Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47220 * 52.69086 * 3 2 1 5 5 C 1.52999 * 109.47302 * 172.68682 * 3 2 1 6 6 N 1.46899 * 109.47305 * 292.68824 * 3 2 1 7 7 C 1.46903 * 111.00218 * 145.67745 * 6 3 2 8 8 C 1.50693 * 109.47370 * 287.76075 * 7 6 3 9 9 C 1.38231 * 120.00210 * 275.57153 * 8 7 6 10 10 C 1.38236 * 120.00088 * 179.76386 * 9 8 7 11 11 C 1.38231 * 119.99881 * 0.51213 * 10 9 8 12 12 C 1.38235 * 120.00158 * 359.74367 * 11 10 9 13 13 C 1.38236 * 119.99898 * 359.97438 * 12 11 10 14 14 C 1.46894 * 111.00101 * 269.63606 * 6 3 2 15 15 C 1.53001 * 109.47273 * 73.74416 * 14 6 3 16 16 H 1.09002 * 109.46884 * 298.65681 * 15 14 6 17 17 C 1.53005 * 109.47230 * 58.65292 * 15 14 6 18 18 C 1.53002 * 109.47286 * 178.65589 * 15 14 6 19 19 C 1.50703 * 109.47030 * 174.99853 * 18 15 14 20 20 H 1.08004 * 119.99813 * 0.02562 * 19 18 15 21 21 C 1.37871 * 119.99868 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46966 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46952 * 120.00243 * 23 21 19 26 26 H 1.48503 * 109.47239 * 240.00260 * 23 21 19 27 27 H 1.09000 * 109.46871 * 64.10706 * 1 2 3 28 28 H 1.08996 * 109.47261 * 184.11202 * 1 2 3 29 29 H 1.08997 * 109.47004 * 304.11402 * 1 2 3 30 30 H 1.08997 * 109.47306 * 239.99713 * 2 1 3 31 31 H 1.09003 * 109.47076 * 120.00242 * 2 1 3 32 32 H 1.09003 * 109.47202 * 179.31581 * 5 3 2 33 33 H 1.08998 * 109.47600 * 299.32504 * 5 3 2 34 34 H 1.09001 * 109.46634 * 59.32568 * 5 3 2 35 35 H 1.08998 * 109.46900 * 47.76535 * 7 6 3 36 36 H 1.09004 * 109.46907 * 167.75745 * 7 6 3 37 37 H 1.08001 * 119.99992 * 0.02562 * 9 8 7 38 38 H 1.08005 * 120.00161 * 180.23055 * 10 9 8 39 39 H 1.08002 * 119.99944 * 179.72154 * 11 10 9 40 40 H 1.07997 * 120.00263 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.00081 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47512 * 313.74170 * 14 6 3 43 43 H 1.09003 * 109.47512 * 193.74178 * 14 6 3 44 44 H 1.09002 * 109.46870 * 60.00380 * 17 15 14 45 45 H 1.08998 * 109.47242 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.46867 * 300.00261 * 17 15 14 47 47 H 1.09003 * 109.47088 * 294.99635 * 18 15 14 48 48 H 1.08994 * 109.46936 * 54.99834 * 18 15 14 49 49 H 0.97006 * 120.00201 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5739 1.9927 0.8174 5 6 3.5590 1.4463 0.1836 6 7 1.6997 2.0822 -1.2778 7 6 1.3983 3.5076 -1.0891 8 6 0.0645 3.6525 -0.4031 9 6 -1.1011 3.6290 -1.1459 10 6 -2.3249 3.7571 -0.5160 11 6 -2.3826 3.9193 0.8555 12 6 -1.2169 3.9482 1.5978 13 6 0.0067 3.8142 0.9686 14 6 2.7743 1.8971 -2.2620 15 6 2.7656 0.4506 -2.7606 16 1 2.9467 -0.2234 -1.9234 17 6 1.4049 0.1345 -3.3848 18 6 3.8634 0.2664 -3.8104 19 6 3.9362 -1.1843 -4.2117 20 1 3.2662 -1.9030 -3.7633 21 6 4.8574 -1.5940 -5.1522 22 7 5.6729 -0.7188 -5.6986 23 14 4.9483 -3.3924 -5.6492 24 1 3.9310 -4.1667 -4.8937 25 1 4.6841 -3.5175 -7.1052 26 1 6.3015 -3.9225 -5.3443 27 1 -0.3633 0.4488 -0.9245 28 1 -0.3633 -1.0250 0.0737 29 1 -0.3633 0.5763 0.8508 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9238 2.4734 0.1714 33 1 3.8110 0.9825 1.1372 34 1 4.0243 0.8859 -0.6273 35 1 2.1743 3.9648 -0.4752 36 1 1.3637 4.0031 -2.0594 37 1 -1.0558 3.5063 -2.2180 38 1 -3.2357 3.7350 -1.0960 39 1 -3.3386 4.0239 1.3471 40 1 -1.2619 4.0753 2.6693 41 1 0.9175 3.8372 1.5485 42 1 3.7353 2.1150 -1.7960 43 1 2.6170 2.5723 -3.1031 44 1 1.2238 0.8085 -4.2220 45 1 1.3985 -0.8961 -3.7396 46 1 0.6229 0.2657 -2.6369 47 1 3.6348 0.8745 -4.6857 48 1 4.8212 0.5764 -3.3926 49 1 6.3208 -1.0069 -6.3606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664083511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = 14.546873 kcal Electronic energy + Delta-G solvation = -24236.167265 eV Core-core repulsion = 21162.619772 eV Total energy + Delta-G solvation = -3073.547493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79424 -38.39042 -34.59620 -33.33865 -32.18237 -31.02406 -30.90312 -29.10218 -26.96431 -25.96369 -24.78952 -23.40909 -22.62712 -22.25564 -21.18625 -19.30876 -18.88297 -16.72679 -16.32171 -16.00542 -15.38600 -15.16494 -14.71318 -14.36413 -14.12730 -13.63445 -13.44491 -13.37918 -13.15301 -12.90183 -12.62171 -12.50005 -12.18463 -12.02028 -11.78909 -11.36486 -11.32437 -11.13507 -11.07575 -10.92969 -10.83572 -10.75226 -10.60759 -10.56293 -10.25936 -10.16431 -10.09883 -9.39648 -8.99093 -8.91703 -8.85874 -8.70775 -8.29542 -7.85176 -5.94829 -3.95334 1.34262 1.40425 3.33614 3.41384 3.45500 3.72185 4.33691 4.51429 4.80247 4.84859 4.97475 5.07852 5.09035 5.25400 5.39081 5.41306 5.48267 5.52830 5.61530 5.65207 5.71911 5.75041 5.82177 5.96323 6.00452 6.01427 6.04297 6.06253 6.24712 6.26130 6.34300 6.41328 6.42791 6.46643 6.49516 6.53240 6.66352 6.68228 6.75509 6.91894 6.99590 7.17482 7.27689 7.31745 7.47865 7.55438 7.74378 7.91215 8.06450 8.50932 9.11569 9.68037 11.16722 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.003681 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.651516 B = 7604.000197 C = 7636.322631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.187 4.187 6 N -0.519 5.519 7 C 0.088 3.912 8 C -0.063 4.063 9 C -0.096 4.096 10 C -0.122 4.122 11 C -0.127 4.127 12 C -0.123 4.123 13 C -0.116 4.116 14 C 0.050 3.950 15 C -0.083 4.083 16 H 0.065 0.935 17 C -0.125 4.125 18 C 0.027 3.973 19 C -0.508 4.508 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.014 0.986 48 H 0.010 0.990 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 9.746 14.032 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.027 4.027 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.242 5.242 7 C -0.039 4.039 8 C -0.064 4.064 9 C -0.114 4.114 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.077 4.077 15 C -0.101 4.101 16 H 0.083 0.917 17 C -0.182 4.182 18 C -0.011 4.011 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.715 3.285 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.212 1.212 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.987 9.536 13.712 21.157 hybrid contribution 0.924 -0.565 -0.025 1.083 sum -12.062 8.971 13.687 20.331 Atomic orbital electron populations 1.21624 0.95877 0.99990 1.01895 1.21857 0.96270 0.95609 1.02602 1.21735 0.93498 0.96071 0.91348 0.91195 1.22516 0.97773 1.01526 1.02685 1.62231 1.42572 1.10489 1.08893 1.21083 0.92528 0.90505 0.99799 1.19810 0.95251 0.97998 0.93302 1.21034 0.91735 0.98515 1.00152 1.21133 0.97738 1.00419 0.94715 1.21073 0.98018 1.01117 0.94292 1.21052 0.92646 1.00939 0.99510 1.21038 0.97582 1.00626 0.94207 1.22543 0.91812 0.99745 0.93620 1.21372 0.97241 0.92558 0.98962 0.91671 1.21636 0.96599 1.00756 0.99185 1.19133 0.92303 0.96712 0.92936 1.21272 1.17429 0.93888 1.22097 0.92576 1.25009 0.95855 0.97176 0.96507 1.69975 1.21466 1.33552 1.28745 0.86614 0.77772 0.85777 0.78315 1.19745 1.21145 1.21171 0.91505 0.94081 0.94206 0.89287 0.93036 0.93345 0.92771 0.90220 0.94407 0.90148 0.85967 0.86402 0.86627 0.86582 0.86669 0.93898 0.91852 0.94552 0.93200 0.93170 0.96775 0.97116 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.58 37.16 0.36 -1.48 16 2 C -0.13 -1.78 5.01 -26.73 -0.13 -1.91 16 3 C 0.08 1.10 2.01 -67.72 -0.14 0.96 16 4 H 0.07 0.89 5.44 -51.93 -0.28 0.60 16 5 C -0.19 -2.55 7.81 37.16 0.29 -2.26 16 6 N -0.52 -7.28 3.09 -228.09 -0.71 -7.98 16 7 C 0.09 1.09 5.06 -4.98 -0.03 1.07 16 8 C -0.06 -0.74 5.03 -104.63 -0.53 -1.26 16 9 C -0.10 -1.10 9.72 -39.58 -0.38 -1.48 16 10 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 11 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 12 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 13 C -0.12 -1.25 8.32 -39.58 -0.33 -1.58 16 14 C 0.05 0.83 3.94 -3.83 -0.02 0.81 16 15 C -0.08 -1.64 1.45 -90.62 -0.13 -1.77 16 16 H 0.07 1.32 4.36 -51.93 -0.23 1.09 16 17 C -0.12 -2.39 8.40 37.16 0.31 -2.08 16 18 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 19 C -0.51 -14.14 8.41 -34.44 -0.29 -14.43 16 20 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 23 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H 0.07 0.98 6.48 -51.93 -0.34 0.64 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.46 4.13 -51.93 -0.21 1.25 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.63 7.81 -51.93 -0.41 0.22 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.28 5.25 -51.93 -0.27 1.01 16 35 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 36 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.14 7.55 -52.49 -0.40 0.74 16 42 H 0.04 0.73 5.34 -51.93 -0.28 0.45 16 43 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 46 H 0.05 0.87 5.41 -51.93 -0.28 0.59 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -29.21 368.60 -10.28 -39.49 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.42 Total: 0.72 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -2.43 Total: -28.28 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.03 Total: -34.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.21 -10.28 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.036 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds