Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 C 1.53004 * 109.47466 * 239.99707 * 2 1 3 5 5 C 1.50706 * 109.46979 * 119.99673 * 2 1 3 6 6 C 1.32232 * 120.87578 * 89.97623 * 5 2 1 7 7 S 1.77293 * 105.79355 * 179.97438 * 6 5 2 8 8 C 1.77380 * 94.50168 * 0.02562 * 7 6 5 9 9 N 1.31024 * 127.58641 * 180.02562 * 8 7 6 10 10 S 1.65600 * 120.00194 * 0.02562 * 9 8 7 11 11 O 1.42094 * 106.40399 * 66.46034 * 10 9 8 12 12 O 1.42107 * 106.40194 * 293.54142 * 10 9 8 13 13 C 1.76203 * 107.21803 * 180.02562 * 10 9 8 14 14 H 1.08002 * 119.99736 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99719 * 180.27922 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71484 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72079 * 15 13 10 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 N 1.36467 * 120.88294 * 270.26726 * 5 2 1 22 22 H 0.97000 * 121.67689 * 0.06803 * 21 5 2 23 23 H 1.09002 * 109.47419 * 300.00335 * 1 2 3 24 24 H 1.09003 * 109.46957 * 60.00416 * 1 2 3 25 25 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47036 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46794 * 299.99684 * 3 2 1 28 28 H 1.08992 * 109.47144 * 60.00064 * 3 2 1 29 29 H 1.09001 * 109.46693 * 300.00417 * 4 2 1 30 30 H 1.08994 * 109.46907 * 60.00129 * 4 2 1 31 31 H 1.09002 * 109.47291 * 180.02562 * 4 2 1 32 32 H 1.07998 * 127.10713 * 0.02562 * 6 5 2 33 33 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2306 6 6 2.2580 -2.0132 1.2174 7 16 2.8295 -2.4204 2.8455 8 6 2.7211 -0.7568 3.4513 9 7 3.0134 -0.3230 4.6526 10 16 3.5556 -1.3807 5.8057 11 8 4.8273 -1.8369 5.3656 12 8 2.4719 -2.2550 6.0896 13 6 3.8411 -0.4499 7.2743 14 1 3.6553 0.6140 7.2839 15 6 4.3076 -1.0787 8.4091 16 7 4.5341 -2.3741 8.3972 17 14 4.6176 -0.0905 9.9638 18 1 4.2876 1.3362 9.7176 19 1 3.7652 -0.6140 11.0613 20 1 6.0471 -0.2082 10.3483 21 7 2.2606 -0.0272 2.3896 22 1 2.1069 0.9283 2.4565 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 2.1230 -2.6895 0.3862 33 1 4.8627 -2.8163 9.1956 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -78.433645 kcal Electronic energy + Delta-G solvation = -18958.905011 eV Core-core repulsion = 15850.764113 eV Total energy + Delta-G solvation = -3108.140898 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55608 -37.68599 -37.44781 -36.29225 -35.45895 -34.71835 -31.46146 -28.43310 -28.14213 -27.93658 -25.79439 -22.77551 -21.84384 -20.63061 -19.26829 -18.64745 -18.39393 -17.71146 -16.90681 -16.74627 -15.97939 -15.93960 -15.57389 -15.20909 -14.78669 -14.72540 -14.05269 -13.61898 -13.37432 -13.23118 -13.08229 -13.05408 -12.77801 -12.67763 -12.53385 -12.50735 -12.32083 -12.29943 -11.85544 -11.73797 -11.70984 -11.32430 -11.05395 -11.01412 -10.83037 -9.00380 -8.87057 -7.61339 -0.48581 -0.10969 0.05431 0.68133 0.86166 1.28219 1.31126 1.50482 1.75435 2.18966 2.48618 3.04136 3.43195 3.54391 3.79832 3.97970 4.07661 4.27259 4.57575 4.61413 4.74122 4.80642 4.92981 4.98031 5.00659 5.07432 5.11568 5.21610 5.30304 5.33162 5.43872 5.51990 5.78204 6.02679 6.63566 8.13616 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.004423 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.070309 B = 6328.514538 C = 6695.543342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.157 4.157 4 C -0.142 4.142 5 C 0.110 3.890 6 C -0.201 4.201 7 S -0.080 6.080 8 C 0.466 3.534 9 N -0.986 5.986 10 S 2.657 3.343 11 O -1.043 7.043 12 O -1.043 7.043 13 C -1.019 5.019 14 H 0.120 0.880 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 1.005 2.995 18 H -0.247 1.247 19 H -0.250 1.250 20 H -0.250 1.250 21 N -0.586 5.586 22 H 0.436 0.564 23 H 0.048 0.952 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.240 0.760 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 7.067 -21.532 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.006 4.006 3 C -0.214 4.214 4 C -0.199 4.199 5 C -0.002 4.002 6 C -0.340 4.340 7 S 0.159 5.841 8 C 0.083 3.917 9 N -0.843 5.843 10 S 2.761 3.239 11 O -1.031 7.031 12 O -1.032 7.032 13 C -1.154 5.154 14 H 0.138 0.862 15 C -0.150 4.150 16 N -0.523 5.523 17 Si 0.821 3.179 18 H -0.170 1.170 19 H -0.173 1.173 20 H -0.174 1.174 21 N -0.211 5.211 22 H 0.279 0.721 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.256 0.744 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.258 5.435 -20.521 22.435 hybrid contribution 0.022 1.405 0.884 1.660 sum -7.236 6.840 -19.637 22.017 Atomic orbital electron populations 1.21982 0.91261 1.03476 1.03305 1.19741 0.97068 0.95392 0.88370 1.22067 1.01714 0.93770 1.03861 1.22014 1.01736 1.01254 0.94928 1.20151 0.99474 0.92694 0.87925 1.25411 1.14058 0.97084 0.97399 1.87126 1.73663 1.09354 1.13969 1.23897 0.86998 0.91728 0.89044 1.73795 1.45360 1.53654 1.11443 1.01866 0.72740 0.72853 0.76478 1.93323 1.44624 1.81585 1.83611 1.93325 1.56890 1.66646 1.86295 1.30301 1.60296 1.09322 1.15479 0.86196 1.26295 0.88380 0.96072 1.04266 1.70003 1.37354 1.11219 1.33710 0.84924 0.79871 0.78958 0.74180 1.16994 1.17330 1.17350 1.42695 1.58301 1.13518 1.06611 0.72085 0.93261 0.88910 0.91416 0.92284 0.88551 0.92621 0.90510 0.89188 0.92085 0.74418 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.46 71.98 0.61 -0.72 16 2 C 0.00 -0.03 0.94 -52.93 -0.05 -0.08 16 3 C -0.16 -1.55 7.97 71.98 0.57 -0.98 16 4 C -0.14 -0.98 7.82 71.98 0.56 -0.42 16 5 C 0.11 2.29 5.44 40.80 0.22 2.52 16 6 C -0.20 -4.51 10.33 66.78 0.69 -3.82 16 7 S -0.08 -3.17 21.99 -56.49 -1.24 -4.41 16 8 C 0.47 19.82 8.59 179.54 1.54 21.36 16 9 N -0.99 -51.32 11.03 -56.03 -0.62 -51.94 16 10 S 2.66 168.86 4.00 -56.49 -0.23 168.63 16 11 O -1.04 -70.62 17.86 -128.00 -2.29 -72.90 16 12 O -1.04 -70.64 17.86 -128.00 -2.29 -72.93 16 13 C -1.02 -64.65 9.75 67.73 0.66 -63.99 16 14 H 0.12 7.04 7.81 -2.91 -0.02 7.01 16 15 C 0.06 3.80 5.46 84.65 0.46 4.26 16 16 N -0.89 -57.13 13.19 21.45 0.28 -56.85 16 17 Si 1.01 44.29 29.54 68.60 2.03 46.32 16 18 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 21 N -0.59 -16.70 5.35 -183.29 -0.98 -17.68 16 22 H 0.44 10.12 7.13 -92.71 -0.66 9.46 16 23 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.59 6.84 -2.39 -0.02 0.57 16 29 H 0.08 0.39 6.77 -2.39 -0.02 0.37 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.24 3.02 6.72 -2.91 -0.02 3.00 16 33 H 0.30 17.07 8.31 -92.71 -0.77 16.30 16 Total: -1.00 -92.11 307.48 0.42 -91.69 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.48 Total: 11.94 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 5.27 Total: -41.87 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -1.32 Total: -126.47 kcal Atomic # 8 Polarization: -141.26 SS G_CDS: -4.57 Total: -145.84 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 165.69 SS G_CDS: -1.47 Total: 164.22 kcal Total: -92.11 0.42 -91.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.255 kcal (2) G-P(sol) polarization free energy of solvation -92.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds