Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53004 * 109.47466 * 239.99707 * 2 1 3 5 5 C 1.50706 * 109.46979 * 119.99673 * 2 1 3 6 6 C 1.32232 * 120.87578 * 89.97623 * 5 2 1 7 7 S 1.77293 * 105.79355 * 179.97438 * 6 5 2 8 8 C 1.77380 * 94.50168 * 0.02562 * 7 6 5 9 9 N 1.31024 * 127.58641 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00194 * 0.02562 * 9 8 7 11 11 O 1.42094 * 106.40399 * 66.46034 * 10 9 8 12 12 O 1.42107 * 106.40194 * 293.54142 * 10 9 8 13 13 C 1.76203 * 107.21803 * 180.02562 * 10 9 8 14 14 H 1.08002 * 119.99736 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99719 * 180.27922 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71484 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72079 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 N 1.36467 * 120.88294 * 270.26726 * 5 2 1 22 22 H 0.97000 * 121.67689 * 0.06803 * 21 5 2 23 23 H 1.09002 * 109.47419 * 300.00335 * 1 2 3 24 24 H 1.09003 * 109.46957 * 60.00416 * 1 2 3 25 25 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46794 * 299.99684 * 3 2 1 28 28 H 1.08992 * 109.47144 * 60.00064 * 3 2 1 29 29 H 1.09001 * 109.46693 * 300.00417 * 4 2 1 30 30 H 1.08994 * 109.46907 * 60.00129 * 4 2 1 31 31 H 1.09002 * 109.47291 * 180.02562 * 4 2 1 32 32 H 1.07998 * 127.10713 * 0.02562 * 6 5 2 33 33 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2306 6 6 2.2580 -2.0132 1.2174 7 16 2.8295 -2.4204 2.8455 8 6 2.7211 -0.7568 3.4513 9 7 3.0134 -0.3230 4.6526 10 16 3.5556 -1.3807 5.8057 11 8 4.8273 -1.8369 5.3656 12 8 2.4719 -2.2550 6.0896 13 6 3.8411 -0.4499 7.2743 14 1 3.6553 0.6140 7.2839 15 6 4.3076 -1.0787 8.4091 16 7 4.5341 -2.3741 8.3972 17 14 4.6176 -0.0905 9.9638 18 1 4.2876 1.3362 9.7176 19 1 3.7652 -0.6140 11.0613 20 1 6.0471 -0.2082 10.3483 21 7 2.2606 -0.0272 2.3896 22 1 2.1069 0.9283 2.4565 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 2.1230 -2.6895 0.3862 33 1 4.8627 -2.8163 9.1956 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = -47.396736 kcal Electronic energy + Delta-G solvation = -18957.559150 eV Core-core repulsion = 15850.764113 eV Total energy + Delta-G solvation = -3106.795036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.40393 -36.62614 -35.10420 -34.03755 -33.57022 -32.83522 -30.32883 -27.63663 -27.33987 -26.13048 -24.45039 -21.59296 -20.35227 -18.83082 -17.68649 -16.87579 -16.72042 -15.99262 -15.25652 -14.99167 -14.68016 -14.40802 -14.19381 -14.09236 -13.71156 -13.56528 -12.63757 -12.59080 -12.06324 -11.97004 -11.91688 -11.50084 -11.46558 -11.24375 -11.18602 -11.09458 -10.70187 -10.61959 -10.51576 -10.26142 -10.12972 -9.60182 -9.21368 -8.96182 -8.73640 -7.51123 -6.67445 -5.26928 1.11695 1.38933 1.93862 2.04048 2.11793 3.10390 3.11100 3.21232 3.31221 4.13190 4.20538 4.41222 4.53371 4.68597 4.86096 5.01584 5.19178 5.25477 5.26668 5.39932 5.45902 5.49621 5.60152 5.64121 5.75623 5.77206 5.88780 5.93609 6.53470 6.72472 6.89783 7.30537 7.49107 8.06917 8.90910 10.28601 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.004423 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.070309 B = 6328.514538 C = 6695.543342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.152 4.152 4 C -0.140 4.140 5 C 0.110 3.890 6 C -0.230 4.230 7 S -0.010 6.010 8 C 0.478 3.522 9 N -0.960 5.960 10 S 2.657 3.343 11 O -1.003 7.003 12 O -1.003 7.003 13 C -0.987 4.987 14 H 0.109 0.891 15 C 0.128 3.872 16 N -0.845 5.845 17 Si 0.929 3.071 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.269 1.269 21 N -0.612 5.612 22 H 0.422 0.578 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.193 0.807 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 5.370 -19.373 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 C -0.210 4.210 4 C -0.198 4.198 5 C -0.004 4.004 6 C -0.371 4.371 7 S 0.229 5.771 8 C 0.093 3.907 9 N -0.808 5.808 10 S 2.760 3.240 11 O -0.992 6.992 12 O -0.992 6.992 13 C -1.122 5.122 14 H 0.127 0.873 15 C -0.090 4.090 16 N -0.475 5.475 17 Si 0.752 3.248 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.194 1.194 21 N -0.237 5.237 22 H 0.263 0.737 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.210 0.790 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.237 3.756 -18.245 19.644 hybrid contribution -0.176 1.957 0.574 2.047 sum -6.414 5.713 -17.671 19.648 Atomic orbital electron populations 1.21939 0.92487 1.03036 1.02506 1.19514 0.96368 0.95168 0.90287 1.21998 1.02066 0.94266 1.02667 1.21944 1.01913 1.00555 0.95370 1.19241 1.00819 0.92569 0.87807 1.24806 1.15040 0.96522 1.00702 1.86808 1.73141 1.09139 1.08025 1.23656 0.87457 0.90804 0.88762 1.73992 1.40773 1.55896 1.10185 1.02190 0.73571 0.72607 0.75670 1.93409 1.42770 1.80070 1.82943 1.93411 1.56198 1.64350 1.85240 1.29942 1.59227 1.08570 1.14445 0.87287 1.24833 0.89471 0.94749 0.99949 1.69922 1.36688 1.09094 1.31802 0.86008 0.78670 0.80485 0.79655 1.18397 1.19423 1.19431 1.42633 1.60711 1.12841 1.07469 0.73711 0.92179 0.91487 0.91607 0.91588 0.91093 0.92335 0.91582 0.91518 0.91651 0.79028 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.46 37.15 0.31 -0.63 16 2 C -0.01 -0.08 0.94 -155.66 -0.15 -0.22 16 3 C -0.15 -1.02 7.97 37.16 0.30 -0.73 16 4 C -0.14 -0.82 7.82 37.16 0.29 -0.53 16 5 C 0.11 1.28 5.44 -82.45 -0.45 0.83 16 6 C -0.23 -2.85 10.33 28.81 0.30 -2.56 16 7 S -0.01 -0.20 21.99 -107.50 -2.36 -2.57 16 8 C 0.48 9.92 8.59 -88.31 -0.76 9.16 16 9 N -0.96 -23.94 11.03 30.94 0.34 -23.60 16 10 S 2.66 80.17 4.00 -107.50 -0.43 79.74 16 11 O -1.00 -32.06 17.86 -57.17 -1.02 -33.08 16 12 O -1.00 -32.07 17.86 -57.17 -1.02 -33.09 16 13 C -0.99 -30.25 9.75 30.60 0.30 -29.95 16 14 H 0.11 3.11 7.81 -52.49 -0.41 2.70 16 15 C 0.13 3.81 5.46 -17.82 -0.10 3.71 16 16 N -0.85 -26.21 13.19 55.43 0.73 -25.48 16 17 Si 0.93 21.72 29.54 -169.99 -5.02 16.69 16 18 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 N -0.61 -8.97 5.35 -9.29 -0.05 -9.02 16 22 H 0.42 5.14 7.13 -40.82 -0.29 4.85 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 6.84 -51.93 -0.36 0.04 16 29 H 0.07 0.34 6.77 -51.93 -0.35 -0.01 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.19 1.63 6.72 -52.49 -0.35 1.28 16 33 H 0.29 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -38.98 307.48 -8.01 -47.00 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.85 Total: -0.32 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 0.04 Total: -20.91 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 1.02 Total: -58.10 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -2.04 Total: -66.17 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 79.97 SS G_CDS: -2.79 Total: 77.18 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -38.98 -8.01 -47.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.402 kcal (2) G-P(sol) polarization free energy of solvation -38.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds