891 * 10 9 8 12 12 C 1.53004 * 109.47335 * 275.00210 * 10 9 8 13 13 C 1.50702 * 109.47146 * 154.99890 * 10 9 8 14 14 H 1.07995 * 119.99716 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99661 * 180.02562 * 13 10 9 16 16 N 1.31508 * 120.00479 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99455 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47115 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.46729 * 209.99943 * 17 15 13 20 20 H 1.48497 * 109.46994 * 329.99591 * 17 15 13 21 21 C 1.38212 * 120.00070 * 0.02562 * 7 6 5 22 22 C 1.50697 * 120.00100 * 179.97438 * 21 7 6 23 23 C 1.52997 * 109.47466 * 119.99935 * 22 21 7 24 24 C 1.52999 * 109.46961 * 240.00286 * 22 21 7 25 25 C 1.38220 * 120.00002 * 120.27474 * 4 2 1 26 26 H 1.08999 * 109.47450 * 59.99654 * 1 2 3 27 27 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47214 * 299.99839 * 1 2 3 29 29 H 1.09005 * 109.46874 * 240.00235 * 2 1 3 30 30 H 1.09001 * 109.47066 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47563 * 299.99957 * 3 2 1 32 32 H 1.09005 * 109.47116 * 60.00383 * 3 2 1 33 33 H 1.07994 * 120.00193 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99960 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46978 * 20.02448 * 8 7 6 36 36 H 1.09004 * 109.47003 * 140.02012 * 8 7 6 37 37 H 1.00894 * 110.99876 * 303.94533 * 9 8 7 38 38 H 1.09004 * 109.46618 * 300.00157 * 12 10 9 39 39 H 1.08995 * 109.47318 * 59.99710 * 12 10 9 40 40 H 1.08994 * 109.47068 * 180.02562 * 12 10 9 41 41 H 0.96998 * 120.00099 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.47120 * 359.97438 * 22 21 7 43 43 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 44 44 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 45 45 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.46716 * 299.99650 * 24 22 21 47 47 H 1.09000 * 109.47486 * 59.99568 * 24 22 21 48 48 H 1.09001 * 109.47362 * 180.02562 * 24 22 21 49 49 H 1.07991 * 120.00149 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 1.6983 -0.2382 2.4861 6 6 2.1595 -0.8895 3.6145 7 6 2.9544 -2.0136 3.4876 8 6 3.4577 -2.7234 4.7180 9 7 4.8479 -2.3263 4.9781 10 6 5.3728 -2.9998 6.1735 11 1 4.9549 -4.0045 6.2376 12 6 4.9814 -2.2042 7.4204 13 6 6.8747 -3.0853 6.0831 14 1 7.3878 -2.6803 5.2235 15 6 7.5935 -3.6816 7.0975 16 7 6.9686 -4.1752 8.1440 17 14 9.4552 -3.7869 6.9857 18 1 10.0574 -2.5791 7.6053 19 1 9.9263 -4.9986 7.7034 20 1 9.8618 -3.8668 5.5597 21 6 3.2883 -2.4857 2.2323 22 6 4.1552 -3.7105 2.0939 23 6 3.3907 -4.7928 1.3291 24 6 5.4300 -3.3493 1.3288 25 6 2.8317 -1.8309 1.1034 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.0777 0.6400 2.5853 34 1 1.8989 -0.5204 4.5955 35 1 2.8369 -2.4538 5.5725 36 1 3.4109 -3.8010 4.5605 37 1 5.4317 -2.5070 4.1753 38 1 5.3993 -1.1995 7.3564 39 1 3.8951 -2.1424 7.4858 40 1 5.3712 -2.7037 8.3073 41 1 7.4743 -4.5943 8.8578 42 1 4.4192 -4.0825 3.0839 43 1 3.1270 -4.4206 0.3391 44 1 2.4826 -5.0501 1.8743 45 1 4.0179 -5.6786 1.2287 46 1 5.1663 -2.9771 0.3388 47 1 5.9747 -2.5783 1.8737 48 1 6.0569 -4.2353 1.2283 49 1 3.0959 -2.1975 0.1226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659216562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:56 Heat of formation + Delta-G solvation = -24.113828 kcal Electronic energy + Delta-G solvation = -23626.897710 eV Core-core repulsion = 20551.673763 eV Total energy + Delta-G solvation = -3075.223947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04435 -38.11079 -36.95570 -35.44918 -34.44028 -31.95774 -30.74961 -29.40226 -28.00240 -27.91702 -27.39126 -25.84534 -24.41156 -22.84261 -21.73033 -21.68251 -19.80468 -18.62947 -17.43881 -17.10007 -16.56629 -15.79511 -15.56350 -15.52715 -15.39935 -14.85459 -14.66531 -14.48093 -14.44686 -14.24249 -14.04871 -13.58688 -13.30646 -13.20221 -13.02696 -13.01116 -12.88562 -12.76644 -12.58203 -12.53824 -12.25212 -12.21965 -12.08258 -12.01136 -11.90172 -11.78097 -11.71061 -11.33341 -11.16364 -10.90652 -10.58867 -9.57460 -9.36729 -9.01435 -8.14392 -6.28784 0.49187 0.58005 1.40940 1.42033 1.52190 2.40347 2.85027 3.14072 3.70611 3.72565 3.86144 3.92834 4.04955 4.13974 4.24032 4.31687 4.39527 4.41355 4.51602 4.57183 4.62793 4.70961 4.77209 4.79807 4.84650 4.86620 4.94364 4.96267 5.00573 5.04968 5.05391 5.14929 5.17268 5.19513 5.25969 5.28124 5.35942 5.39243 5.42455 5.44833 5.44953 5.64275 5.68203 5.81430 5.83849 5.89237 6.19598 6.21111 6.45851 6.74236 6.97240 7.41521 8.91315 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.003786 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.053977 B = 7393.163088 C = 7832.687845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.093 4.093 8 C 0.103 3.897 9 N -0.677 5.677 10 C 0.216 3.784 11 H -0.032 1.032 12 C -0.112 4.112 13 C -0.536 4.536 14 H 0.057 0.943 15 C 0.015 3.985 16 N -0.917 5.917 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.070 4.070 22 C -0.067 4.067 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.116 4.116 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.331 0.669 38 H 0.026 0.974 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.263 0.737 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 5.926 -18.294 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.079 4.079 5 C -0.140 4.140 6 C -0.130 4.130 7 C -0.093 4.093 8 C -0.026 4.026 9 N -0.309 5.309 10 C 0.108 3.892 11 H -0.014 1.014 12 C -0.171 4.171 13 C -0.574 4.574 14 H 0.075 0.925 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.070 4.070 22 C -0.086 4.086 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.134 4.134 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.149 0.851 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.866 6.394 -17.769 22.303 hybrid contribution 1.155 -1.197 0.554 1.753 sum -10.711 5.197 -17.214 20.930 Atomic orbital electron populations 1.21831 0.93588 1.01878 1.02495 1.20135 0.96468 0.96056 0.94412 1.21846 1.00762 0.94889 1.02483 1.20077 0.97114 0.95448 0.95277 1.21052 1.00977 1.00361 0.91600 1.21098 0.97736 0.94844 0.99303 1.19734 0.98799 0.97032 0.93775 1.20788 0.91257 0.95541 0.95030 1.60739 1.01501 1.61644 1.06993 1.18928 0.93344 0.89428 0.87516 1.01402 1.21540 0.96419 0.98705 1.00424 1.21533 0.92396 1.37943 1.05568 0.92514 1.25722 1.03202 0.94712 0.94840 1.70019 1.37030 1.39318 1.09292 0.85502 0.79822 0.77564 0.78425 1.20136 1.20758 1.19119 1.19775 0.97835 0.96864 0.92546 1.20204 0.95109 0.93381 0.99887 1.21776 0.99552 0.97548 1.00248 1.21796 0.95956 1.01424 1.00236 1.20966 0.98600 0.95827 0.98009 0.91007 0.93054 0.92569 0.89836 0.93443 0.90913 0.92630 0.84725 0.86322 0.91925 0.96118 0.85056 0.95435 0.96077 0.92307 0.92791 0.92826 0.90929 0.93411 0.91868 0.90857 0.94015 0.91978 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.01 71.98 0.65 -1.31 16 2 C -0.05 -0.85 3.09 -11.54 -0.04 -0.89 16 3 C -0.14 -2.16 9.01 71.98 0.65 -1.51 16 4 C -0.08 -1.76 4.78 -19.87 -0.09 -1.86 16 5 C -0.12 -2.97 8.71 22.27 0.19 -2.78 16 6 C -0.11 -3.30 9.67 22.27 0.22 -3.08 16 7 C -0.09 -3.07 5.39 -19.87 -0.11 -3.18 16 8 C 0.10 4.00 4.81 85.56 0.41 4.42 16 9 N -0.68 -30.53 6.28 -499.44 -3.13 -33.67 16 10 C 0.22 11.45 2.60 44.17 0.11 11.56 16 11 H -0.03 -1.84 7.80 -2.38 -0.02 -1.86 16 12 C -0.11 -5.84 9.19 71.98 0.66 -5.18 16 13 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 14 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 17 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C -0.07 -2.03 4.77 -19.87 -0.09 -2.12 16 22 C -0.07 -1.91 2.40 -11.54 -0.03 -1.93 16 23 C -0.13 -3.07 9.01 71.98 0.65 -2.43 16 24 C -0.14 -3.55 9.00 71.98 0.65 -2.90 16 25 C -0.12 -2.81 8.34 22.27 0.19 -2.62 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 29 H 0.08 1.21 7.88 -2.38 -0.02 1.19 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.86 7.39 -2.38 -0.02 0.84 16 33 H 0.13 2.68 7.10 -2.91 -0.02 2.66 16 34 H 0.12 3.42 8.04 -2.91 -0.02 3.40 16 35 H 0.06 2.47 7.30 -2.39 -0.02 2.45 16 36 H 0.02 0.84 6.61 -2.39 -0.02 0.83 16 37 H 0.33 14.82 7.01 -89.70 -0.63 14.19 16 38 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 40 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.05 1.86 5.17 -2.39 -0.01 1.85 16 43 H 0.07 1.37 7.40 -2.39 -0.02 1.36 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.07 1.55 7.37 -2.39 -0.02 1.54 16 47 H 0.04 1.23 8.01 -2.39 -0.02 1.21 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.14 2.67 6.99 -2.91 -0.02 2.65 16 Total: -1.00 -61.61 378.19 4.09 -57.52 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.27 Total: 28.01 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 4.68 Total: -44.52 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.89 Total: -87.04 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -61.61 4.09 -57.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659216562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal (2) G-P(sol) polarization free energy of solvation -61.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds