Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47302 * 2 1 4 4 H 1.09000 * 109.46960 * 303.26414 * 3 2 1 5 5 C 1.53001 * 109.46875 * 183.26693 * 3 2 1 6 6 N 1.46897 * 109.47375 * 63.26692 * 3 2 1 7 7 C 1.46900 * 110.99892 * 193.17805 * 6 3 2 8 8 C 1.50697 * 109.47018 * 66.04971 * 7 6 3 9 9 C 1.38237 * 119.99576 * 269.72149 * 8 7 6 10 10 C 1.38244 * 119.99825 * 179.76189 * 9 8 7 11 11 C 1.38235 * 119.99770 * 0.51648 * 10 9 8 12 12 C 1.38235 * 119.99906 * 359.73717 * 11 10 9 13 13 C 1.38227 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.46902 * 111.00013 * 69.22626 * 6 3 2 15 15 C 1.52996 * 109.47114 * 195.92837 * 14 6 3 16 16 H 1.09006 * 109.47202 * 304.77386 * 15 14 6 17 17 C 1.52995 * 109.47433 * 64.77674 * 15 14 6 18 18 C 1.53005 * 109.47221 * 184.77701 * 15 14 6 19 19 C 1.50704 * 109.47116 * 174.99691 * 18 15 14 20 20 H 1.07999 * 119.99825 * 0.02562 * 19 18 15 21 21 C 1.37877 * 119.99695 * 179.97438 * 19 18 15 22 22 N 1.31509 * 119.99997 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99752 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46789 * 60.00141 * 23 21 19 25 25 H 1.48496 * 109.47221 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47339 * 300.00452 * 23 21 19 27 27 H 1.09001 * 109.46641 * 300.00621 * 1 2 3 28 28 H 1.08995 * 109.46744 * 59.99636 * 1 2 3 29 29 H 1.08991 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47026 * 239.99757 * 2 1 3 31 31 H 1.09003 * 109.47317 * 120.00074 * 2 1 3 32 32 H 1.09000 * 109.47098 * 299.99636 * 5 3 2 33 33 H 1.09004 * 109.47463 * 60.00203 * 5 3 2 34 34 H 1.09000 * 109.47202 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46785 * 186.04730 * 7 6 3 36 36 H 1.08993 * 109.47143 * 306.04742 * 7 6 3 37 37 H 1.07996 * 120.00330 * 0.02562 * 9 8 7 38 38 H 1.07994 * 120.00073 * 180.23083 * 10 9 8 39 39 H 1.07999 * 119.99782 * 179.72172 * 11 10 9 40 40 H 1.08002 * 119.99790 * 179.97438 * 12 11 10 41 41 H 1.08003 * 119.99752 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46801 * 315.92731 * 14 6 3 43 43 H 1.09000 * 109.47195 * 75.92791 * 14 6 3 44 44 H 1.08997 * 109.47434 * 184.90492 * 17 15 14 45 45 H 1.09004 * 109.47162 * 304.90050 * 17 15 14 46 46 H 1.08998 * 109.47226 * 64.90195 * 17 15 14 47 47 H 1.08987 * 109.46956 * 294.99797 * 18 15 14 48 48 H 1.09000 * 109.46759 * 54.99734 * 18 15 14 49 49 H 0.97002 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6297 1.9729 -0.8593 5 6 3.5679 1.4431 -0.0822 6 7 1.6160 2.1119 1.2369 7 6 1.8092 3.5650 1.1419 8 6 0.8833 4.1274 0.0944 9 6 1.3033 4.2242 -1.2191 10 6 0.4522 4.7355 -2.1810 11 6 -0.8149 5.1600 -1.8275 12 6 -1.2330 5.0682 -0.5131 13 6 -0.3837 4.5523 0.4479 14 6 2.3220 1.5619 2.4018 15 6 1.5954 1.9787 3.6821 16 1 1.4995 3.0642 3.7085 17 6 0.2040 1.3430 3.7089 18 6 2.3948 1.5076 4.8987 19 6 1.7451 2.0231 6.1570 20 1 0.8512 2.6260 6.0951 21 6 2.2914 1.7241 7.3871 22 7 3.3796 0.9896 7.4623 23 14 1.4865 2.3637 8.9468 24 1 0.0976 1.8453 9.0353 25 1 2.2623 1.9064 10.1275 26 1 1.4598 3.8482 8.9172 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9782 0.9127 0.7771 33 1 3.8826 0.9465 -1.0001 34 1 3.9313 2.4708 -0.0827 35 1 1.5894 4.0245 2.1056 36 1 2.8420 3.7769 0.8656 37 1 2.2947 3.8963 -1.4946 38 1 0.7790 4.8076 -3.2078 39 1 -1.4782 5.5637 -2.5781 40 1 -2.2228 5.4002 -0.2368 41 1 -0.7102 4.4809 1.4749 42 1 2.3432 0.4742 2.3337 43 1 3.3424 1.9446 2.4222 44 1 -0.3458 1.7084 4.5762 45 1 -0.3344 1.6086 2.7991 46 1 0.3009 0.2591 3.7704 47 1 2.4152 0.4182 4.9203 48 1 3.4139 1.8889 4.8335 49 1 3.7641 0.7796 8.3277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664083509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -10.450710 kcal Electronic energy + Delta-G solvation = -24036.362058 eV Core-core repulsion = 20961.730588 eV Total energy + Delta-G solvation = -3074.631470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79505 -39.21840 -36.66920 -34.54733 -33.94004 -31.89338 -31.71237 -30.27273 -28.76902 -27.44844 -26.14888 -24.88777 -23.87195 -23.35795 -22.12890 -21.06167 -19.87031 -18.42285 -17.53549 -17.00074 -16.60103 -16.32228 -16.22422 -15.61272 -15.52786 -14.97965 -14.61722 -14.52027 -14.34306 -14.13056 -13.98443 -13.80397 -13.45503 -13.28421 -13.12016 -13.04243 -12.86758 -12.73886 -12.64599 -12.27582 -12.18430 -12.04802 -11.96528 -11.80190 -11.79126 -11.55118 -11.41239 -11.22771 -10.97157 -10.83446 -10.51384 -9.70745 -9.59517 -9.04318 -8.16212 -6.25070 0.51556 0.59524 1.39844 1.42467 1.50084 2.42464 2.82390 3.17175 3.26581 3.84940 3.93030 4.00665 4.16282 4.20549 4.24096 4.34469 4.37403 4.41720 4.51371 4.56878 4.59153 4.61292 4.70543 4.78187 4.79555 4.86434 4.88977 4.98221 5.02864 5.06750 5.12880 5.21044 5.23465 5.25240 5.28645 5.33289 5.43774 5.49428 5.51744 5.59264 5.64160 5.66900 5.70839 5.82562 5.85005 5.91396 6.17429 6.23182 6.32274 6.37454 6.90789 7.43057 8.95645 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.004087 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.628305 B = 6848.693287 C = 7615.694002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.075 3.925 4 H 0.093 0.907 5 C -0.183 4.183 6 N -0.515 5.515 7 C 0.088 3.912 8 C -0.077 4.077 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.115 4.115 14 C 0.074 3.926 15 C -0.069 4.069 16 H 0.050 0.950 17 C -0.108 4.108 18 C 0.035 3.965 19 C -0.528 4.528 20 H 0.059 0.941 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.285 1.285 26 H -0.268 1.268 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.032 0.968 47 H -0.012 1.012 48 H -0.017 1.017 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 5.067 -21.995 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.033 4.033 4 H 0.111 0.889 5 C -0.242 4.242 6 N -0.238 5.238 7 C -0.039 4.039 8 C -0.077 4.077 9 C -0.141 4.141 10 C -0.142 4.142 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.053 4.053 15 C -0.088 4.088 16 H 0.068 0.932 17 C -0.166 4.166 18 C -0.002 4.002 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.193 1.193 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.007 0.993 48 H 0.001 0.999 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.620 4.894 -21.804 23.306 hybrid contribution 1.001 0.200 1.364 1.704 sum -5.619 5.094 -20.440 21.801 Atomic orbital electron populations 1.21582 0.95302 1.00713 1.01819 1.21561 0.96787 0.95117 1.01539 1.21894 0.93051 0.95588 0.92744 0.88924 1.22443 0.97455 1.01769 1.02541 1.62172 1.56872 1.02389 1.02345 1.21064 0.96395 0.88668 0.97753 1.19730 0.95049 0.98516 0.94403 1.21192 1.00350 1.00174 0.92430 1.21383 0.94171 0.98683 1.00005 1.21430 0.96713 0.99945 0.96450 1.21377 1.00116 0.99536 0.93497 1.21151 0.93711 0.98594 0.99937 1.22019 0.94207 0.99321 0.89797 1.20991 0.95966 0.98835 0.92972 0.93189 1.21448 0.96032 0.98816 1.00273 1.18993 0.93839 0.94483 0.92918 1.21600 1.11030 1.31785 0.92154 0.92290 1.25916 0.95576 0.95538 1.02748 1.70093 1.22313 1.39624 1.25588 0.85608 0.78675 0.78974 0.78452 1.19253 1.21001 1.19319 0.92941 0.93049 0.93174 0.90589 0.93296 0.93552 0.90616 0.92823 0.91150 0.93973 0.85671 0.84087 0.84066 0.84784 0.86789 0.91334 0.96123 0.94781 0.91416 0.94930 0.99330 0.99870 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.79 71.98 0.70 -2.48 16 2 C -0.11 -2.59 5.37 30.59 0.16 -2.42 16 3 C 0.08 1.77 2.14 44.92 0.10 1.86 16 4 H 0.09 2.05 5.31 -2.39 -0.01 2.04 16 5 C -0.18 -4.09 8.45 71.98 0.61 -3.48 16 6 N -0.51 -14.44 3.12 -875.54 -2.73 -17.17 16 7 C 0.09 2.41 4.87 85.56 0.42 2.82 16 8 C -0.08 -1.84 4.91 -19.87 -0.10 -1.94 16 9 C -0.12 -2.49 7.86 22.27 0.17 -2.31 16 10 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 11 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 12 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 13 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 14 C 0.07 2.57 2.98 86.30 0.26 2.82 16 15 C -0.07 -2.85 2.35 -10.80 -0.03 -2.88 16 16 H 0.05 2.11 6.45 -2.38 -0.02 2.10 16 17 C -0.11 -4.22 8.86 71.98 0.64 -3.58 16 18 C 0.04 1.88 4.45 29.85 0.13 2.01 16 19 C -0.53 -30.23 8.47 25.60 0.22 -30.01 16 20 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 21 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 22 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 23 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H 0.05 1.43 6.95 -2.39 -0.02 1.41 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.29 6.31 -2.39 -0.02 1.28 16 32 H 0.05 1.19 6.65 -2.39 -0.02 1.18 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 1.18 6.71 -2.39 -0.02 1.16 16 35 H 0.07 2.17 6.28 -2.39 -0.01 2.15 16 36 H 0.04 1.12 6.51 -2.39 -0.02 1.10 16 37 H 0.13 2.24 7.81 -2.91 -0.02 2.22 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.11 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.07 2.43 6.06 -2.39 -0.01 2.41 16 43 H 0.02 0.75 7.15 -2.39 -0.02 0.73 16 44 H 0.03 1.40 7.10 -2.39 -0.02 1.38 16 45 H 0.07 2.32 6.86 -2.38 -0.02 2.31 16 46 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 47 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 49 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -63.86 373.82 5.11 -58.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.89 Total: 16.73 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.64 Total: -47.84 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.45 Total: -74.68 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.86 5.11 -58.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.302 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds