Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36880 * 126.40123 * 2 1 4 4 Cl 1.73597 * 126.59726 * 0.02562 * 3 2 1 5 5 C 1.34791 * 106.80173 * 180.02562 * 3 2 1 6 6 N 1.34162 * 108.01603 * 359.97438 * 5 3 2 7 7 C 1.30470 * 109.27298 * 0.02562 * 6 5 3 8 8 C 1.50698 * 125.64302 * 180.26330 * 7 6 5 9 9 O 1.45190 * 109.47058 * 269.68651 * 8 7 6 10 10 C 1.34232 * 117.00328 * 180.02562 * 9 8 7 11 11 O 1.20826 * 119.99651 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00472 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47433 * 179.97438 * 12 10 9 14 14 C 1.76196 * 100.00142 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.38798 * 119.99878 * 179.97438 * 14 13 12 17 17 N 1.31631 * 120.00038 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00019 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46817 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47070 * 120.00082 * 18 16 14 21 21 H 1.48495 * 109.47146 * 240.00223 * 18 16 14 22 22 H 1.08999 * 109.47182 * 269.97164 * 1 2 3 23 23 H 1.09000 * 109.47439 * 29.97882 * 1 2 3 24 24 H 1.09009 * 109.46957 * 149.97306 * 1 2 3 25 25 H 1.08001 * 125.99128 * 179.97438 * 5 3 2 26 26 H 1.09001 * 109.47391 * 29.69041 * 8 7 6 27 27 H 1.09004 * 109.46541 * 149.68772 * 8 7 6 28 28 H 1.08997 * 109.47330 * 299.99787 * 12 10 9 29 29 H 1.09000 * 109.47330 * 59.99760 * 12 10 9 30 30 H 0.97002 * 119.99678 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 17 1.7697 2.7618 0.0006 5 6 3.5471 0.6496 -0.0006 6 7 3.5100 -0.6915 -0.0003 7 6 2.2670 -1.0880 -0.0002 8 6 1.8025 -2.5216 0.0057 9 8 1.6480 -2.9859 -1.3613 10 6 1.2366 -4.2521 -1.5320 11 8 1.0135 -4.9496 -0.5710 12 6 1.0542 -4.8042 -2.9223 13 16 0.4972 -6.5234 -2.8205 14 6 0.3684 -6.9053 -4.5358 15 1 0.6094 -6.1562 -5.2754 16 6 -0.0420 -8.1693 -4.9364 17 7 -0.3353 -9.0825 -4.0349 18 14 -0.1780 -8.5745 -6.7548 19 1 0.2057 -7.3851 -7.5569 20 1 0.7300 -9.7038 -7.0796 21 1 -1.5770 -8.9567 -7.0735 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5143 25 1 4.4381 1.2599 -0.0011 26 1 2.5391 -3.1401 0.5185 27 1 0.8458 -2.5913 0.5235 28 1 0.3096 -4.2116 -3.4538 29 1 2.0026 -4.7610 -3.4577 30 1 -0.6224 -9.9658 -4.3149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058938075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -46.218003 kcal Electronic energy + Delta-G solvation = -17573.700701 eV Core-core repulsion = 14329.079978 eV Total energy + Delta-G solvation = -3244.620724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42815 -41.50794 -37.94716 -37.67320 -35.30758 -34.60515 -32.52745 -31.02313 -28.39603 -27.74976 -27.29487 -22.81043 -22.65914 -21.38204 -19.92954 -18.84457 -18.56502 -17.78051 -17.28494 -17.00978 -16.88624 -16.18179 -16.00120 -15.33290 -14.89795 -14.66603 -14.49154 -14.13247 -13.80312 -13.66104 -13.56201 -13.17303 -12.97989 -12.91719 -12.65261 -12.60418 -11.96977 -11.77113 -11.70195 -11.29301 -11.16989 -10.87575 -10.37477 -9.59745 -8.72391 -8.37318 -6.16372 0.27184 0.44670 1.03516 1.07453 1.40085 1.42666 1.54312 1.63574 1.74874 2.11521 2.24042 2.98103 3.00111 3.29871 3.54416 3.69231 3.80842 4.12507 4.15664 4.20103 4.21943 4.34728 4.44875 4.53144 4.84260 5.11296 5.31078 5.42406 5.69194 6.18952 6.60052 6.67152 7.05095 8.72011 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.002772 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.248468 B =10099.655582 C =10358.162659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.438 5.438 3 C 0.022 3.978 4 Cl 0.018 6.982 5 C -0.005 4.005 6 N -0.487 5.487 7 C 0.205 3.795 8 C 0.153 3.847 9 O -0.351 6.351 10 C 0.496 3.504 11 O -0.511 6.511 12 C -0.109 4.109 13 S -0.131 6.131 14 C -0.548 4.548 15 H 0.085 0.915 16 C 0.017 3.983 17 N -0.909 5.909 18 Si 0.999 3.001 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.273 1.273 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.205 0.795 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 23.657 7.340 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.123 5.123 3 C -0.120 4.120 4 Cl 0.046 6.954 5 C -0.156 4.156 6 N -0.208 5.208 7 C -0.056 4.056 8 C 0.077 3.923 9 O -0.267 6.267 10 C 0.338 3.662 11 O -0.399 6.399 12 C -0.258 4.258 13 S 0.096 5.904 14 C -0.696 4.696 15 H 0.103 0.897 16 C -0.188 4.188 17 N -0.545 5.545 18 Si 0.821 3.179 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.198 1.198 22 H 0.125 0.875 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.222 0.778 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.907 22.267 8.610 23.950 hybrid contribution -0.593 0.965 -1.721 2.060 sum 1.314 23.232 6.889 24.267 Atomic orbital electron populations 1.22579 0.73490 1.06701 1.06144 1.45319 1.09452 1.04808 1.52738 1.22000 0.91197 0.83461 1.15378 1.98400 1.91508 1.08190 1.97311 1.22672 0.95981 0.90249 1.06681 1.70350 1.19129 1.12468 1.18873 1.22324 0.85855 0.89476 1.07947 1.21081 1.03847 0.86135 0.81190 1.86535 1.78596 1.29613 1.31962 1.22912 0.72463 0.79220 0.91608 1.90686 1.47048 1.59279 1.42860 1.23101 1.07568 1.01452 0.93641 1.85494 1.87395 1.05532 1.11999 1.23225 1.53110 1.01754 0.91468 0.89665 1.26089 0.93734 0.94822 1.04202 1.70161 1.43315 1.05085 1.35977 0.84902 0.78160 0.78608 0.76278 1.18133 1.20004 1.19840 0.87492 0.87477 0.88176 0.77818 0.87638 0.87078 0.85773 0.86276 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.65 127.77 1.36 1.94 16 2 N -0.44 -8.27 3.16 -526.51 -1.66 -9.93 16 3 C 0.02 0.40 7.49 83.11 0.62 1.02 16 4 Cl 0.02 0.24 28.93 -2.72 -0.08 0.16 16 5 C 0.00 -0.10 11.86 83.55 0.99 0.89 16 6 N -0.49 -12.94 11.25 -187.95 -2.11 -15.06 16 7 C 0.21 4.90 7.54 138.10 1.04 5.94 16 8 C 0.15 3.70 5.55 71.24 0.40 4.10 16 9 O -0.35 -10.35 10.20 -51.44 -0.52 -10.88 16 10 C 0.50 17.65 7.98 71.23 0.57 18.22 16 11 O -0.51 -21.03 15.61 21.96 0.34 -20.68 16 12 C -0.11 -4.20 6.27 71.23 0.45 -3.76 16 13 S -0.13 -6.90 20.57 -56.49 -1.16 -8.06 16 14 C -0.55 -30.17 9.50 67.95 0.65 -29.53 16 15 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 16 C 0.02 0.92 5.49 84.86 0.47 1.39 16 17 N -0.91 -53.98 13.22 21.65 0.29 -53.69 16 18 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.11 0.91 7.92 -2.39 -0.02 0.90 16 24 H 0.10 1.14 7.67 -2.38 -0.02 1.12 16 25 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 27 H 0.11 2.19 7.71 -2.39 -0.02 2.17 16 28 H 0.12 4.27 8.14 -2.40 -0.02 4.25 16 29 H 0.12 4.28 8.14 -2.40 -0.02 4.26 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.38 306.20 4.82 -66.55 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.17 Total: 6.90 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.54 Total: 0.22 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.49 Total: -78.68 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.18 Total: -31.56 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -1.16 Total: -8.06 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -71.38 4.82 -66.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058938075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.334 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds