Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 H 1.09003 * 109.47366 * 54.59952 * 3 2 1 5 5 N 1.46904 * 109.47164 * 294.59922 * 3 2 1 6 6 C 1.46906 * 110.99958 * 154.25345 * 5 3 2 7 7 C 1.52992 * 109.47032 * 174.58624 * 6 5 3 8 8 H 1.08997 * 109.47674 * 305.00169 * 7 6 5 9 9 C 1.53002 * 109.47178 * 65.00628 * 7 6 5 10 10 C 1.53000 * 109.47162 * 185.00388 * 7 6 5 11 11 C 1.50696 * 109.47373 * 175.00454 * 10 7 6 12 12 H 1.08002 * 119.99924 * 359.97438 * 11 10 7 13 13 C 1.37881 * 120.00355 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99679 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00160 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47428 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47005 * 120.00641 * 15 13 11 18 18 H 1.48501 * 109.47290 * 239.99965 * 15 13 11 19 19 C 1.50703 * 109.47194 * 174.60165 * 3 2 1 20 20 C 1.38256 * 119.99933 * 100.25167 * 19 3 2 21 21 C 1.38217 * 119.99863 * 180.29631 * 20 19 3 22 22 C 1.50702 * 119.99973 * 179.72561 * 21 20 19 23 23 C 1.38251 * 119.99861 * 359.70796 * 21 20 19 24 24 C 1.38212 * 120.00514 * 0.02562 * 23 21 20 25 25 C 1.38214 * 120.00013 * 280.00322 * 19 3 2 26 26 C 1.50696 * 119.99807 * 359.97438 * 25 19 3 27 27 H 1.08999 * 109.46990 * 305.82933 * 1 2 3 28 28 H 1.08997 * 109.47933 * 65.83636 * 1 2 3 29 29 H 1.09001 * 109.46862 * 185.84064 * 1 2 3 30 30 H 1.09000 * 109.46974 * 240.00857 * 2 1 3 31 31 H 1.08990 * 109.47652 * 119.99899 * 2 1 3 32 32 H 1.00901 * 110.99974 * 30.31093 * 5 3 2 33 33 H 1.08997 * 109.47100 * 294.59652 * 6 5 3 34 34 H 1.09004 * 109.46427 * 54.58999 * 6 5 3 35 35 H 1.08996 * 109.46840 * 300.00172 * 9 7 6 36 36 H 1.09003 * 109.47029 * 59.99663 * 9 7 6 37 37 H 1.08995 * 109.47734 * 179.97438 * 9 7 6 38 38 H 1.09005 * 109.47297 * 295.00235 * 10 7 6 39 39 H 1.09000 * 109.47172 * 55.00126 * 10 7 6 40 40 H 0.96999 * 119.99975 * 179.97438 * 14 13 11 41 41 H 1.08003 * 120.00141 * 0.02562 * 20 19 3 42 42 H 1.09006 * 109.47028 * 269.98135 * 22 21 20 43 43 H 1.08996 * 109.47176 * 29.98009 * 22 21 20 44 44 H 1.08996 * 109.46967 * 149.98182 * 22 21 20 45 45 H 1.08000 * 119.99853 * 179.97438 * 23 21 20 46 46 H 1.07992 * 120.00914 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.47218 * 269.72929 * 26 25 19 48 48 H 1.09004 * 109.46960 * 149.73074 * 26 25 19 49 49 H 1.09001 * 109.47571 * 29.73216 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5997 1.9836 0.8377 5 7 1.6595 2.0964 -1.2593 6 6 1.5623 3.5522 -1.0882 7 6 1.2981 4.2086 -2.4447 8 1 2.0699 3.9047 -3.1519 9 6 -0.0721 3.7699 -2.9654 10 6 1.3208 5.7304 -2.2880 11 6 1.1831 6.3770 -3.6422 12 1 1.0893 5.7638 -4.5263 13 6 1.1769 7.7513 -3.7525 14 7 1.2917 8.4979 -2.6760 15 14 1.0070 8.5528 -5.4312 16 1 0.8950 7.5006 -6.4731 17 1 -0.2109 9.4022 -5.4532 18 1 2.2012 9.3930 -5.7018 19 6 3.5410 1.4447 0.1337 20 6 4.3343 1.6218 -0.9847 21 6 5.7111 1.6177 -0.8630 22 6 6.5760 1.8045 -2.0829 23 6 6.2948 1.4426 0.3779 24 6 5.5017 1.2711 1.4968 25 6 4.1245 1.2749 1.3750 26 6 3.2596 1.0881 2.5949 27 1 -0.3633 0.6016 0.8332 28 1 -0.3635 0.4206 -0.9375 29 1 -0.3633 -1.0224 0.1046 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.7964 1.7161 -1.6179 33 1 0.7438 3.7840 -0.4067 34 1 2.4970 3.9327 -0.6763 35 1 -0.0882 2.6858 -3.0770 36 1 -0.8438 4.0739 -2.2581 37 1 -0.2606 4.2379 -3.9315 38 1 0.4934 6.0424 -1.6506 39 1 2.2639 6.0349 -1.8341 40 1 1.2878 9.4648 -2.7536 41 1 3.8783 1.7589 -1.9541 42 1 6.7948 0.8326 -2.5254 43 1 6.0505 2.4244 -2.8094 44 1 7.5080 2.2915 -1.7964 45 1 7.3706 1.4390 0.4730 46 1 5.9576 1.1339 2.4661 47 1 3.0410 2.0599 3.0376 48 1 3.7850 0.4679 3.3212 49 1 2.3274 0.6013 2.3084 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659841764.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -28.007928 kcal Electronic energy + Delta-G solvation = -23525.094299 eV Core-core repulsion = 20449.701491 eV Total energy + Delta-G solvation = -3075.392808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87371 -38.59832 -36.74486 -34.81265 -34.22654 -32.43371 -31.61266 -30.04147 -28.83541 -27.39837 -26.31139 -25.53997 -24.21501 -23.17877 -21.96852 -20.80323 -20.37175 -18.54136 -17.29984 -16.87335 -16.57122 -16.45590 -15.80330 -15.49871 -15.39879 -14.92393 -14.68502 -14.54033 -14.20016 -13.95429 -13.92263 -13.81287 -13.58411 -13.43661 -13.29401 -13.14663 -12.82842 -12.75746 -12.72435 -12.60887 -12.44813 -12.23837 -12.04560 -11.83371 -11.80353 -11.73508 -11.47215 -11.41411 -11.06310 -10.89347 -10.54348 -9.54209 -9.34402 -9.18371 -8.17508 -6.26705 0.50248 0.61902 1.39484 1.39969 1.53119 2.41872 2.88808 3.16048 3.21041 3.82149 3.99862 4.06378 4.09771 4.18039 4.24498 4.28720 4.29998 4.39950 4.43709 4.48244 4.62472 4.72132 4.74418 4.75588 4.80866 4.83344 4.86898 4.90846 4.96470 5.02436 5.05013 5.09688 5.16304 5.17718 5.25452 5.34969 5.39282 5.39963 5.47739 5.49402 5.56116 5.64610 5.77996 5.82430 5.83684 5.89801 6.16704 6.26456 6.32261 6.58234 6.89526 7.41709 8.94967 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003988 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.415012 B = 7018.821255 C = 7983.918811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.128 3.872 4 H 0.048 0.952 5 N -0.679 5.679 6 C 0.084 3.916 7 C -0.071 4.071 8 H 0.054 0.946 9 C -0.124 4.124 10 C 0.034 3.966 11 C -0.526 4.526 12 H 0.061 0.939 13 C -0.002 4.002 14 N -0.937 5.937 15 Si 0.961 3.039 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.084 4.084 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.116 4.116 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.349 0.651 33 H 0.022 0.978 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.044 0.956 38 H -0.011 1.011 39 H -0.019 1.019 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -20.324 8.297 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.066 0.934 5 N -0.313 5.313 6 C -0.045 4.045 7 C -0.090 4.090 8 H 0.073 0.927 9 C -0.182 4.182 10 C -0.004 4.004 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.786 3.214 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.105 4.105 26 C -0.172 4.172 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.171 0.829 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.007 0.993 39 H -0.001 1.001 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.184 -20.149 8.103 22.328 hybrid contribution -0.727 1.315 -0.218 1.518 sum 4.456 -18.835 7.885 20.899 Atomic orbital electron populations 1.21844 0.94665 1.02875 1.01860 1.21664 0.96381 0.93910 1.03247 1.20432 0.91176 0.95657 0.90947 0.93378 1.60400 1.39518 1.03205 1.28198 1.21766 0.98605 0.87743 0.96378 1.20970 0.97753 0.94763 0.95515 0.92714 1.21628 0.95739 1.00129 1.00677 1.18992 0.94055 0.91752 0.95559 1.21657 1.48791 0.91774 0.94200 0.92033 1.25955 0.95140 0.98373 1.00485 1.70115 1.52088 1.05163 1.30387 0.85457 0.77666 0.78503 0.79799 1.18461 1.20452 1.20642 1.19878 0.95463 1.00272 0.92887 1.21092 0.92749 0.98970 0.99491 1.20246 0.94351 1.00490 0.96282 1.20771 0.98795 1.02410 0.94738 1.21239 1.00492 1.01116 0.92074 1.21215 0.92955 1.01232 0.99241 1.20001 0.94725 1.00819 0.94909 1.20902 0.99379 1.02324 0.94638 0.92721 0.92720 0.90777 0.91365 0.90057 0.82915 0.96012 0.93729 0.91405 0.94066 0.93654 0.99312 1.00095 0.92986 0.86031 0.90237 0.92537 0.90790 0.84644 0.84270 0.91619 0.90001 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.64 71.98 0.69 -1.83 16 2 C -0.11 -2.17 5.18 30.59 0.16 -2.02 16 3 C 0.13 3.16 1.57 44.17 0.07 3.23 16 4 H 0.05 1.25 6.98 -2.39 -0.02 1.23 16 5 N -0.68 -19.32 4.86 -495.43 -2.41 -21.73 16 6 C 0.08 3.03 4.91 86.30 0.42 3.46 16 7 C -0.07 -2.97 2.55 -10.80 -0.03 -3.00 16 8 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 9 C -0.12 -4.54 8.77 71.98 0.63 -3.91 16 10 C 0.03 1.84 4.45 29.85 0.13 1.97 16 11 C -0.53 -30.24 8.41 25.60 0.22 -30.03 16 12 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 14 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 15 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 C -0.08 -2.29 4.82 -19.86 -0.10 -2.39 16 20 C -0.10 -3.11 8.98 22.27 0.20 -2.91 16 21 C -0.11 -3.04 5.88 -19.87 -0.12 -3.15 16 22 C -0.11 -2.50 10.01 71.24 0.71 -1.78 16 23 C -0.13 -3.10 9.70 22.27 0.22 -2.88 16 24 C -0.13 -2.90 9.70 22.27 0.22 -2.68 16 25 C -0.10 -2.50 5.87 -19.87 -0.12 -2.61 16 26 C -0.12 -2.11 9.22 71.23 0.66 -1.45 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.93 6.65 -2.39 -0.02 0.92 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.37 6.51 -2.39 -0.02 1.36 16 32 H 0.35 8.89 5.03 -89.69 -0.45 8.44 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 1.79 7.94 -2.39 -0.02 1.77 16 35 H 0.07 1.98 6.81 -2.39 -0.02 1.97 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.80 6.95 -2.39 -0.02 1.78 16 38 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 41 H 0.12 3.92 7.13 -2.91 -0.02 3.90 16 42 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.40 8.08 -2.39 -0.02 1.38 16 44 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 45 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 46 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 49 H 0.07 1.25 5.08 -2.39 -0.01 1.24 16 Total: -1.00 -66.27 380.35 4.78 -61.49 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.45 Total: 22.79 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 4.43 Total: -51.68 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.12 Total: -79.69 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.27 4.78 -61.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659841764.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.484 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds