Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 H 1.09002 * 109.47205 * 55.00848 * 3 2 1 5 5 C 1.53001 * 109.47027 * 175.00777 * 3 2 1 6 6 N 1.46895 * 109.46905 * 295.00685 * 3 2 1 7 7 C 1.46902 * 110.99800 * 94.02073 * 6 3 2 8 8 C 1.50701 * 109.47123 * 72.69402 * 7 6 3 9 9 C 1.38232 * 119.99605 * 265.84377 * 8 7 6 10 10 C 1.38245 * 120.00044 * 179.76696 * 9 8 7 11 11 C 1.38229 * 119.99684 * 0.50971 * 10 9 8 12 12 C 1.38245 * 120.00112 * 359.74214 * 11 10 9 13 13 C 1.38230 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.46900 * 111.00409 * 330.06377 * 6 3 2 15 15 C 1.52996 * 109.47197 * 287.17195 * 14 6 3 16 16 H 1.09002 * 109.47494 * 61.12776 * 15 14 6 17 17 C 1.53005 * 109.47221 * 301.12929 * 15 14 6 18 18 C 1.53000 * 109.47060 * 181.13266 * 15 14 6 19 19 C 1.50704 * 109.46673 * 184.99920 * 18 15 14 20 20 H 1.07994 * 120.00653 * 359.97438 * 19 18 15 21 21 C 1.37882 * 119.99697 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99800 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46872 * 90.00611 * 23 21 19 25 25 H 1.48506 * 109.47182 * 210.00270 * 23 21 19 26 26 H 1.48496 * 109.47522 * 330.00233 * 23 21 19 27 27 H 1.09004 * 109.47243 * 307.02322 * 1 2 3 28 28 H 1.09006 * 109.46858 * 67.01575 * 1 2 3 29 29 H 1.08996 * 109.47364 * 187.02047 * 1 2 3 30 30 H 1.09002 * 109.47331 * 240.00050 * 2 1 3 31 31 H 1.09002 * 109.47197 * 120.00311 * 2 1 3 32 32 H 1.08999 * 109.46641 * 186.59788 * 5 3 2 33 33 H 1.09000 * 109.47474 * 306.59633 * 5 3 2 34 34 H 1.08999 * 109.47095 * 66.59911 * 5 3 2 35 35 H 1.09006 * 109.47205 * 192.68997 * 7 6 3 36 36 H 1.08997 * 109.47158 * 312.68847 * 7 6 3 37 37 H 1.08004 * 120.00436 * 359.97438 * 9 8 7 38 38 H 1.07993 * 120.00137 * 180.22753 * 10 9 8 39 39 H 1.08002 * 120.00183 * 179.72518 * 11 10 9 40 40 H 1.07994 * 119.99980 * 179.97438 * 12 11 10 41 41 H 1.07996 * 119.99961 * 179.97438 * 13 12 11 42 42 H 1.09006 * 109.46838 * 167.17089 * 14 6 3 43 43 H 1.08996 * 109.46855 * 47.17297 * 14 6 3 44 44 H 1.09003 * 109.47287 * 300.00285 * 17 15 14 45 45 H 1.09007 * 109.47006 * 60.00088 * 17 15 14 46 46 H 1.09000 * 109.47166 * 179.97438 * 17 15 14 47 47 H 1.08995 * 109.46865 * 304.99178 * 18 15 14 48 48 H 1.08994 * 109.47300 * 64.99805 * 18 15 14 49 49 H 0.97004 * 119.99725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6056 1.9815 0.8419 5 6 3.5649 1.4442 0.1255 6 7 1.6513 2.0993 -1.2551 7 6 0.3861 2.8289 -1.0975 8 6 0.6198 4.0671 -0.2709 9 6 0.4096 4.0360 1.0950 10 6 0.6287 5.1705 1.8541 11 6 1.0478 6.3388 1.2457 12 6 1.2530 6.3713 -0.1210 13 6 1.0386 5.2356 -0.8793 14 6 1.5653 1.1274 -2.3533 15 6 2.9745 0.6960 -2.7641 16 1 3.4701 0.2201 -1.9179 17 6 3.7769 1.9236 -3.2003 18 6 2.8860 -0.2948 -3.9266 19 6 4.2635 -0.8132 -4.2507 20 1 5.1167 -0.4700 -3.6845 21 6 4.4345 -1.7257 -5.2701 22 7 3.3955 -2.1432 -5.9600 23 14 6.1419 -2.3677 -5.6723 24 1 6.4137 -3.5874 -4.8699 25 1 6.2184 -2.6991 -7.1179 26 1 7.1509 -1.3273 -5.3489 27 1 -0.3634 0.6188 0.8205 28 1 -0.3633 0.4013 -0.9461 29 1 -0.3634 -1.0199 0.1256 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9185 2.4685 0.2434 33 1 3.8586 0.8562 0.9950 34 1 4.0039 1.0093 -0.7724 35 1 0.0061 3.1136 -2.0788 36 1 -0.3419 2.1901 -0.5974 37 1 0.0774 3.1245 1.5697 38 1 0.4679 5.1452 2.9217 39 1 1.2146 7.2263 1.8380 40 1 1.5801 7.2842 -0.5964 41 1 1.1985 5.2611 -1.9471 42 1 1.0626 1.5853 -3.2052 43 1 1.0001 0.2557 -2.0235 44 1 3.2814 2.3997 -4.0465 45 1 3.8399 2.6296 -2.3721 46 1 4.7810 1.6164 -3.4926 47 1 2.2412 -1.1275 -3.6459 48 1 2.4717 0.2070 -4.8010 49 1 3.5158 -2.7849 -6.6774 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664083510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = 7.946581 kcal Electronic energy + Delta-G solvation = -24169.331385 eV Core-core repulsion = 21095.497682 eV Total energy + Delta-G solvation = -3073.833703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00714 -39.50419 -36.41201 -34.16258 -34.02788 -31.71319 -31.59080 -31.16376 -28.89181 -27.44647 -25.76606 -24.80666 -23.88589 -23.37206 -21.99868 -20.80690 -20.35776 -18.44322 -17.60297 -17.54870 -16.61787 -16.24862 -16.15730 -15.79267 -15.25605 -14.89547 -14.63069 -14.32247 -14.17847 -14.06539 -13.87832 -13.63129 -13.61247 -13.33027 -13.24511 -12.94876 -12.83376 -12.73067 -12.44905 -12.36147 -12.16581 -11.96955 -11.93830 -11.77150 -11.74960 -11.64071 -11.51832 -11.20531 -10.84128 -10.67871 -10.48323 -9.70664 -9.57402 -8.94504 -8.15315 -6.23603 0.52876 0.60396 1.40019 1.40811 1.51804 2.42944 2.83755 3.18122 3.29300 3.88785 3.95169 4.03079 4.14742 4.21772 4.24318 4.28140 4.35609 4.39547 4.52432 4.57026 4.65093 4.68304 4.72967 4.78539 4.81221 4.88832 4.92782 4.94482 5.02166 5.06148 5.08664 5.16643 5.22462 5.26172 5.30777 5.35113 5.42008 5.49103 5.54388 5.61857 5.65368 5.66583 5.71249 5.82883 5.88692 5.98964 6.19785 6.25689 6.37237 6.39957 6.92649 7.44300 8.96610 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.003760 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.601039 B = 7444.694134 C = 7841.128990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.162 4.162 3 C 0.085 3.915 4 H 0.087 0.913 5 C -0.151 4.151 6 N -0.520 5.520 7 C 0.082 3.918 8 C -0.078 4.078 9 C -0.123 4.123 10 C -0.127 4.127 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.115 4.115 14 C 0.057 3.943 15 C -0.073 4.073 16 H 0.068 0.932 17 C -0.110 4.110 18 C 0.035 3.965 19 C -0.524 4.524 20 H 0.058 0.942 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.066 0.934 46 H 0.031 0.969 47 H -0.015 1.015 48 H -0.015 1.015 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 14.071 17.151 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.023 4.023 4 H 0.105 0.895 5 C -0.209 4.209 6 N -0.243 5.243 7 C -0.045 4.045 8 C -0.078 4.078 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.148 4.148 13 C -0.134 4.134 14 C -0.070 4.070 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.167 4.167 18 C -0.003 4.003 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.782 3.218 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.189 1.189 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.646 14.307 16.883 23.106 hybrid contribution 0.145 -1.310 -0.759 1.521 sum -6.500 12.997 16.124 21.706 Atomic orbital electron populations 1.21981 0.95234 1.02104 1.01680 1.22266 0.96793 0.98412 1.02569 1.21743 0.96089 0.92471 0.91996 0.89500 1.22091 0.95317 1.01513 1.01938 1.62165 1.30284 1.27230 1.04668 1.21281 0.91075 0.92689 0.99435 1.19818 0.99142 0.94664 0.94188 1.21218 1.00795 0.99002 0.93167 1.21387 0.99491 0.92863 1.00701 1.21425 0.99600 0.98874 0.94886 1.21388 1.00159 0.98550 0.94664 1.21163 0.98963 0.93014 1.00263 1.22355 0.97203 0.94539 0.92902 1.21197 0.94828 0.95667 0.97429 0.91452 1.21463 0.98451 0.97021 0.99788 1.18997 0.95211 0.93066 0.92995 1.21623 0.94653 1.23833 1.16112 0.92347 1.25911 1.00596 0.97023 0.96318 1.70104 1.31676 1.33158 1.22674 0.85568 0.80144 0.78858 0.77231 1.19898 1.21004 1.18877 0.91296 0.93068 0.92525 0.92409 0.90891 0.92894 0.92009 0.92299 0.90838 0.92225 0.85515 0.84252 0.84260 0.84854 0.86553 0.92777 0.93140 0.95164 0.91551 0.95013 0.99670 0.99672 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.03 71.98 0.58 -2.87 16 2 C -0.16 -4.22 4.77 30.59 0.15 -4.07 16 3 C 0.09 2.17 2.26 44.92 0.10 2.27 16 4 H 0.09 1.97 5.33 -2.39 -0.01 1.96 16 5 C -0.15 -4.11 8.78 71.98 0.63 -3.48 16 6 N -0.52 -14.50 3.45 -875.52 -3.02 -17.52 16 7 C 0.08 1.97 4.65 85.56 0.40 2.37 16 8 C -0.08 -1.74 5.08 -19.87 -0.10 -1.84 16 9 C -0.12 -2.40 8.33 22.27 0.19 -2.21 16 10 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 11 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 12 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 13 C -0.12 -2.60 9.72 22.27 0.22 -2.38 16 14 C 0.06 1.96 3.56 86.30 0.31 2.27 16 15 C -0.07 -2.98 1.41 -10.79 -0.02 -3.00 16 16 H 0.07 2.78 4.37 -2.39 -0.01 2.77 16 17 C -0.11 -4.34 8.37 71.98 0.60 -3.74 16 18 C 0.03 1.84 4.45 29.85 0.13 1.98 16 19 C -0.52 -29.90 8.41 25.60 0.22 -29.68 16 20 H 0.06 3.23 7.05 -2.91 -0.02 3.21 16 21 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 22 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 23 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H 0.07 1.27 7.86 -2.39 -0.02 1.25 16 28 H 0.05 1.25 4.94 -2.38 -0.01 1.24 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.89 4.91 -2.39 -0.01 1.88 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.90 4.07 -2.39 -0.01 1.89 16 35 H 0.07 1.82 7.67 -2.38 -0.02 1.80 16 36 H 0.06 1.31 5.02 -2.39 -0.01 1.29 16 37 H 0.13 2.12 7.43 -2.91 -0.02 2.10 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.05 1.92 7.70 -2.38 -0.02 1.90 16 43 H 0.05 1.74 3.86 -2.39 -0.01 1.73 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.07 2.34 6.98 -2.38 -0.02 2.32 16 46 H 0.03 1.34 6.95 -2.39 -0.02 1.32 16 47 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 48 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -63.99 362.67 4.73 -59.25 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.91 Total: 18.75 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 4.53 Total: -50.18 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.74 Total: -74.87 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.99 4.73 -59.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.199 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds