Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.34972 * 116.99865 * 2 1 4 4 O 1.21704 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.41540 * 120.00444 * 180.02562 * 3 2 1 6 6 S 1.76186 * 126.12409 * 180.02562 * 5 3 2 7 7 C 1.70901 * 90.44537 * 179.97438 * 6 5 3 8 8 N 1.37779 * 124.71974 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.46496 * 120.00541 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47260 * 89.99787 * 10 8 7 12 12 H 1.07997 * 120.00406 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00247 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99510 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 120.00246 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47401 * 59.99842 * 15 13 11 17 17 H 1.48506 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47226 * 299.99730 * 15 13 11 19 19 N 1.30254 * 110.56873 * 359.77427 * 7 6 5 20 20 C 1.30906 * 117.27813 * 0.42541 * 19 7 6 21 21 Cl 1.73599 * 123.02903 * 179.83179 * 20 19 7 22 22 H 1.09002 * 109.47386 * 59.99987 * 1 2 3 23 23 H 1.09006 * 109.46714 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47189 * 299.99799 * 1 2 3 25 25 H 1.09005 * 109.46602 * 89.99939 * 9 8 7 26 26 H 1.08994 * 109.47348 * 209.99907 * 9 8 7 27 27 H 1.08999 * 109.46611 * 330.00283 * 9 8 7 28 28 H 1.08997 * 109.47319 * 210.00068 * 10 8 7 29 29 H 1.09005 * 109.46963 * 329.99777 * 10 8 7 30 30 H 0.97003 * 119.99518 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3788 2.2233 -0.0005 5 6 3.4551 1.2768 -0.0005 6 16 4.4178 2.7525 0.0000 7 6 5.8563 1.8299 -0.0004 8 7 7.1283 2.3595 -0.0008 9 6 7.3168 3.8124 -0.0014 10 6 8.2923 1.4700 -0.0017 11 6 8.6907 1.1656 -1.4228 12 1 8.1330 1.5923 -2.2433 13 6 9.7674 0.3421 -1.6757 14 7 10.4462 -0.1780 -0.6765 15 14 10.2617 -0.0347 -3.4371 16 1 10.6052 1.2297 -4.1362 17 1 11.4408 -0.9375 -3.4380 18 1 9.1318 -0.6964 -4.1376 19 7 5.5832 0.5563 0.0039 20 6 4.3198 0.2136 -0.0010 21 17 3.7876 -1.4387 -0.0006 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 7.3636 4.1731 1.0262 26 1 8.2460 4.0581 -0.5154 27 1 6.4808 4.2870 -0.5153 28 1 9.1216 1.9562 0.5119 29 1 8.0408 0.5420 0.5119 30 1 11.2034 -0.7576 -0.8544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037473387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -32.557003 kcal Electronic energy + Delta-G solvation = -18375.355770 eV Core-core repulsion = 15131.327431 eV Total energy + Delta-G solvation = -3244.028338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30358 -39.34984 -36.87510 -36.27954 -35.92636 -32.84135 -30.60186 -28.32569 -27.54768 -26.47098 -24.25805 -22.69232 -21.72235 -19.64905 -18.27809 -17.50784 -16.73549 -16.33738 -16.29989 -15.44354 -15.07889 -14.95995 -14.49181 -13.88086 -13.70297 -13.22524 -12.97868 -12.48015 -12.26166 -12.05837 -11.69172 -11.58716 -11.44754 -11.10330 -10.76947 -10.66992 -10.58835 -10.56241 -10.29986 -10.09873 -9.39147 -9.21759 -8.95348 -8.60432 -7.25113 -6.21274 -4.29374 0.54058 1.13184 1.46965 2.30584 2.63707 3.15893 3.22729 3.28022 3.30129 3.31981 3.51132 4.30145 4.99790 5.11779 5.14451 5.19026 5.24950 5.28316 5.50857 5.54004 5.78351 5.84728 6.40274 6.55461 7.07773 7.22850 7.51841 7.72418 7.94563 7.98432 8.06955 8.72416 9.36433 10.85274 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.005072 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.570202 B = 5518.719516 C = 6301.777965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.340 6.340 3 C 0.560 3.440 4 O -0.532 6.532 5 C -0.391 4.391 6 S 0.178 5.822 7 C 0.363 3.637 8 N -0.526 5.526 9 C 0.080 3.920 10 C 0.246 3.754 11 C -0.535 4.535 12 H 0.059 0.941 13 C 0.068 3.932 14 N -0.890 5.890 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.546 5.546 20 C 0.285 3.715 21 Cl 0.014 6.986 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.615 3.643 2.602 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.408 3.592 4 O -0.424 6.424 5 C -0.517 4.517 6 S 0.427 5.573 7 C -0.007 4.007 8 N -0.235 5.235 9 C -0.063 4.063 10 C 0.126 3.874 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.200 1.200 19 N -0.272 5.272 20 C 0.111 3.889 21 Cl 0.043 6.957 22 H 0.076 0.924 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.140 4.559 2.667 13.239 hybrid contribution -0.058 -1.414 -1.033 1.752 sum -12.198 3.146 1.634 12.703 Atomic orbital electron populations 1.22824 0.77628 1.03185 1.02081 1.86336 1.22460 1.32053 1.84821 1.17861 0.86728 0.81695 0.72955 1.90860 1.66927 1.35457 1.49178 1.22541 0.95415 0.95659 1.38075 1.83693 0.93713 1.05643 1.74287 1.23654 0.92633 0.90907 0.93457 1.47117 1.02100 1.07271 1.66988 1.21986 1.03861 0.78223 1.02220 1.19738 0.79728 0.89384 0.98529 1.21264 1.14012 1.30624 0.91505 0.92259 1.24891 0.95885 0.95104 0.97694 1.69907 1.19898 1.32001 1.30969 0.86509 0.78113 0.78369 0.84205 1.20143 1.21007 1.20015 1.65621 1.17828 1.14805 1.28935 1.20904 0.87431 0.88283 0.92304 1.98405 1.87730 1.13790 1.95766 0.92444 0.88376 0.92462 0.91679 0.88523 0.91715 0.93815 0.92596 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.45 101.05 1.06 1.46 16 2 O -0.34 -5.05 8.24 -41.24 -0.34 -5.39 16 3 C 0.56 9.63 7.72 31.99 0.25 9.87 16 4 O -0.53 -9.85 16.64 -19.42 -0.32 -10.18 16 5 C -0.39 -7.00 6.32 -38.76 -0.24 -7.25 16 6 S 0.18 2.89 21.36 -107.50 -2.30 0.60 16 7 C 0.36 6.98 7.71 -88.02 -0.68 6.31 16 8 N -0.53 -10.07 2.94 -185.45 -0.54 -10.61 16 9 C 0.08 1.11 10.39 59.85 0.62 1.74 16 10 C 0.25 5.77 5.27 -5.20 -0.03 5.75 16 11 C -0.54 -13.93 9.39 -34.44 -0.32 -14.25 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 15 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 N -0.55 -11.55 9.72 -11.82 -0.11 -11.66 16 20 C 0.29 5.41 7.41 -18.38 -0.14 5.27 16 21 Cl 0.01 0.24 27.10 -51.86 -1.41 -1.16 16 22 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 27 H 0.06 0.77 7.01 -51.93 -0.36 0.41 16 28 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 29 H 0.06 1.47 7.59 -51.93 -0.39 1.08 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -30.35 299.65 -7.21 -37.56 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -2.83 Total: -6.02 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 0.42 Total: 10.61 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.08 Total: -46.30 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.66 Total: -15.56 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.30 Total: 0.60 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.41 Total: -1.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.35 -7.21 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037473387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.004 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds