Wall clock time and date at job start Tue Mar 31 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86809 * 119.99880 * 2 1 4 4 H 1.48500 * 109.47078 * 240.00439 * 3 2 1 5 5 H 1.48498 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46986 * 120.00322 * 3 2 1 7 7 C 1.38755 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00036 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00070 * 180.02562 * 9 7 2 11 11 O 1.21211 * 119.99883 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00002 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.35905 * 116.99604 * 180.02562 * 13 12 10 15 15 C 1.38723 * 120.05884 * 359.72201 * 14 13 12 16 16 C 1.38145 * 119.94323 * 179.77076 * 15 14 13 17 17 C 1.38260 * 120.05692 * 0.50972 * 16 15 14 18 18 C 1.50706 * 119.94706 * 179.76915 * 17 16 15 19 19 F 1.39902 * 109.46723 * 269.97560 * 18 17 16 20 20 F 1.39899 * 109.47068 * 29.97509 * 18 17 16 21 21 F 1.39895 * 109.47405 * 149.97596 * 18 17 16 22 22 C 1.38268 * 120.10972 * 359.74026 * 17 16 15 23 23 C 1.38139 * 120.05510 * 0.02562 * 22 17 16 24 24 H 0.96998 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47314 * 59.99936 * 12 10 9 26 26 H 1.08998 * 109.47471 * 299.99971 * 12 10 9 27 27 H 1.08001 * 120.02769 * 0.02562 * 15 14 13 28 28 H 1.08006 * 119.97076 * 180.25587 * 16 15 14 29 29 H 1.08008 * 119.97007 * 179.97438 * 22 17 16 30 30 H 1.08001 * 120.02451 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6966 -1.2126 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 8 2.3652 -5.8753 -0.0016 14 6 1.9121 -7.1566 -0.0027 15 6 0.5485 -7.4114 0.0025 16 6 0.0906 -8.7147 -0.0034 17 6 0.9901 -9.7648 -0.0039 18 6 0.4878 -11.1856 -0.0051 19 9 0.3325 -11.6264 1.3136 20 9 -0.7447 -11.2440 -0.6645 21 9 1.4092 -12.0055 -0.6653 22 6 2.3497 -9.5134 -0.0039 23 6 2.8127 -8.2119 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.7585 -4.9295 -0.8913 26 1 0.7579 -4.9299 0.8886 27 1 -0.1545 -6.5916 0.0070 28 1 -0.9710 -8.9136 -0.0035 29 1 3.0504 -10.3354 -0.0038 30 1 3.8748 -8.0161 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061567278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:20 Heat of formation + Delta-G solvation = -238.431383 kcal Electronic energy + Delta-G solvation = -21767.825176 eV Core-core repulsion = 17500.399942 eV Total energy + Delta-G solvation = -4267.425234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.33149 -47.85599 -47.78989 -40.47221 -39.07841 -37.67001 -35.21151 -32.28951 -31.64551 -31.27215 -28.77974 -25.80620 -25.16388 -23.26156 -22.04089 -20.41100 -18.86626 -18.65088 -18.54879 -18.13472 -17.74729 -16.75202 -16.25218 -15.83491 -15.10147 -14.74183 -14.66691 -14.47456 -14.41734 -14.38112 -14.26026 -14.05023 -13.96743 -13.94083 -13.60990 -13.08684 -12.86481 -12.24170 -11.84594 -11.70267 -11.47198 -11.19701 -11.09539 -10.53339 -10.49382 -9.96919 -9.39445 -9.18257 -8.69528 -8.62834 -6.53141 -4.22121 0.79481 0.98734 2.48808 2.69657 3.02613 3.14364 3.19355 3.24993 3.33887 3.57053 3.84426 3.94000 4.25822 4.40415 4.48514 4.64872 4.85608 4.97796 5.07932 5.22126 5.26374 5.35422 5.62190 5.74205 5.93410 6.00854 6.25867 6.46309 7.18867 7.27783 7.81079 8.53857 8.94975 9.65184 10.64263 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.048910 B = 0.002681 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.347203 B =10439.921529 C =10832.466699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.385 4.385 8 H 0.098 0.902 9 O -0.207 6.207 10 C 0.396 3.604 11 O -0.534 6.534 12 C 0.075 3.925 13 O -0.283 6.283 14 C 0.173 3.827 15 C -0.215 4.215 16 C -0.027 4.027 17 C -0.234 4.234 18 C 0.514 3.486 19 F -0.179 7.179 20 F -0.179 7.179 21 F -0.180 7.180 22 C -0.031 4.031 23 C -0.153 4.153 24 H 0.272 0.728 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -19.317 -0.004 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.160 4.160 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.460 4.460 8 H 0.116 0.884 9 O -0.115 6.115 10 C 0.241 3.759 11 O -0.430 6.430 12 C 0.000 4.000 13 O -0.194 6.194 14 C 0.126 3.874 15 C -0.233 4.233 16 C -0.045 4.045 17 C -0.236 4.236 18 C 0.460 3.540 19 F -0.161 7.161 20 F -0.161 7.161 21 F -0.161 7.161 22 C -0.049 4.049 23 C -0.172 4.172 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.163 0.837 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.079 -19.065 -0.004 19.095 hybrid contribution 0.001 0.539 -0.002 0.539 sum -1.079 -18.526 -0.005 18.558 Atomic orbital electron populations 1.69973 1.06036 1.28111 1.45848 1.25366 0.95887 0.98889 0.95883 0.85681 0.78620 0.79027 0.79498 1.19338 1.20261 1.19343 1.21224 0.92530 0.79244 1.53048 0.88417 1.83825 1.39039 1.12960 1.75660 1.22317 0.86738 0.86471 0.80387 1.90613 1.15261 1.87636 1.49483 1.21902 0.89735 0.84060 1.04350 1.86170 1.35023 1.11493 1.86720 1.19326 0.92435 0.84583 0.91082 1.21375 0.94740 0.98055 1.09152 1.20699 0.99668 0.91052 0.93061 1.19790 0.95822 0.91142 1.16806 1.18234 0.75100 0.87093 0.73616 1.93222 1.95515 1.91069 1.36266 1.93181 1.44777 1.96927 1.81199 1.93176 1.66422 1.75338 1.81170 1.20691 0.93528 0.96854 0.93842 1.20438 1.00443 0.89645 1.06658 0.91795 0.88482 0.88478 0.83727 0.84420 0.84134 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 3 Si 0.95 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.38 -11.05 9.65 30.92 0.30 -10.75 16 8 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 9 O -0.21 -5.68 9.75 -20.71 -0.20 -5.89 16 10 C 0.40 9.45 7.98 36.00 0.29 9.73 16 11 O -0.53 -14.36 15.74 -25.78 -0.41 -14.77 16 12 C 0.08 1.28 5.33 36.00 0.19 1.47 16 13 O -0.28 -4.77 9.67 -39.36 -0.38 -5.15 16 14 C 0.17 2.31 6.69 -39.22 -0.26 2.05 16 15 C -0.21 -2.43 9.04 -39.44 -0.36 -2.79 16 16 C -0.03 -0.27 9.39 -39.61 -0.37 -0.64 16 17 C -0.23 -2.43 5.45 -104.60 -0.57 -3.00 16 18 C 0.51 5.19 3.36 36.01 0.12 5.31 16 19 F -0.18 -1.90 17.30 2.25 0.04 -1.87 16 20 F -0.18 -1.85 16.46 2.25 0.04 -1.81 16 21 F -0.18 -1.82 16.46 2.25 0.04 -1.78 16 22 C -0.03 -0.31 9.39 -39.61 -0.37 -0.68 16 23 C -0.15 -1.77 9.99 -39.44 -0.39 -2.16 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.10 1.39 7.67 -51.93 -0.40 0.99 16 26 H 0.10 1.39 7.65 -51.93 -0.40 0.99 16 27 H 0.15 1.43 6.30 -52.49 -0.33 1.10 16 28 H 0.14 1.13 7.60 -52.48 -0.40 0.73 16 29 H 0.14 1.09 7.60 -52.48 -0.40 0.69 16 30 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -32.38 291.72 -4.11 -36.49 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -1.84 Total: -1.28 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.52 Total: -0.34 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.76 Total: -23.65 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.99 Total: -25.80 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.38 -4.11 -36.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061567278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.944 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds