Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 S 1.81396 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.76204 * 103.00116 * 179.97438 * 5 4 3 7 7 N 1.29642 * 125.40847 * 359.69884 * 6 5 4 8 8 N 1.37759 * 115.61181 * 179.79521 * 7 6 5 9 9 C 1.29648 * 115.61058 * 0.49994 * 8 7 6 10 10 S 1.76199 * 125.40902 * 179.74210 * 9 8 7 11 11 C 1.81400 * 102.99848 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47065 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00065 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99933 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00162 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47211 * 89.99973 * 16 14 12 18 18 H 1.48498 * 109.47279 * 210.00458 * 16 14 12 19 19 H 1.48508 * 109.46938 * 330.00278 * 16 14 12 20 20 S 1.76032 * 109.18349 * 359.73888 * 9 8 7 21 21 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 22 22 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 25 25 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 30 30 H 1.09002 * 109.47274 * 300.00305 * 11 10 9 31 31 H 1.09003 * 109.47294 * 60.00236 * 11 10 9 32 32 H 0.96997 * 119.99644 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 16 4.1746 3.1528 0.0001 6 6 5.9254 2.9542 0.0000 7 7 6.5527 1.8197 0.0051 8 7 7.9280 1.8996 -0.0006 9 6 8.4196 3.0992 0.0000 10 16 10.1356 3.4992 0.0001 11 6 10.9343 1.8705 0.0000 12 6 12.4311 2.0450 0.0007 13 1 12.8591 3.0366 0.0008 14 6 13.2541 0.9389 0.0003 15 7 14.5605 1.0912 0.0014 16 14 12.5139 -0.7762 -0.0005 17 1 12.3177 -1.2300 -1.4007 18 1 13.4308 -1.7115 0.6992 19 1 11.2044 -0.7504 0.6995 20 16 7.1006 4.2649 0.0006 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6765 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9337 0.9286 0.8891 29 1 3.9330 0.9289 -0.8908 30 1 10.6328 1.3180 0.8900 31 1 10.6330 1.3181 -0.8900 32 1 15.1395 0.3130 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060766797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = 15.514925 kcal Electronic energy + Delta-G solvation = -15156.492432 eV Core-core repulsion = 12495.178321 eV Total energy + Delta-G solvation = -2661.314111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47943 -36.63751 -35.32162 -33.30780 -31.57835 -31.19425 -27.12486 -24.96588 -24.79944 -23.19363 -22.10948 -20.63481 -19.18930 -18.55771 -17.55856 -16.81658 -16.44708 -16.36302 -15.94892 -15.33426 -14.90097 -14.70578 -14.58657 -14.56074 -14.37332 -13.65318 -12.94870 -12.92094 -12.69172 -12.67001 -12.34544 -12.27424 -12.19405 -12.12600 -11.89937 -11.53401 -11.52808 -11.35121 -11.28089 -10.96186 -10.70572 -9.30689 -8.73262 -8.46331 -6.57484 -0.86593 -0.74202 -0.23667 -0.03268 0.48739 0.81946 0.95112 1.22740 1.29714 1.35752 1.43684 2.22413 2.87056 3.33704 3.71179 3.81526 3.90946 4.12311 4.28658 4.53675 4.54921 4.56710 4.61466 4.81513 4.89451 5.01812 5.16146 5.24273 5.30880 5.44796 5.93981 6.45772 6.49743 7.06870 8.68035 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.003344 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.287752 B = 8371.712471 C = 9527.646853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.109 4.109 5 S 0.046 5.954 6 C 0.008 3.992 7 N -0.310 5.310 8 N -0.325 5.325 9 C 0.016 3.984 10 S 0.035 5.965 11 C 0.027 3.973 12 C -0.535 4.535 13 H 0.057 0.943 14 C 0.038 3.962 15 N -0.925 5.925 16 Si 0.937 3.063 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.258 1.258 20 S 0.178 5.822 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.577 2.971 -0.016 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.138 4.138 4 C -0.259 4.259 5 S 0.275 5.725 6 C -0.392 4.392 7 N -0.141 5.141 8 N -0.157 5.157 9 C -0.382 4.382 10 S 0.265 5.735 11 C -0.123 4.123 12 C -0.575 4.575 13 H 0.075 0.925 14 C -0.165 4.165 15 N -0.563 5.563 16 Si 0.760 3.240 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.182 1.182 20 S 0.412 5.588 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.440 4.431 -0.009 28.784 hybrid contribution 0.797 -3.136 -0.016 3.235 sum -27.643 1.295 -0.024 27.674 Atomic orbital electron populations 1.21762 0.94461 1.02255 1.02409 1.21508 0.96788 0.94986 1.02582 1.21422 0.88929 0.98993 1.04449 1.23920 1.01092 0.93926 1.06946 1.85359 0.83888 1.13378 1.89841 1.31260 1.07934 0.95635 1.04338 1.75360 0.98136 1.22085 1.18503 1.75512 1.01634 1.18745 1.19779 1.31300 1.07740 0.96093 1.03055 1.85541 0.84535 1.15105 1.88352 1.21554 0.97932 0.91816 1.00994 1.20485 0.87756 0.94963 1.54254 0.92515 1.25599 0.94837 1.02993 0.93036 1.69954 1.04113 1.32578 1.49643 0.85847 0.79215 0.79224 0.79702 1.18727 1.19497 1.18197 1.85103 0.90622 1.08107 1.74946 0.92160 0.92146 0.92247 0.91765 0.91772 0.89771 0.89772 0.89069 0.89053 0.93461 0.93606 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.10 -1.04 5.22 30.59 0.16 -0.88 16 4 C -0.11 -1.77 5.54 71.98 0.40 -1.37 16 5 S 0.05 0.88 22.16 -56.49 -1.25 -0.37 16 6 C 0.01 0.22 7.82 130.57 1.02 1.24 16 7 N -0.31 -11.05 11.62 -55.47 -0.64 -11.69 16 8 N -0.33 -13.38 11.62 -55.48 -0.64 -14.02 16 9 C 0.02 0.62 7.82 130.56 1.02 1.64 16 10 S 0.03 1.41 22.08 -56.49 -1.25 0.16 16 11 C 0.03 1.31 4.37 71.23 0.31 1.62 16 12 C -0.54 -30.14 9.68 25.60 0.25 -29.89 16 13 H 0.06 3.45 7.96 -2.91 -0.02 3.43 16 14 C 0.04 2.15 5.47 84.65 0.46 2.62 16 15 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 16 Si 0.94 43.74 27.47 68.60 1.88 45.62 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 20 S 0.18 4.99 23.39 -56.49 -1.32 3.66 16 21 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 22 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 2.34 7.20 -2.39 -0.02 2.32 16 31 H 0.05 2.23 7.57 -2.39 -0.02 2.22 16 32 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -64.77 319.13 2.65 -62.12 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: 1.06 Total: -3.81 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.52 Total: -26.58 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -0.99 Total: -80.82 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -3.82 Total: 3.45 kcal Total: -64.77 2.65 -62.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060766797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.638 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds