Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.34972 * 116.99865 * 2 1 4 4 O 1.21704 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.41540 * 120.00444 * 180.02562 * 3 2 1 6 6 S 1.76186 * 126.12409 * 180.02562 * 5 3 2 7 7 C 1.70901 * 90.44537 * 179.97438 * 6 5 3 8 8 N 1.37779 * 124.71974 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.46496 * 120.00541 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47260 * 89.99787 * 10 8 7 12 12 H 1.07997 * 120.00406 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00247 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99510 * 0.02562 * 13 11 10 15 15 Si 1.86790 * 120.00246 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47401 * 59.99842 * 15 13 11 17 17 H 1.48506 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47226 * 299.99730 * 15 13 11 19 19 N 1.30254 * 110.56873 * 359.77427 * 7 6 5 20 20 C 1.30906 * 117.27813 * 0.42541 * 19 7 6 21 21 Cl 1.73599 * 123.02903 * 179.83179 * 20 19 7 22 22 H 1.09002 * 109.47386 * 59.99987 * 1 2 3 23 23 H 1.09006 * 109.46714 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47189 * 299.99799 * 1 2 3 25 25 H 1.09005 * 109.46602 * 89.99939 * 9 8 7 26 26 H 1.08994 * 109.47348 * 209.99907 * 9 8 7 27 27 H 1.08999 * 109.46611 * 330.00283 * 9 8 7 28 28 H 1.08997 * 109.47319 * 210.00068 * 10 8 7 29 29 H 1.09005 * 109.46963 * 329.99777 * 10 8 7 30 30 H 0.97003 * 119.99518 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3788 2.2233 -0.0005 5 6 3.4551 1.2768 -0.0005 6 16 4.4178 2.7525 0.0000 7 6 5.8563 1.8299 -0.0004 8 7 7.1283 2.3595 -0.0008 9 6 7.3168 3.8124 -0.0014 10 6 8.2923 1.4700 -0.0017 11 6 8.6907 1.1656 -1.4228 12 1 8.1330 1.5923 -2.2433 13 6 9.7674 0.3421 -1.6757 14 7 10.4462 -0.1780 -0.6765 15 14 10.2617 -0.0347 -3.4371 16 1 10.6052 1.2297 -4.1362 17 1 11.4408 -0.9375 -3.4380 18 1 9.1318 -0.6964 -4.1376 19 7 5.5832 0.5563 0.0039 20 6 4.3198 0.2136 -0.0010 21 17 3.7876 -1.4387 -0.0006 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 7.3636 4.1731 1.0262 26 1 8.2460 4.0581 -0.5154 27 1 6.4808 4.2870 -0.5153 28 1 9.1216 1.9562 0.5119 29 1 8.0408 0.5420 0.5119 30 1 11.2034 -0.7576 -0.8544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037473387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -50.395256 kcal Electronic energy + Delta-G solvation = -18376.129294 eV Core-core repulsion = 15131.327431 eV Total energy + Delta-G solvation = -3244.801863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60757 -40.75860 -38.29151 -37.56364 -37.31673 -34.80265 -31.96084 -30.08034 -28.67987 -27.66311 -25.99890 -24.16149 -23.13012 -21.05713 -19.64444 -18.94843 -18.62862 -17.59519 -17.53845 -16.89933 -16.66913 -16.43459 -16.04361 -15.23271 -15.01046 -14.56801 -14.19999 -14.08163 -13.67228 -13.29445 -13.12010 -12.97939 -12.88345 -12.81599 -12.58739 -12.23423 -11.99536 -11.86513 -11.84227 -11.67079 -10.96646 -10.68492 -10.62424 -10.35508 -8.73638 -8.18827 -6.37250 -0.86632 -0.23583 0.08365 0.94350 1.22774 1.39445 1.42392 1.49104 1.86737 1.92016 2.23089 2.39544 3.08602 3.58221 3.82284 4.14200 4.38976 4.40883 4.41389 4.50378 4.73750 4.77549 4.83898 5.17001 5.34264 5.54471 5.74631 5.92707 5.98942 6.60257 6.71666 6.74678 7.32075 8.82953 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.005072 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.570202 B = 5518.719516 C = 6301.777965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.562 3.438 4 O -0.547 6.547 5 C -0.402 4.402 6 S 0.255 5.745 7 C 0.339 3.661 8 N -0.537 5.537 9 C 0.074 3.926 10 C 0.264 3.736 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.922 5.922 15 Si 0.959 3.041 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.280 1.280 19 N -0.587 5.587 20 C 0.271 3.729 21 Cl 0.025 6.975 22 H 0.060 0.940 23 H 0.131 0.869 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.020 0.980 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 4.560 1.996 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.410 3.590 4 O -0.441 6.441 5 C -0.528 4.528 6 S 0.505 5.495 7 C -0.029 4.029 8 N -0.246 5.246 9 C -0.067 4.067 10 C 0.142 3.858 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.181 4.181 14 N -0.561 5.561 15 Si 0.784 3.216 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.315 5.315 20 C 0.098 3.902 21 Cl 0.053 6.947 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.420 5.499 2.061 14.649 hybrid contribution 0.150 -1.704 -0.805 1.891 sum -13.270 3.795 1.255 13.859 Atomic orbital electron populations 1.23201 0.75296 1.05572 1.02477 1.86328 1.24736 1.30718 1.84126 1.17809 0.86457 0.82173 0.72570 1.90847 1.67190 1.36086 1.50003 1.22975 0.96197 0.96564 1.37079 1.83323 0.90467 1.03214 1.72538 1.23889 0.93675 0.91368 0.93994 1.47003 1.01104 1.08601 1.67899 1.22289 1.04798 0.75318 1.04320 1.19156 0.81089 0.88882 0.96705 1.21536 1.13682 1.30221 0.92591 0.92828 1.25659 0.96086 0.95104 1.01221 1.70010 1.20471 1.32831 1.32785 0.85595 0.77511 0.78576 0.79914 1.18747 1.20578 1.20564 1.65614 1.19312 1.16572 1.29992 1.20996 0.87076 0.89187 0.92982 1.98394 1.87510 1.13018 1.95728 0.92128 0.85057 0.91986 0.88995 0.88515 0.89562 0.94310 0.96191 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.45 113.37 1.18 1.73 16 2 O -0.34 -9.58 8.24 -58.90 -0.49 -10.06 16 3 C 0.56 18.43 7.72 68.63 0.53 18.96 16 4 O -0.55 -19.25 16.64 19.17 0.32 -18.93 16 5 C -0.40 -13.91 6.32 22.80 0.14 -13.77 16 6 S 0.26 7.81 21.36 -56.49 -1.21 6.60 16 7 C 0.34 12.87 7.71 179.44 1.38 14.25 16 8 N -0.54 -20.32 2.94 -740.63 -2.18 -22.50 16 9 C 0.07 1.92 10.39 127.77 1.33 3.25 16 10 C 0.26 12.63 5.27 85.63 0.45 13.08 16 11 C -0.54 -28.44 9.39 25.60 0.24 -28.20 16 12 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 13 C 0.02 1.05 5.46 84.66 0.46 1.51 16 14 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 15 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 N -0.59 -25.05 9.72 -191.32 -1.86 -26.90 16 20 C 0.27 10.20 7.41 84.55 0.63 10.83 16 21 Cl 0.02 0.82 27.10 -2.72 -0.07 0.75 16 22 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 23 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 25 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.10 2.51 8.07 -2.39 -0.02 2.49 16 27 H 0.09 1.84 7.01 -2.39 -0.02 1.82 16 28 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 29 H 0.02 1.09 7.59 -2.38 -0.02 1.08 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -65.27 299.65 4.36 -60.92 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: 1.18 Total: -4.31 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.35 Total: 21.63 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -3.75 Total: -101.22 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.17 Total: -28.99 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.21 Total: 6.60 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -0.07 Total: 0.75 kcal Total: -65.27 4.36 -60.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037473387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.520 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds