Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47302 * 2 1 4 4 H 1.09000 * 109.46960 * 303.26414 * 3 2 1 5 5 C 1.53001 * 109.46875 * 183.26693 * 3 2 1 6 6 N 1.46897 * 109.47375 * 63.26692 * 3 2 1 7 7 C 1.46900 * 110.99892 * 193.17805 * 6 3 2 8 8 C 1.50697 * 109.47018 * 66.04971 * 7 6 3 9 9 C 1.38237 * 119.99576 * 269.72149 * 8 7 6 10 10 C 1.38244 * 119.99825 * 179.76189 * 9 8 7 11 11 C 1.38235 * 119.99770 * 0.51648 * 10 9 8 12 12 C 1.38235 * 119.99906 * 359.73717 * 11 10 9 13 13 C 1.38227 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.46902 * 111.00013 * 69.22626 * 6 3 2 15 15 C 1.52996 * 109.47114 * 195.92837 * 14 6 3 16 16 H 1.09006 * 109.47202 * 304.77386 * 15 14 6 17 17 C 1.52995 * 109.47433 * 64.77674 * 15 14 6 18 18 C 1.53005 * 109.47221 * 184.77701 * 15 14 6 19 19 C 1.50704 * 109.47116 * 174.99691 * 18 15 14 20 20 H 1.07999 * 119.99825 * 0.02562 * 19 18 15 21 21 C 1.37877 * 119.99695 * 179.97438 * 19 18 15 22 22 N 1.31509 * 119.99997 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99752 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46789 * 60.00141 * 23 21 19 25 25 H 1.48496 * 109.47221 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47339 * 300.00452 * 23 21 19 27 27 H 1.09001 * 109.46641 * 300.00621 * 1 2 3 28 28 H 1.08995 * 109.46744 * 59.99636 * 1 2 3 29 29 H 1.08991 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47026 * 239.99757 * 2 1 3 31 31 H 1.09003 * 109.47317 * 120.00074 * 2 1 3 32 32 H 1.09000 * 109.47098 * 299.99636 * 5 3 2 33 33 H 1.09004 * 109.47463 * 60.00203 * 5 3 2 34 34 H 1.09000 * 109.47202 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46785 * 186.04730 * 7 6 3 36 36 H 1.08993 * 109.47143 * 306.04742 * 7 6 3 37 37 H 1.07996 * 120.00330 * 0.02562 * 9 8 7 38 38 H 1.07994 * 120.00073 * 180.23083 * 10 9 8 39 39 H 1.07999 * 119.99782 * 179.72172 * 11 10 9 40 40 H 1.08002 * 119.99790 * 179.97438 * 12 11 10 41 41 H 1.08003 * 119.99752 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46801 * 315.92731 * 14 6 3 43 43 H 1.09000 * 109.47195 * 75.92791 * 14 6 3 44 44 H 1.08997 * 109.47434 * 184.90492 * 17 15 14 45 45 H 1.09004 * 109.47162 * 304.90050 * 17 15 14 46 46 H 1.08998 * 109.47226 * 64.90195 * 17 15 14 47 47 H 1.08987 * 109.46956 * 294.99797 * 18 15 14 48 48 H 1.09000 * 109.46759 * 54.99734 * 18 15 14 49 49 H 0.97002 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6297 1.9729 -0.8593 5 6 3.5679 1.4431 -0.0822 6 7 1.6160 2.1119 1.2369 7 6 1.8092 3.5650 1.1419 8 6 0.8833 4.1274 0.0944 9 6 1.3033 4.2242 -1.2191 10 6 0.4522 4.7355 -2.1810 11 6 -0.8149 5.1600 -1.8275 12 6 -1.2330 5.0682 -0.5131 13 6 -0.3837 4.5523 0.4479 14 6 2.3220 1.5619 2.4018 15 6 1.5954 1.9787 3.6821 16 1 1.4995 3.0642 3.7085 17 6 0.2040 1.3430 3.7089 18 6 2.3948 1.5076 4.8987 19 6 1.7451 2.0231 6.1570 20 1 0.8512 2.6260 6.0951 21 6 2.2914 1.7241 7.3871 22 7 3.3796 0.9896 7.4623 23 14 1.4865 2.3637 8.9468 24 1 0.0976 1.8453 9.0353 25 1 2.2623 1.9064 10.1275 26 1 1.4598 3.8482 8.9172 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9782 0.9127 0.7771 33 1 3.8826 0.9465 -1.0001 34 1 3.9313 2.4708 -0.0827 35 1 1.5894 4.0245 2.1056 36 1 2.8420 3.7769 0.8656 37 1 2.2947 3.8963 -1.4946 38 1 0.7790 4.8076 -3.2078 39 1 -1.4782 5.5637 -2.5781 40 1 -2.2228 5.4002 -0.2368 41 1 -0.7102 4.4809 1.4749 42 1 2.3432 0.4742 2.3337 43 1 3.3424 1.9446 2.4222 44 1 -0.3458 1.7084 4.5762 45 1 -0.3344 1.6086 2.7991 46 1 0.3009 0.2591 3.7704 47 1 2.4152 0.4182 4.9203 48 1 3.4139 1.8889 4.8335 49 1 3.7641 0.7796 8.3277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664083509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = 2.464942 kcal Electronic energy + Delta-G solvation = -24035.801993 eV Core-core repulsion = 20961.730588 eV Total energy + Delta-G solvation = -3074.071405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.78257 -38.18980 -34.98619 -33.26622 -32.17455 -30.91961 -30.78545 -29.14508 -26.88621 -26.11592 -24.88447 -23.36565 -22.68620 -22.34934 -21.21582 -19.56579 -18.57207 -16.68380 -16.29708 -15.84016 -15.42433 -15.14927 -14.67391 -14.33300 -14.31204 -13.72753 -13.58165 -13.40887 -13.21517 -12.96173 -12.59914 -12.40707 -12.13375 -12.06916 -12.02984 -11.64974 -11.40283 -11.09939 -11.05094 -10.98010 -10.92210 -10.79881 -10.64244 -10.57214 -10.36310 -10.20114 -10.13290 -9.54267 -9.07270 -8.93893 -8.86835 -8.70727 -8.29738 -7.87339 -5.94911 -3.95753 1.36342 1.42873 3.35933 3.40323 3.42812 3.74215 4.33639 4.51272 4.82680 4.87014 4.93863 4.99813 5.11827 5.18891 5.35650 5.40417 5.41703 5.51594 5.54570 5.62211 5.64090 5.73542 5.79213 5.81735 5.93336 5.98792 6.06134 6.08248 6.13176 6.19441 6.23313 6.27442 6.41693 6.45433 6.47908 6.52139 6.57364 6.67304 6.71795 6.79984 7.02100 7.08762 7.21099 7.25698 7.47787 7.52374 7.72819 7.89791 8.05747 8.50193 9.10601 9.67503 11.16616 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.004087 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.628305 B = 6848.693287 C = 7615.694002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.073 3.927 4 H 0.082 0.918 5 C -0.187 4.187 6 N -0.517 5.517 7 C 0.085 3.915 8 C -0.064 4.064 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.097 4.097 14 C 0.058 3.942 15 C -0.079 4.079 16 H 0.053 0.947 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.888 3.112 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 4.242 -19.969 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.036 4.036 4 H 0.100 0.900 5 C -0.246 4.246 6 N -0.240 5.240 7 C -0.042 4.042 8 C -0.064 4.064 9 C -0.136 4.136 10 C -0.143 4.143 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.115 4.115 14 C -0.069 4.069 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.179 4.179 18 C -0.010 4.010 19 C -0.549 4.549 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.033 0.967 48 H 0.029 0.971 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.323 4.061 -19.761 20.865 hybrid contribution 0.601 0.441 0.808 1.099 sum -4.723 4.503 -18.953 20.045 Atomic orbital electron populations 1.21645 0.95329 1.00403 1.02544 1.21544 0.96816 0.95326 1.01350 1.21840 0.92518 0.95556 0.93661 0.89967 1.22491 0.98157 1.01700 1.02280 1.62239 1.57405 1.01842 1.02476 1.21136 0.95773 0.89273 0.98026 1.19840 0.95120 0.97343 0.94122 1.21057 0.99642 1.00039 0.92876 1.21054 0.94389 0.99784 0.99042 1.21078 0.96331 1.00848 0.96327 1.21144 0.99615 0.99952 0.93282 1.21101 0.93191 0.97399 0.99839 1.22365 0.95036 0.99581 0.89903 1.21197 0.95862 0.99208 0.93491 0.92825 1.21584 0.96822 0.99531 0.99943 1.19118 0.94590 0.96415 0.90831 1.21199 1.10859 1.31879 0.91011 0.92690 1.25006 0.95042 0.95368 0.99061 1.69953 1.20800 1.38320 1.24672 0.86718 0.79461 0.79244 0.82928 1.20280 1.21411 1.20346 0.90891 0.93793 0.93941 0.92614 0.91683 0.91845 0.92646 0.92894 0.89203 0.94180 0.86597 0.86578 0.86613 0.86349 0.85757 0.90979 0.95130 0.93229 0.93624 0.94291 0.96708 0.97095 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.79 37.16 0.36 -1.39 16 2 C -0.11 -1.38 5.37 -26.73 -0.14 -1.52 16 3 C 0.07 0.90 2.14 -67.71 -0.15 0.76 16 4 H 0.08 1.00 5.31 -51.93 -0.28 0.73 16 5 C -0.19 -2.20 8.45 37.16 0.31 -1.89 16 6 N -0.52 -7.27 3.12 -228.09 -0.71 -7.98 16 7 C 0.09 1.16 4.87 -4.98 -0.02 1.13 16 8 C -0.06 -0.79 4.91 -104.63 -0.51 -1.31 16 9 C -0.12 -1.32 7.86 -39.58 -0.31 -1.63 16 10 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 11 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 12 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 13 C -0.10 -1.19 9.70 -39.59 -0.38 -1.57 16 14 C 0.06 0.97 2.98 -3.83 -0.01 0.96 16 15 C -0.08 -1.58 2.35 -90.62 -0.21 -1.79 16 16 H 0.05 1.09 6.45 -51.93 -0.34 0.76 16 17 C -0.12 -2.32 8.86 37.15 0.33 -1.99 16 18 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 19 C -0.51 -14.27 8.47 -34.44 -0.29 -14.56 16 20 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 23 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.87 6.31 -51.93 -0.33 0.55 16 32 H 0.06 0.82 6.65 -51.93 -0.35 0.48 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.61 6.71 -51.93 -0.35 0.26 16 35 H 0.09 1.33 6.28 -51.93 -0.33 1.01 16 36 H 0.04 0.53 6.51 -51.93 -0.34 0.19 16 37 H 0.12 1.18 7.81 -52.49 -0.41 0.77 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 42 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 43 H 0.03 0.53 7.15 -51.93 -0.37 0.16 16 44 H 0.05 1.01 7.10 -51.93 -0.37 0.64 16 45 H 0.04 0.78 6.86 -51.93 -0.36 0.42 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.01 0.40 8.14 -51.94 -0.42 -0.02 16 48 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -29.23 373.82 -10.44 -39.67 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.63 Total: 0.01 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.45 Total: -27.78 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.02 Total: -34.28 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.23 -10.44 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.138 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds