Wall clock time and date at job start Tue Mar 31 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47220 * 52.69086 * 3 2 1 5 5 C 1.52999 * 109.47302 * 172.68682 * 3 2 1 6 6 N 1.46899 * 109.47305 * 292.68824 * 3 2 1 7 7 C 1.46903 * 111.00218 * 145.67745 * 6 3 2 8 8 C 1.50693 * 109.47370 * 287.76075 * 7 6 3 9 9 C 1.38231 * 120.00210 * 275.57153 * 8 7 6 10 10 C 1.38236 * 120.00088 * 179.76386 * 9 8 7 11 11 C 1.38231 * 119.99881 * 0.51213 * 10 9 8 12 12 C 1.38235 * 120.00158 * 359.74367 * 11 10 9 13 13 C 1.38236 * 119.99898 * 359.97438 * 12 11 10 14 14 C 1.46894 * 111.00101 * 269.63606 * 6 3 2 15 15 C 1.53001 * 109.47273 * 73.74416 * 14 6 3 16 16 H 1.09002 * 109.46884 * 298.65681 * 15 14 6 17 17 C 1.53005 * 109.47230 * 58.65292 * 15 14 6 18 18 C 1.53002 * 109.47286 * 178.65589 * 15 14 6 19 19 C 1.50703 * 109.47030 * 174.99853 * 18 15 14 20 20 H 1.08004 * 119.99813 * 0.02562 * 19 18 15 21 21 C 1.37871 * 119.99868 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46966 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46952 * 120.00243 * 23 21 19 26 26 H 1.48503 * 109.47239 * 240.00260 * 23 21 19 27 27 H 1.09000 * 109.46871 * 64.10706 * 1 2 3 28 28 H 1.08996 * 109.47261 * 184.11202 * 1 2 3 29 29 H 1.08997 * 109.47004 * 304.11402 * 1 2 3 30 30 H 1.08997 * 109.47306 * 239.99713 * 2 1 3 31 31 H 1.09003 * 109.47076 * 120.00242 * 2 1 3 32 32 H 1.09003 * 109.47202 * 179.31581 * 5 3 2 33 33 H 1.08998 * 109.47600 * 299.32504 * 5 3 2 34 34 H 1.09001 * 109.46634 * 59.32568 * 5 3 2 35 35 H 1.08998 * 109.46900 * 47.76535 * 7 6 3 36 36 H 1.09004 * 109.46907 * 167.75745 * 7 6 3 37 37 H 1.08001 * 119.99992 * 0.02562 * 9 8 7 38 38 H 1.08005 * 120.00161 * 180.23055 * 10 9 8 39 39 H 1.08002 * 119.99944 * 179.72154 * 11 10 9 40 40 H 1.07997 * 120.00263 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.00081 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47512 * 313.74170 * 14 6 3 43 43 H 1.09003 * 109.47512 * 193.74178 * 14 6 3 44 44 H 1.09002 * 109.46870 * 60.00380 * 17 15 14 45 45 H 1.08998 * 109.47242 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.46867 * 300.00261 * 17 15 14 47 47 H 1.09003 * 109.47088 * 294.99635 * 18 15 14 48 48 H 1.08994 * 109.46936 * 54.99834 * 18 15 14 49 49 H 0.97006 * 120.00201 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5739 1.9927 0.8174 5 6 3.5590 1.4463 0.1836 6 7 1.6997 2.0822 -1.2778 7 6 1.3983 3.5076 -1.0891 8 6 0.0645 3.6525 -0.4031 9 6 -1.1011 3.6290 -1.1459 10 6 -2.3249 3.7571 -0.5160 11 6 -2.3826 3.9193 0.8555 12 6 -1.2169 3.9482 1.5978 13 6 0.0067 3.8142 0.9686 14 6 2.7743 1.8971 -2.2620 15 6 2.7656 0.4506 -2.7606 16 1 2.9467 -0.2234 -1.9234 17 6 1.4049 0.1345 -3.3848 18 6 3.8634 0.2664 -3.8104 19 6 3.9362 -1.1843 -4.2117 20 1 3.2662 -1.9030 -3.7633 21 6 4.8574 -1.5940 -5.1522 22 7 5.6729 -0.7188 -5.6986 23 14 4.9483 -3.3924 -5.6492 24 1 3.9310 -4.1667 -4.8937 25 1 4.6841 -3.5175 -7.1052 26 1 6.3015 -3.9225 -5.3443 27 1 -0.3633 0.4488 -0.9245 28 1 -0.3633 -1.0250 0.0737 29 1 -0.3633 0.5763 0.8508 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.9238 2.4734 0.1714 33 1 3.8110 0.9825 1.1372 34 1 4.0243 0.8859 -0.6273 35 1 2.1743 3.9648 -0.4752 36 1 1.3637 4.0031 -2.0594 37 1 -1.0558 3.5063 -2.2180 38 1 -3.2357 3.7350 -1.0960 39 1 -3.3386 4.0239 1.3471 40 1 -1.2619 4.0753 2.6693 41 1 0.9175 3.8372 1.5485 42 1 3.7353 2.1150 -1.7960 43 1 2.6170 2.5723 -3.1031 44 1 1.2238 0.8085 -4.2220 45 1 1.3985 -0.8961 -3.7396 46 1 0.6229 0.2657 -2.6369 47 1 3.6348 0.8745 -4.6857 48 1 4.8212 0.5764 -3.3926 49 1 6.3208 -1.0069 -6.3606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664083511.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:35 Heat of formation + Delta-G solvation = 1.583785 kcal Electronic energy + Delta-G solvation = -24236.729387 eV Core-core repulsion = 21162.619772 eV Total energy + Delta-G solvation = -3074.109615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81921 -39.40532 -36.32683 -34.37428 -34.13413 -32.12733 -31.67927 -30.22700 -28.85478 -27.35081 -25.94117 -25.01895 -23.75210 -23.35786 -22.06512 -20.67188 -20.32764 -18.39102 -17.55727 -17.26906 -16.57911 -16.25451 -16.07982 -15.69024 -15.24606 -15.01336 -14.60752 -14.41923 -14.35342 -14.15071 -14.06308 -13.71463 -13.46880 -13.20551 -13.15586 -12.86520 -12.77729 -12.64407 -12.52577 -12.31288 -12.23469 -11.99753 -11.81656 -11.80576 -11.75123 -11.68820 -11.37815 -11.19685 -10.83911 -10.62047 -10.47711 -9.68681 -9.55750 -9.01953 -8.15419 -6.23606 0.54334 0.62161 1.39407 1.40254 1.52959 2.42882 2.84156 3.18170 3.28806 3.89589 3.96470 4.03376 4.18993 4.25788 4.27297 4.36659 4.38386 4.41203 4.56525 4.62226 4.63123 4.66870 4.72713 4.79826 4.83657 4.89117 4.90188 4.95481 5.02497 5.09188 5.18598 5.22364 5.27073 5.28335 5.32612 5.35821 5.48489 5.55302 5.56026 5.65905 5.67219 5.72679 5.73455 5.84021 5.89787 5.99263 6.20143 6.25658 6.36080 6.39510 6.92926 7.44426 8.96732 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.003681 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.651516 B = 7604.000197 C = 7636.322631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 C 0.085 3.915 4 H 0.086 0.914 5 C -0.182 4.182 6 N -0.518 5.518 7 C 0.090 3.910 8 C -0.074 4.074 9 C -0.111 4.111 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.126 4.126 13 C -0.123 4.123 14 C 0.062 3.938 15 C -0.070 4.070 16 H 0.066 0.934 17 C -0.112 4.112 18 C 0.034 3.966 19 C -0.522 4.522 20 H 0.058 0.942 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.280 1.280 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.071 0.929 47 H -0.015 1.015 48 H -0.016 1.016 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 9.521 15.995 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C -0.023 4.023 4 H 0.104 0.896 5 C -0.241 4.241 6 N -0.241 5.241 7 C -0.037 4.037 8 C -0.075 4.075 9 C -0.130 4.130 10 C -0.146 4.146 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.142 4.142 14 C -0.066 4.066 15 C -0.089 4.089 16 H 0.084 0.916 17 C -0.170 4.170 18 C -0.004 4.004 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.782 3.218 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.206 1.206 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.004 0.996 48 H 0.003 0.997 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.636 9.315 15.687 23.390 hybrid contribution 1.398 -0.441 -0.593 1.581 sum -13.239 8.874 15.094 21.951 Atomic orbital electron populations 1.21526 0.95126 1.00326 1.01510 1.21833 0.96855 0.95785 1.01879 1.21761 0.93384 0.95881 0.91311 0.89560 1.22453 0.97720 1.01573 1.02325 1.62137 1.40994 1.12092 1.08853 1.21082 0.93480 0.89064 1.00060 1.19733 0.94590 0.99318 0.93854 1.21118 0.92408 0.99360 1.00099 1.21368 0.97840 1.00029 0.95394 1.21400 0.99116 1.00031 0.94092 1.21354 0.92259 1.00053 1.00725 1.21189 0.98525 1.00624 0.93814 1.22239 0.92804 0.97239 0.94277 1.21154 0.95505 0.94912 0.97298 0.91623 1.21516 0.96806 0.99232 0.99412 1.19014 0.92970 0.95157 0.93238 1.21649 1.17290 0.95060 1.22047 0.92334 1.25907 0.95511 1.01876 0.96585 1.70106 1.22262 1.35829 1.29466 0.85521 0.78084 0.80186 0.78018 1.18634 1.20653 1.20565 0.92865 0.93594 0.93277 0.91843 0.91860 0.92733 0.91254 0.93091 0.93700 0.90473 0.86546 0.84916 0.84378 0.84428 0.85798 0.94197 0.92494 0.95194 0.95108 0.90988 0.99619 0.99742 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.58 71.98 0.69 -2.48 16 2 C -0.13 -3.37 5.01 30.59 0.15 -3.22 16 3 C 0.08 2.15 2.01 44.91 0.09 2.24 16 4 H 0.09 1.96 5.44 -2.39 -0.01 1.95 16 5 C -0.18 -4.81 7.81 71.98 0.56 -4.24 16 6 N -0.52 -14.19 3.09 -875.55 -2.71 -16.90 16 7 C 0.09 2.15 5.06 85.55 0.43 2.58 16 8 C -0.07 -1.62 5.03 -19.87 -0.10 -1.72 16 9 C -0.11 -2.41 9.72 22.27 0.22 -2.20 16 10 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 11 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 12 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 13 C -0.12 -2.35 8.32 22.27 0.19 -2.17 16 14 C 0.06 2.11 3.94 86.30 0.34 2.45 16 15 C -0.07 -2.86 1.45 -10.79 -0.02 -2.87 16 16 H 0.07 2.71 4.36 -2.39 -0.01 2.70 16 17 C -0.11 -4.38 8.40 71.98 0.60 -3.78 16 18 C 0.03 1.78 4.45 29.85 0.13 1.92 16 19 C -0.52 -29.76 8.41 25.60 0.22 -29.54 16 20 H 0.06 3.24 7.06 -2.91 -0.02 3.22 16 21 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 22 N -0.94 -57.65 13.29 21.44 0.28 -57.37 16 23 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 H 0.05 1.47 6.48 -2.39 -0.02 1.45 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 2.05 4.13 -2.39 -0.01 2.04 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.35 7.81 -2.39 -0.02 1.33 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.64 5.25 -2.39 -0.01 1.63 16 35 H 0.04 1.00 7.91 -2.39 -0.02 0.99 16 36 H 0.08 1.87 7.68 -2.38 -0.02 1.85 16 37 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.12 2.10 7.55 -2.91 -0.02 2.08 16 42 H 0.04 1.38 5.34 -2.39 -0.01 1.37 16 43 H 0.06 2.00 7.69 -2.39 -0.02 1.98 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.03 1.28 6.95 -2.39 -0.02 1.27 16 46 H 0.07 2.47 5.41 -2.39 -0.01 2.46 16 47 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -63.46 368.60 5.14 -58.32 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.90 Total: 17.49 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 4.64 Total: -48.60 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.42 Total: -74.27 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.46 5.14 -58.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664083511.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.901 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds