Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 H 1.09002 * 109.47205 * 55.00848 * 3 2 1 5 5 C 1.53001 * 109.47027 * 175.00777 * 3 2 1 6 6 N 1.46895 * 109.46905 * 295.00685 * 3 2 1 7 7 C 1.46902 * 110.99800 * 94.02073 * 6 3 2 8 8 C 1.50701 * 109.47123 * 72.69402 * 7 6 3 9 9 C 1.38232 * 119.99605 * 265.84377 * 8 7 6 10 10 C 1.38245 * 120.00044 * 179.76696 * 9 8 7 11 11 C 1.38229 * 119.99684 * 0.50971 * 10 9 8 12 12 C 1.38245 * 120.00112 * 359.74214 * 11 10 9 13 13 C 1.38230 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.46900 * 111.00409 * 330.06377 * 6 3 2 15 15 C 1.52996 * 109.47197 * 287.17195 * 14 6 3 16 16 H 1.09002 * 109.47494 * 61.12776 * 15 14 6 17 17 C 1.53005 * 109.47221 * 301.12929 * 15 14 6 18 18 C 1.53000 * 109.47060 * 181.13266 * 15 14 6 19 19 C 1.50704 * 109.46673 * 184.99920 * 18 15 14 20 20 H 1.07994 * 120.00653 * 359.97438 * 19 18 15 21 21 C 1.37882 * 119.99697 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99800 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46872 * 90.00611 * 23 21 19 25 25 H 1.48506 * 109.47182 * 210.00270 * 23 21 19 26 26 H 1.48496 * 109.47522 * 330.00233 * 23 21 19 27 27 H 1.09004 * 109.47243 * 307.02322 * 1 2 3 28 28 H 1.09006 * 109.46858 * 67.01575 * 1 2 3 29 29 H 1.08996 * 109.47364 * 187.02047 * 1 2 3 30 30 H 1.09002 * 109.47331 * 240.00050 * 2 1 3 31 31 H 1.09002 * 109.47197 * 120.00311 * 2 1 3 32 32 H 1.08999 * 109.46641 * 186.59788 * 5 3 2 33 33 H 1.09000 * 109.47474 * 306.59633 * 5 3 2 34 34 H 1.08999 * 109.47095 * 66.59911 * 5 3 2 35 35 H 1.09006 * 109.47205 * 192.68997 * 7 6 3 36 36 H 1.08997 * 109.47158 * 312.68847 * 7 6 3 37 37 H 1.08004 * 120.00436 * 359.97438 * 9 8 7 38 38 H 1.07993 * 120.00137 * 180.22753 * 10 9 8 39 39 H 1.08002 * 120.00183 * 179.72518 * 11 10 9 40 40 H 1.07994 * 119.99980 * 179.97438 * 12 11 10 41 41 H 1.07996 * 119.99961 * 179.97438 * 13 12 11 42 42 H 1.09006 * 109.46838 * 167.17089 * 14 6 3 43 43 H 1.08996 * 109.46855 * 47.17297 * 14 6 3 44 44 H 1.09003 * 109.47287 * 300.00285 * 17 15 14 45 45 H 1.09007 * 109.47006 * 60.00088 * 17 15 14 46 46 H 1.09000 * 109.47166 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.46865 * 304.99178 * 18 15 14 48 48 H 1.08994 * 109.47300 * 64.99805 * 18 15 14 49 49 H 0.97004 * 119.99725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6056 1.9815 0.8419 5 6 3.5649 1.4442 0.1255 6 7 1.6513 2.0993 -1.2551 7 6 0.3861 2.8289 -1.0975 8 6 0.6198 4.0671 -0.2709 9 6 0.4096 4.0360 1.0950 10 6 0.6287 5.1705 1.8541 11 6 1.0478 6.3388 1.2457 12 6 1.2530 6.3713 -0.1210 13 6 1.0386 5.2356 -0.8793 14 6 1.5653 1.1274 -2.3533 15 6 2.9745 0.6960 -2.7641 16 1 3.4701 0.2201 -1.9179 17 6 3.7769 1.9236 -3.2003 18 6 2.8860 -0.2948 -3.9266 19 6 4.2635 -0.8132 -4.2507 20 1 5.1167 -0.4700 -3.6845 21 6 4.4345 -1.7257 -5.2701 22 7 3.3955 -2.1432 -5.9600 23 14 6.1419 -2.3677 -5.6723 24 1 6.4137 -3.5874 -4.8699 25 1 6.2184 -2.6991 -7.1179 26 1 7.1509 -1.3273 -5.3489 27 1 -0.3634 0.6188 0.8205 28 1 -0.3633 0.4013 -0.9461 29 1 -0.3634 -1.0199 0.1256 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9185 2.4685 0.2434 33 1 3.8586 0.8562 0.9950 34 1 4.0039 1.0093 -0.7724 35 1 0.0061 3.1136 -2.0788 36 1 -0.3419 2.1901 -0.5974 37 1 0.0774 3.1245 1.5697 38 1 0.4679 5.1452 2.9217 39 1 1.2146 7.2263 1.8380 40 1 1.5801 7.2842 -0.5964 41 1 1.1985 5.2611 -1.9471 42 1 1.0626 1.5853 -3.2052 43 1 1.0001 0.2557 -2.0235 44 1 3.2814 2.3997 -4.0465 45 1 3.8399 2.6296 -2.3721 46 1 4.7810 1.6164 -3.4926 47 1 2.2412 -1.1275 -3.6459 48 1 2.4717 0.2070 -4.8010 49 1 3.5158 -2.7849 -6.6774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664083510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = 21.563379 kcal Electronic energy + Delta-G solvation = -24168.740917 eV Core-core repulsion = 21095.497682 eV Total energy + Delta-G solvation = -3073.243235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94184 -38.53663 -34.67393 -33.04722 -32.16959 -30.90400 -30.49245 -30.06821 -26.96412 -26.12543 -24.43447 -23.34812 -22.71330 -22.33236 -21.10462 -19.44580 -18.90202 -16.75725 -16.56423 -16.10998 -15.33423 -15.22006 -14.88153 -14.37931 -14.19168 -13.53890 -13.39928 -13.25207 -12.94533 -12.70687 -12.66012 -12.38012 -12.36985 -12.16820 -11.80426 -11.69766 -11.27301 -11.19178 -11.03661 -10.86099 -10.84579 -10.74780 -10.62466 -10.57548 -10.32286 -10.19584 -10.13109 -9.40567 -9.00262 -8.91876 -8.88470 -8.70686 -8.29052 -7.77950 -5.94656 -3.95212 1.34445 1.40453 3.34596 3.41079 3.44581 3.72482 4.35398 4.51578 4.80812 4.85180 4.97795 5.01314 5.08684 5.21751 5.27010 5.37622 5.41350 5.49368 5.57687 5.61111 5.65602 5.76550 5.81078 5.92267 6.01225 6.01799 6.05397 6.09198 6.10482 6.17723 6.24645 6.37375 6.39499 6.44722 6.48147 6.50043 6.64009 6.67721 6.70965 6.88166 6.99909 7.17072 7.27416 7.31552 7.49138 7.56411 7.74196 7.91291 8.06549 8.50968 9.11411 9.68012 11.16847 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.003760 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.601039 B = 7444.694134 C = 7841.128990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.164 4.164 3 C 0.083 3.917 4 H 0.070 0.930 5 C -0.154 4.154 6 N -0.518 5.518 7 C 0.079 3.921 8 C -0.064 4.064 9 C -0.116 4.116 10 C -0.124 4.124 11 C -0.128 4.128 12 C -0.122 4.122 13 C -0.097 4.097 14 C 0.044 3.956 15 C -0.085 4.085 16 H 0.066 0.934 17 C -0.122 4.122 18 C 0.027 3.973 19 C -0.509 4.509 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.274 1.274 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 12.947 14.893 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.203 4.203 3 C -0.026 4.026 4 H 0.088 0.912 5 C -0.211 4.211 6 N -0.242 5.242 7 C -0.048 4.048 8 C -0.065 4.065 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.116 4.116 14 C -0.082 4.082 15 C -0.103 4.103 16 H 0.084 0.916 17 C -0.180 4.180 18 C -0.010 4.010 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.199 1.199 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.029 0.971 48 H 0.032 0.968 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.022 13.170 14.610 20.885 hybrid contribution 0.295 -1.011 -0.100 1.058 sum -6.727 12.158 14.510 20.090 Atomic orbital electron populations 1.22021 0.96482 1.01465 1.01405 1.22326 0.95673 0.98695 1.03587 1.21713 0.96477 0.92378 0.92022 0.91205 1.22134 0.94922 1.01540 1.02519 1.62265 1.28809 1.28126 1.04976 1.21290 0.91949 0.92371 0.99195 1.19855 0.97893 0.95070 0.93636 1.21048 1.00824 0.98034 0.93598 1.21063 1.00353 0.93253 0.99500 1.21082 1.00589 0.97941 0.94971 1.21141 1.00411 0.98380 0.94116 1.21057 0.98065 0.92275 1.00197 1.22661 0.99684 0.93874 0.92027 1.21403 0.92493 0.96781 0.99638 0.91565 1.21590 0.99883 0.97060 0.99422 1.19124 0.96877 0.92934 0.92091 1.21236 0.93617 1.23834 1.16096 0.92638 1.25012 0.96439 0.96686 0.96395 1.69970 1.29315 1.32412 1.22031 0.86663 0.85104 0.79231 0.77420 1.20811 1.21364 1.19897 0.93323 0.92131 0.92837 0.89258 0.92040 0.92895 0.93504 0.89864 0.90341 0.93242 0.86605 0.86535 0.86584 0.86375 0.85966 0.91937 0.93132 0.94509 0.93510 0.93173 0.97107 0.96778 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.03 37.16 0.30 -1.59 16 2 C -0.16 -2.23 4.77 -26.73 -0.13 -2.35 16 3 C 0.08 1.12 2.26 -67.71 -0.15 0.96 16 4 H 0.07 0.89 5.33 -51.93 -0.28 0.61 16 5 C -0.15 -2.20 8.78 37.16 0.33 -1.87 16 6 N -0.52 -7.39 3.45 -228.08 -0.79 -8.18 16 7 C 0.08 0.99 4.65 -4.97 -0.02 0.97 16 8 C -0.06 -0.77 5.08 -104.62 -0.53 -1.30 16 9 C -0.12 -1.28 8.33 -39.58 -0.33 -1.61 16 10 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 11 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 12 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 13 C -0.10 -1.15 9.72 -39.58 -0.38 -1.53 16 14 C 0.04 0.74 3.56 -3.83 -0.01 0.73 16 15 C -0.08 -1.69 1.41 -90.62 -0.13 -1.81 16 16 H 0.07 1.34 4.37 -51.93 -0.23 1.11 16 17 C -0.12 -2.38 8.37 37.16 0.31 -2.07 16 18 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 19 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 20 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.05 0.52 7.86 -51.93 -0.41 0.11 16 28 H 0.06 0.76 4.94 -51.93 -0.26 0.51 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.45 4.91 -51.93 -0.25 1.19 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.36 4.07 -51.93 -0.21 1.15 16 35 H 0.08 0.97 7.67 -51.93 -0.40 0.58 16 36 H 0.05 0.58 5.02 -51.93 -0.26 0.32 16 37 H 0.12 1.15 7.43 -52.48 -0.39 0.76 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 43 H 0.05 0.85 3.86 -51.93 -0.20 0.65 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.83 6.98 -51.92 -0.36 0.47 16 46 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -29.38 362.67 -10.23 -39.61 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.16 Total: 1.49 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -2.46 Total: -28.90 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.05 Total: -34.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.38 -10.23 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.169 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds