Wall clock time and date at job start Tue Mar 31 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 S 1.81396 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.76204 * 103.00116 * 179.97438 * 5 4 3 7 7 N 1.29642 * 125.40847 * 359.69884 * 6 5 4 8 8 N 1.37759 * 115.61181 * 179.79521 * 7 6 5 9 9 C 1.29648 * 115.61058 * 0.49994 * 8 7 6 10 10 S 1.76199 * 125.40902 * 179.74210 * 9 8 7 11 11 C 1.81400 * 102.99848 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47065 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00162 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47211 * 89.99973 * 16 14 12 18 18 H 1.48498 * 109.47279 * 210.00458 * 16 14 12 19 19 H 1.48508 * 109.46938 * 330.00278 * 16 14 12 20 20 S 1.76032 * 109.18349 * 359.73888 * 9 8 7 21 21 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 22 22 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 30 30 H 1.09002 * 109.47274 * 300.00305 * 11 10 9 31 31 H 1.09003 * 109.47294 * 60.00236 * 11 10 9 32 32 H 0.96997 * 119.99644 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 16 4.1746 3.1528 0.0001 6 6 5.9254 2.9542 0.0000 7 7 6.5527 1.8197 0.0051 8 7 7.9280 1.8996 -0.0006 9 6 8.4196 3.0992 0.0000 10 16 10.1356 3.4992 0.0001 11 6 10.9343 1.8705 0.0000 12 6 12.4311 2.0450 0.0007 13 1 12.8591 3.0366 0.0008 14 6 13.2541 0.9389 0.0003 15 7 14.5605 1.0912 0.0014 16 14 12.5139 -0.7762 -0.0005 17 1 12.3177 -1.2300 -1.4007 18 1 13.4308 -1.7115 0.6992 19 1 11.2044 -0.7504 0.6995 20 16 7.1006 4.2649 0.0006 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9289 -0.8908 30 1 10.6328 1.3180 0.8900 31 1 10.6330 1.3181 -0.8900 32 1 15.1395 0.3130 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060766797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:54 Heat of formation + Delta-G solvation = 32.903066 kcal Electronic energy + Delta-G solvation = -15155.738426 eV Core-core repulsion = 12495.178321 eV Total energy + Delta-G solvation = -2660.560105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10744 -36.09487 -33.21497 -31.94518 -30.61240 -29.53359 -25.79790 -24.36577 -22.75756 -21.88291 -21.51054 -19.33517 -17.34635 -17.02319 -16.24945 -16.16934 -15.07322 -15.05729 -14.35620 -14.06354 -13.98172 -13.56095 -13.34449 -12.99685 -12.99241 -12.51372 -12.04129 -11.72974 -11.57093 -11.33245 -11.28632 -11.06514 -11.03578 -10.81324 -10.63184 -10.32206 -10.02843 -9.89275 -9.47433 -9.43162 -8.83672 -8.20487 -7.28313 -6.32010 -4.38368 0.35413 0.57782 1.03980 1.25350 1.85187 1.87864 2.20382 3.00942 3.20001 3.28367 3.33162 4.23258 4.30785 4.43506 4.61497 4.72131 4.83813 5.00393 5.09944 5.18912 5.23162 5.31463 5.36524 5.55412 5.67272 5.77605 5.88770 6.48481 6.52091 7.20322 7.84847 8.09643 8.63773 9.22269 10.78764 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.003344 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.287752 B = 8371.712471 C = 9527.646853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.107 4.107 5 S 0.001 5.999 6 C 0.012 3.988 7 N -0.281 5.281 8 N -0.294 5.294 9 C 0.042 3.958 10 S 0.024 5.976 11 C 0.027 3.973 12 C -0.529 4.529 13 H 0.087 0.913 14 C 0.089 3.911 15 N -0.884 5.884 16 Si 0.874 3.126 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.260 1.260 20 S 0.112 5.888 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.363 2.935 0.014 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.257 4.257 5 S 0.230 5.770 6 C -0.389 4.389 7 N -0.110 5.110 8 N -0.125 5.125 9 C -0.355 4.355 10 S 0.254 5.746 11 C -0.122 4.122 12 C -0.568 4.568 13 H 0.105 0.895 14 C -0.117 4.117 15 N -0.520 5.520 16 Si 0.700 3.300 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.184 1.184 20 S 0.346 5.654 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.206 4.375 0.022 25.582 hybrid contribution 0.075 -3.264 -0.025 3.265 sum -25.130 1.111 -0.003 25.155 Atomic orbital electron populations 1.21768 0.95328 1.01908 1.01979 1.21507 0.96093 0.95504 1.02781 1.21402 0.91144 0.98354 1.03521 1.23754 0.99378 0.95161 1.07427 1.85406 0.87787 1.12308 1.91546 1.30464 1.05407 0.95999 1.07038 1.75360 0.99269 1.20963 1.15424 1.75571 0.99723 1.17383 1.19855 1.31457 1.07634 0.94628 1.01817 1.85836 0.83301 1.18470 1.86951 1.21882 0.99630 0.89100 1.01626 1.20319 0.85646 0.96086 1.54791 0.89528 1.24759 0.94531 0.98966 0.93468 1.69843 1.02719 1.31154 1.48261 0.86838 0.79932 0.83929 0.79285 1.19593 1.20562 1.18445 1.85381 0.93202 1.10573 1.76257 0.92586 0.92578 0.92481 0.91508 0.91506 0.90721 0.90716 0.88521 0.88523 0.92808 0.93276 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.89 16 3 C -0.10 -0.70 5.22 -26.73 -0.14 -0.84 16 4 C -0.11 -1.00 5.54 37.16 0.21 -0.79 16 5 S 0.00 0.01 22.16 -107.50 -2.38 -2.37 16 6 C 0.01 0.19 7.82 51.84 0.41 0.59 16 7 N -0.28 -5.16 11.62 31.11 0.36 -4.80 16 8 N -0.29 -6.11 11.62 31.11 0.36 -5.75 16 9 C 0.04 0.80 7.82 51.84 0.41 1.21 16 10 S 0.02 0.48 22.08 -107.50 -2.37 -1.90 16 11 C 0.03 0.65 4.37 36.00 0.16 0.81 16 12 C -0.53 -14.48 9.68 -34.44 -0.33 -14.81 16 13 H 0.09 2.52 7.96 -52.49 -0.42 2.10 16 14 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.88 -25.89 13.96 55.43 0.77 -25.12 16 16 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 20 S 0.11 1.69 23.39 -107.50 -2.51 -0.83 16 21 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.31 7.20 -51.92 -0.37 0.94 16 31 H 0.05 1.19 7.57 -51.92 -0.39 0.79 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -29.80 319.13 -8.98 -38.78 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: -4.16 Total: -6.41 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 0.81 Total: -12.77 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 1.50 Total: -35.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -7.27 Total: -5.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.80 -8.98 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060766797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds