Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86809 * 119.99880 * 2 1 4 4 H 1.48500 * 109.47078 * 240.00439 * 3 2 1 5 5 H 1.48498 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46986 * 120.00322 * 3 2 1 7 7 C 1.38755 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00036 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00070 * 180.02562 * 9 7 2 11 11 O 1.21211 * 119.99883 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00002 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.35905 * 116.99604 * 180.02562 * 13 12 10 15 15 C 1.38723 * 120.05884 * 359.72201 * 14 13 12 16 16 C 1.38145 * 119.94323 * 179.77076 * 15 14 13 17 17 C 1.38260 * 120.05692 * 0.50972 * 16 15 14 18 18 C 1.50706 * 119.94706 * 179.76915 * 17 16 15 19 19 F 1.39902 * 109.46723 * 269.97560 * 18 17 16 20 20 F 1.39899 * 109.47068 * 29.97509 * 18 17 16 21 21 F 1.39895 * 109.47405 * 149.97596 * 18 17 16 22 22 C 1.38268 * 120.10972 * 359.74026 * 17 16 15 23 23 C 1.38139 * 120.05510 * 0.02562 * 22 17 16 24 24 H 0.96998 * 119.99979 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47314 * 59.99936 * 12 10 9 26 26 H 1.08998 * 109.47471 * 299.99971 * 12 10 9 27 27 H 1.08001 * 120.02769 * 0.02562 * 15 14 13 28 28 H 1.08006 * 119.97076 * 180.25587 * 16 15 14 29 29 H 1.08008 * 119.97007 * 179.97438 * 22 17 16 30 30 H 1.08001 * 120.02451 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1021 1.6966 -1.2126 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6965 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 8 2.3652 -5.8753 -0.0016 14 6 1.9121 -7.1566 -0.0027 15 6 0.5485 -7.4114 0.0025 16 6 0.0906 -8.7147 -0.0034 17 6 0.9901 -9.7648 -0.0039 18 6 0.4878 -11.1856 -0.0051 19 9 0.3325 -11.6264 1.3136 20 9 -0.7447 -11.2440 -0.6645 21 9 1.4092 -12.0055 -0.6653 22 6 2.3497 -9.5134 -0.0039 23 6 2.8127 -8.2119 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.7585 -4.9295 -0.8913 26 1 0.7579 -4.9299 0.8886 27 1 -0.1545 -6.5916 0.0070 28 1 -0.9710 -8.9136 -0.0035 29 1 3.0504 -10.3354 -0.0038 30 1 3.8748 -8.0161 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061567278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = -257.248348 kcal Electronic energy + Delta-G solvation = -21768.641141 eV Core-core repulsion = 17500.399942 eV Total energy + Delta-G solvation = -4268.241199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.13994 -48.65886 -48.60518 -41.64192 -40.82956 -38.80422 -37.20911 -34.36991 -32.58520 -32.14903 -30.20643 -27.37019 -26.47199 -24.23522 -23.04157 -22.04097 -20.03639 -19.71274 -19.46076 -19.39319 -19.07449 -18.40881 -17.66444 -17.23170 -16.36386 -16.16544 -16.10591 -15.79551 -15.47916 -15.43738 -15.07125 -14.91367 -14.86839 -14.76786 -14.57504 -14.37128 -13.93454 -13.77621 -13.58521 -13.18809 -12.67360 -12.50009 -12.25675 -12.21657 -12.14183 -12.02952 -11.13155 -10.73905 -10.21689 -9.60452 -8.58826 -6.39604 -0.09468 0.15851 1.23344 1.25952 1.43341 1.56426 1.56493 1.69266 2.21599 2.38394 2.74049 2.88560 2.92634 3.04681 3.45128 3.61147 3.80048 3.90385 4.03917 4.09129 4.28949 4.37397 4.56570 4.83188 4.88756 5.08420 5.11538 5.15385 5.45458 5.76465 6.11949 6.55221 6.85868 7.62518 8.60903 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.048910 B = 0.002681 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.347203 B =10439.921529 C =10832.466699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.002 3.998 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.425 4.425 8 H 0.083 0.917 9 O -0.232 6.232 10 C 0.394 3.606 11 O -0.571 6.571 12 C 0.090 3.910 13 O -0.312 6.312 14 C 0.146 3.854 15 C -0.213 4.213 16 C -0.026 4.026 17 C -0.234 4.234 18 C 0.519 3.481 19 F -0.182 7.182 20 F -0.179 7.179 21 F -0.179 7.179 22 C -0.026 4.026 23 C -0.160 4.160 24 H 0.281 0.719 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -20.030 -0.020 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.500 4.500 8 H 0.101 0.899 9 O -0.140 6.140 10 C 0.241 3.759 11 O -0.468 6.468 12 C 0.014 3.986 13 O -0.225 6.225 14 C 0.101 3.899 15 C -0.231 4.231 16 C -0.044 4.044 17 C -0.236 4.236 18 C 0.465 3.535 19 F -0.163 7.163 20 F -0.161 7.161 21 F -0.160 7.160 22 C -0.044 4.044 23 C -0.178 4.178 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.683 -19.819 -0.020 19.891 hybrid contribution 0.184 0.546 0.002 0.576 sum -1.500 -19.274 -0.018 19.332 Atomic orbital electron populations 1.70040 1.07527 1.29736 1.46079 1.26515 0.96924 1.02145 0.94381 0.84688 0.77653 0.74249 0.79818 1.18627 1.18207 1.18634 1.21405 0.92310 0.80700 1.55634 0.89932 1.83838 1.39784 1.13722 1.76696 1.23677 0.86649 0.87972 0.77645 1.90574 1.17201 1.88402 1.50658 1.21868 0.89053 0.80528 1.07135 1.86105 1.35604 1.12780 1.87968 1.19578 0.93805 0.83264 0.93300 1.21533 0.94021 0.99069 1.08514 1.20957 1.00835 0.90451 0.92168 1.19969 0.96120 0.91433 1.16083 1.18134 0.75058 0.86860 0.73477 1.93222 1.95527 1.91078 1.36473 1.93184 1.44792 1.96914 1.81188 1.93181 1.66397 1.75312 1.81144 1.20919 0.93955 0.96781 0.92736 1.20608 1.00679 0.89896 1.06615 0.90915 0.85513 0.85500 0.82304 0.82262 0.81873 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.96 13.67 21.62 0.30 -50.66 16 2 C 0.00 0.09 5.49 84.88 0.47 0.55 16 3 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.43 -25.13 9.65 67.94 0.66 -24.47 16 8 H 0.08 4.98 6.86 -2.91 -0.02 4.96 16 9 O -0.23 -13.06 9.75 14.85 0.14 -12.92 16 10 C 0.39 19.16 7.98 71.23 0.57 19.73 16 11 O -0.57 -31.72 15.74 27.21 0.43 -31.29 16 12 C 0.09 2.96 5.33 71.23 0.38 3.34 16 13 O -0.31 -10.39 9.67 -73.43 -0.71 -11.10 16 14 C 0.15 3.74 6.69 22.50 0.15 3.89 16 15 C -0.21 -4.36 9.04 22.36 0.20 -4.16 16 16 C -0.03 -0.47 9.39 22.25 0.21 -0.26 16 17 C -0.23 -4.31 5.45 -19.85 -0.11 -4.42 16 18 C 0.52 9.26 3.36 71.24 0.24 9.50 16 19 F -0.18 -3.46 17.30 44.97 0.78 -2.68 16 20 F -0.18 -3.27 16.46 44.97 0.74 -2.53 16 21 F -0.18 -3.22 16.46 44.97 0.74 -2.48 16 22 C -0.03 -0.47 9.39 22.25 0.21 -0.26 16 23 C -0.16 -3.50 9.99 22.36 0.22 -3.27 16 24 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.13 3.42 7.67 -2.39 -0.02 3.40 16 26 H 0.13 3.42 7.65 -2.39 -0.02 3.40 16 27 H 0.16 2.71 6.30 -2.91 -0.02 2.69 16 28 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 29 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 30 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -71.49 291.72 8.85 -62.65 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.21 Total: 6.76 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 3.20 Total: 0.18 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.30 Total: -50.66 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.14 Total: -55.30 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 2.26 Total: -7.70 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.49 8.85 -62.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061567278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.601 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds