Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09003 * 109.47366 * 54.59952 * 3 2 1 5 5 N 1.46904 * 109.47164 * 294.59922 * 3 2 1 6 6 C 1.46906 * 110.99958 * 154.25345 * 5 3 2 7 7 C 1.52992 * 109.47032 * 174.58624 * 6 5 3 8 8 H 1.08997 * 109.47674 * 305.00169 * 7 6 5 9 9 C 1.53002 * 109.47178 * 65.00628 * 7 6 5 10 10 C 1.53000 * 109.47162 * 185.00388 * 7 6 5 11 11 C 1.50696 * 109.47373 * 175.00454 * 10 7 6 12 12 H 1.08002 * 119.99924 * 359.97438 * 11 10 7 13 13 C 1.37881 * 120.00355 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99679 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00160 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47428 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47005 * 120.00641 * 15 13 11 18 18 H 1.48501 * 109.47290 * 239.99965 * 15 13 11 19 19 C 1.50703 * 109.47194 * 174.60165 * 3 2 1 20 20 C 1.38256 * 119.99933 * 100.25167 * 19 3 2 21 21 C 1.38217 * 119.99863 * 180.29631 * 20 19 3 22 22 C 1.50702 * 119.99973 * 179.72561 * 21 20 19 23 23 C 1.38251 * 119.99861 * 359.70796 * 21 20 19 24 24 C 1.38212 * 120.00514 * 0.02562 * 23 21 20 25 25 C 1.38214 * 120.00013 * 280.00322 * 19 3 2 26 26 C 1.50696 * 119.99807 * 359.97438 * 25 19 3 27 27 H 1.08999 * 109.46990 * 305.82933 * 1 2 3 28 28 H 1.08997 * 109.47933 * 65.83636 * 1 2 3 29 29 H 1.09001 * 109.46862 * 185.84064 * 1 2 3 30 30 H 1.09000 * 109.46974 * 240.00857 * 2 1 3 31 31 H 1.08990 * 109.47652 * 119.99899 * 2 1 3 32 32 H 1.00901 * 110.99974 * 30.31093 * 5 3 2 33 33 H 1.08997 * 109.47100 * 294.59652 * 6 5 3 34 34 H 1.09004 * 109.46427 * 54.58999 * 6 5 3 35 35 H 1.08996 * 109.46840 * 300.00172 * 9 7 6 36 36 H 1.09003 * 109.47029 * 59.99663 * 9 7 6 37 37 H 1.08995 * 109.47734 * 179.97438 * 9 7 6 38 38 H 1.09005 * 109.47297 * 295.00235 * 10 7 6 39 39 H 1.09000 * 109.47172 * 55.00126 * 10 7 6 40 40 H 0.96999 * 119.99975 * 179.97438 * 14 13 11 41 41 H 1.08003 * 120.00141 * 0.02562 * 20 19 3 42 42 H 1.09006 * 109.47028 * 269.98135 * 22 21 20 43 43 H 1.08996 * 109.47176 * 29.98009 * 22 21 20 44 44 H 1.08996 * 109.46967 * 149.98182 * 22 21 20 45 45 H 1.08000 * 119.99853 * 179.97438 * 23 21 20 46 46 H 1.07992 * 120.00914 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.47218 * 269.72929 * 26 25 19 48 48 H 1.09004 * 109.46960 * 149.73074 * 26 25 19 49 49 H 1.09001 * 109.47571 * 29.73216 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5997 1.9836 0.8377 5 7 1.6595 2.0964 -1.2593 6 6 1.5623 3.5522 -1.0882 7 6 1.2981 4.2086 -2.4447 8 1 2.0699 3.9047 -3.1519 9 6 -0.0721 3.7699 -2.9654 10 6 1.3208 5.7304 -2.2880 11 6 1.1831 6.3770 -3.6422 12 1 1.0893 5.7638 -4.5263 13 6 1.1769 7.7513 -3.7525 14 7 1.2917 8.4979 -2.6760 15 14 1.0070 8.5528 -5.4312 16 1 0.8950 7.5006 -6.4731 17 1 -0.2109 9.4022 -5.4532 18 1 2.2012 9.3930 -5.7018 19 6 3.5410 1.4447 0.1337 20 6 4.3343 1.6218 -0.9847 21 6 5.7111 1.6177 -0.8630 22 6 6.5760 1.8045 -2.0829 23 6 6.2948 1.4426 0.3779 24 6 5.5017 1.2711 1.4968 25 6 4.1245 1.2749 1.3750 26 6 3.2596 1.0881 2.5949 27 1 -0.3633 0.6016 0.8332 28 1 -0.3635 0.4206 -0.9375 29 1 -0.3633 -1.0224 0.1046 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.7964 1.7161 -1.6179 33 1 0.7438 3.7840 -0.4067 34 1 2.4970 3.9327 -0.6763 35 1 -0.0882 2.6858 -3.0770 36 1 -0.8438 4.0739 -2.2581 37 1 -0.2606 4.2379 -3.9315 38 1 0.4934 6.0424 -1.6506 39 1 2.2639 6.0349 -1.8341 40 1 1.2878 9.4648 -2.7536 41 1 3.8783 1.7589 -1.9541 42 1 6.7948 0.8326 -2.5254 43 1 6.0505 2.4244 -2.8094 44 1 7.5080 2.2915 -1.7964 45 1 7.3706 1.4390 0.4730 46 1 5.9576 1.1339 2.4661 47 1 3.0410 2.0599 3.0376 48 1 3.7850 0.4679 3.3212 49 1 2.3274 0.6013 2.3084 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659841764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -13.794892 kcal Electronic energy + Delta-G solvation = -23524.477976 eV Core-core repulsion = 20449.701491 eV Total energy + Delta-G solvation = -3074.776484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87796 -37.34086 -35.27426 -33.60139 -32.51088 -31.28054 -30.41908 -29.14701 -26.94381 -26.19224 -24.88357 -24.58512 -22.48159 -22.15318 -20.98486 -19.61132 -18.84414 -16.45064 -16.22921 -15.76675 -15.32919 -14.82284 -14.57534 -14.43781 -14.03579 -13.81141 -13.50346 -13.29133 -13.11594 -12.81426 -12.66068 -12.59571 -12.48123 -12.18439 -11.94812 -11.86684 -11.77344 -11.56651 -11.37798 -11.00567 -10.95224 -10.86304 -10.82049 -10.67113 -10.54015 -10.29887 -10.10693 -9.68238 -9.12110 -8.92452 -8.52238 -8.30723 -8.23184 -8.11718 -5.95113 -3.96046 1.48029 1.62095 3.33474 3.41104 3.45078 3.87157 4.37143 4.51721 4.77673 4.90449 4.93913 5.00669 5.06498 5.19710 5.24556 5.30164 5.40826 5.53658 5.57573 5.60334 5.62631 5.67141 5.71523 5.77141 5.82266 5.85259 5.89484 5.97040 6.01233 6.03101 6.10668 6.22160 6.30424 6.31670 6.36925 6.50508 6.60614 6.62215 6.79859 6.84537 7.03208 7.14423 7.21540 7.23637 7.44161 7.71079 7.74369 7.90061 8.05611 8.49510 9.10703 9.67274 11.16502 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003988 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.415012 B = 7018.821255 C = 7983.918811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.125 3.875 4 H 0.052 0.948 5 N -0.684 5.684 6 C 0.066 3.934 7 C -0.081 4.081 8 H 0.064 0.936 9 C -0.133 4.133 10 C 0.028 3.972 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.069 4.069 20 C -0.081 4.081 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.094 4.094 26 C -0.118 4.118 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.341 0.659 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.258 0.742 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -18.633 8.285 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.015 3.985 4 H 0.070 0.930 5 N -0.317 5.317 6 C -0.063 4.063 7 C -0.100 4.100 8 H 0.082 0.918 9 C -0.190 4.190 10 C -0.010 4.010 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.098 4.098 22 C -0.170 4.170 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.094 4.094 26 C -0.175 4.175 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.289 -18.433 8.096 20.816 hybrid contribution -0.810 0.803 -0.272 1.173 sum 4.479 -17.630 7.824 19.801 Atomic orbital electron populations 1.21851 0.95737 1.01793 1.02057 1.21723 0.95573 0.95862 1.02885 1.20384 0.91467 0.94372 0.92282 0.93002 1.60524 1.39093 1.05304 1.26772 1.22159 0.99874 0.85751 0.98492 1.21186 0.96555 0.98321 0.93931 0.91753 1.21730 0.97416 0.97999 1.01888 1.19109 0.96972 0.87876 0.97022 1.21275 1.49152 0.91187 0.93295 0.92539 1.25018 0.95598 0.97610 0.96321 1.69978 1.51075 1.04760 1.27860 0.86593 0.77566 0.79456 0.84731 1.19746 1.21151 1.21103 1.19692 0.95049 0.99831 0.92444 1.21097 0.91841 0.97188 0.99800 1.19976 0.94468 1.00385 0.95015 1.20766 0.98822 1.01757 0.95609 1.20938 0.99225 1.01634 0.92434 1.20849 0.92991 1.02220 0.98209 1.19674 0.93953 1.01291 0.94529 1.20871 0.99280 1.01982 0.95326 0.92755 0.92337 0.92439 0.90939 0.91241 0.83838 0.95923 0.91567 0.94971 0.94132 0.91972 0.96853 0.96748 0.93195 0.84317 0.91651 0.91164 0.91985 0.86745 0.86683 0.91411 0.91955 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.64 37.16 0.36 -1.10 16 2 C -0.12 -1.27 5.18 -26.73 -0.14 -1.41 16 3 C 0.13 1.59 1.57 -68.86 -0.11 1.48 16 4 H 0.05 0.69 6.98 -51.93 -0.36 0.33 16 5 N -0.68 -9.82 4.86 -107.94 -0.52 -10.34 16 6 C 0.07 1.16 4.91 -3.82 -0.02 1.14 16 7 C -0.08 -1.66 2.55 -90.62 -0.23 -1.89 16 8 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 9 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 10 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 12 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C -0.07 -0.95 4.82 -104.62 -0.50 -1.46 16 20 C -0.08 -1.18 8.98 -39.58 -0.36 -1.54 16 21 C -0.10 -1.32 5.88 -104.62 -0.62 -1.93 16 22 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 23 C -0.12 -1.54 9.70 -39.59 -0.38 -1.92 16 24 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 25 C -0.09 -1.18 5.87 -104.62 -0.61 -1.80 16 26 C -0.12 -1.19 9.22 36.00 0.33 -0.85 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.56 6.65 -51.93 -0.35 0.22 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.67 6.51 -51.93 -0.34 0.33 16 32 H 0.34 4.57 5.03 -39.29 -0.20 4.37 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.27 7.94 -51.93 -0.41 0.85 16 35 H 0.03 0.50 6.81 -51.93 -0.35 0.14 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 2.14 7.13 -52.48 -0.37 1.76 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 49 H 0.07 0.65 5.08 -51.93 -0.26 0.38 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -30.06 380.35 -10.41 -40.47 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.85 Total: 2.62 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -2.49 Total: -28.81 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.21 Total: -36.83 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.06 -10.41 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659841764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.676 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds