Wall clock time and date at job start Tue Mar 31 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47094 * 270.00386 * 3 2 1 5 5 H 1.48497 * 109.46856 * 30.00230 * 3 2 1 6 6 H 1.48500 * 109.46934 * 150.00017 * 3 2 1 7 7 C 1.38748 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99793 * 0.02562 * 7 2 1 9 9 O 1.34915 * 120.00246 * 179.97438 * 7 2 1 10 10 C 1.34318 * 117.00458 * 179.97438 * 9 7 2 11 11 O 1.21211 * 119.99394 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00510 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47333 * 180.02562 * 12 10 9 14 14 C 1.36831 * 125.06352 * 264.97445 * 13 12 10 15 15 C 1.34236 * 109.93005 * 180.02562 * 14 13 12 16 16 C 1.46485 * 106.99785 * 0.02562 * 15 14 13 17 17 C 1.39627 * 134.03205 * 179.97438 * 16 15 14 18 18 C 1.36625 * 119.76691 * 180.02562 * 17 16 15 19 19 N 1.48020 * 119.73752 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72597 * 19 18 17 22 22 C 1.38832 * 120.52654 * 0.25683 * 18 17 16 23 23 C 1.37749 * 120.66406 * 359.48083 * 22 18 17 24 24 C 1.37679 * 125.06150 * 85.00278 * 13 12 10 25 25 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46900 * 59.99792 * 12 10 9 27 27 H 1.09002 * 109.47314 * 300.01051 * 12 10 9 28 28 H 1.08008 * 125.03332 * 0.04701 * 14 13 12 29 29 H 1.08001 * 126.49732 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.11648 * 0.02562 * 17 16 15 31 31 H 1.07998 * 119.66683 * 179.72907 * 22 18 17 32 32 H 1.08002 * 120.11003 * 180.23574 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0466 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 -0.0005 8 1 1.4683 -2.1369 -0.0014 9 8 3.3574 -1.2015 -0.0011 10 6 3.9674 -2.3982 -0.0010 11 8 3.3072 -3.4148 -0.0010 12 6 5.4722 -2.4770 -0.0022 13 7 5.8877 -3.8819 -0.0025 14 6 6.2055 -4.6079 1.1129 15 6 6.5438 -5.8590 0.7635 16 6 6.4342 -5.9408 -0.6950 17 6 6.6496 -6.9561 -1.6290 18 6 6.4544 -6.7075 -2.9582 19 7 6.6834 -7.7841 -3.9479 20 8 7.0448 -8.8863 -3.5761 21 8 6.5061 -7.5692 -5.1335 22 6 6.0487 -5.4515 -3.3886 23 6 5.8254 -4.4371 -2.4838 24 6 6.0170 -4.6681 -1.1253 25 1 -0.4851 0.8400 0.0004 26 1 5.8626 -1.9825 0.8873 27 1 5.8613 -1.9831 -0.8926 28 1 6.1866 -4.2303 2.1246 29 1 6.8406 -6.6544 1.4311 30 1 6.9693 -7.9345 -1.3019 31 1 5.9028 -5.2690 -4.4430 32 1 5.5062 -3.4644 -2.8282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062310737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:04 Heat of formation + Delta-G solvation = -10.022205 kcal Electronic energy + Delta-G solvation = -21864.128894 eV Core-core repulsion = 18180.757716 eV Total energy + Delta-G solvation = -3683.371178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.20281 -41.59839 -39.42264 -37.49099 -36.47483 -35.67718 -33.23226 -32.53735 -31.41389 -29.67276 -28.01577 -26.12547 -25.11226 -23.13644 -21.93132 -21.17054 -20.09956 -18.97589 -18.62148 -18.27581 -17.44935 -17.33000 -17.18724 -16.51903 -15.43663 -15.35946 -14.65907 -14.48538 -14.38543 -13.89851 -13.49721 -13.41929 -13.01992 -12.68234 -12.52141 -12.41364 -11.95316 -11.55207 -11.41247 -11.37780 -11.11108 -11.07628 -10.73355 -10.61200 -10.18975 -9.94540 -9.58799 -8.90550 -8.73726 -8.09269 -6.58437 -4.36478 -0.01012 0.74046 1.49761 1.51234 2.25266 2.51918 2.80991 3.08349 3.11326 3.17968 3.36137 3.77932 4.03864 4.15961 4.39092 4.50321 4.59100 4.80100 4.91663 4.97282 5.01673 5.15530 5.21500 5.47127 5.61464 5.73781 5.81049 5.88263 6.09797 6.33442 6.47071 6.76414 6.88567 7.43919 7.74525 7.80588 8.31801 8.76798 9.34971 10.49242 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.003708 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.419673 B = 7548.634726 C = 8128.370838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.386 4.386 8 H 0.110 0.890 9 O -0.243 6.243 10 C 0.379 3.621 11 O -0.522 6.522 12 C 0.121 3.879 13 N -0.454 5.454 14 C 0.073 3.927 15 C -0.189 4.189 16 C -0.114 4.114 17 C 0.006 3.994 18 C -0.073 4.073 19 N 0.039 4.961 20 O -0.177 6.177 21 O -0.171 6.171 22 C -0.055 4.055 23 C -0.109 4.109 24 C 0.151 3.849 25 H 0.283 0.717 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.970 -5.443 0.369 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.128 0.872 9 O -0.151 6.151 10 C 0.222 3.778 11 O -0.416 6.416 12 C -0.003 4.003 13 N -0.136 5.136 14 C -0.051 4.051 15 C -0.213 4.213 16 C -0.120 4.120 17 C -0.014 4.014 18 C -0.157 4.157 19 N 0.555 4.445 20 O -0.390 6.390 21 O -0.386 6.386 22 C -0.076 4.076 23 C -0.130 4.130 24 C 0.041 3.959 25 H 0.093 0.907 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.195 0.805 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.381 -4.718 0.904 16.114 hybrid contribution -0.017 0.557 -0.185 0.587 sum 15.364 -4.161 0.719 15.933 Atomic orbital electron populations 1.69595 1.05774 1.28802 1.46182 1.24571 0.95030 0.98797 0.95220 0.86204 0.80191 0.81350 0.79085 1.19656 1.20484 1.18438 1.20640 0.75617 0.97150 1.52727 0.87200 1.83471 1.24429 1.30608 1.76589 1.22963 0.90275 0.83500 0.81017 1.90694 1.66155 1.36073 1.48707 1.21116 0.91902 0.79820 1.07420 1.43698 1.54774 1.10134 1.04952 1.22020 0.99958 0.91662 0.91427 1.21650 1.10751 0.97068 0.91793 1.18919 1.06615 0.92156 0.94282 1.20008 0.92587 0.99646 0.89142 1.20375 1.17535 0.89171 0.88667 1.43559 0.97291 1.01788 1.01822 1.94505 1.49202 1.10196 1.85061 1.94513 1.55498 1.88149 1.00390 1.20472 0.96367 0.89324 1.01396 1.20013 1.03723 1.00462 0.88835 1.18451 0.98102 0.90597 0.88749 0.90677 0.85406 0.86118 0.80466 0.82498 0.83073 0.82915 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 13.96 55.48 0.77 -23.62 16 2 C 0.07 1.86 5.49 -17.53 -0.10 1.76 16 3 Si 0.91 19.69 28.62 -169.99 -4.86 14.82 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.72 10.10 30.92 0.31 -10.40 16 8 H 0.11 3.44 7.09 -52.48 -0.37 3.06 16 9 O -0.24 -5.71 8.58 -20.71 -0.18 -5.89 16 10 C 0.38 7.69 7.97 36.00 0.29 7.98 16 11 O -0.52 -12.75 15.66 -19.05 -0.30 -13.05 16 12 C 0.12 1.56 6.59 -5.20 -0.03 1.53 16 13 N -0.45 -5.99 2.27 -115.71 -0.26 -6.26 16 14 C 0.07 0.81 11.27 -16.73 -0.19 0.63 16 15 C -0.19 -2.06 11.08 -37.67 -0.42 -2.48 16 16 C -0.11 -1.48 6.37 -105.14 -0.67 -2.15 16 17 C 0.01 0.07 9.55 -39.65 -0.38 -0.31 16 18 C -0.07 -0.99 6.81 -80.31 -0.55 -1.54 16 19 N 0.04 0.59 4.45 33.79 0.15 0.74 16 20 O -0.18 -2.70 18.40 -29.46 -0.54 -3.24 16 21 O -0.17 -2.66 18.42 -29.46 -0.54 -3.20 16 22 C -0.05 -0.70 9.52 -39.54 -0.38 -1.07 16 23 C -0.11 -1.42 10.00 -39.43 -0.39 -1.81 16 24 C 0.15 2.10 6.80 -83.99 -0.57 1.52 16 25 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.13 1.21 8.12 -51.93 -0.42 0.79 16 27 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.15 1.61 7.57 -52.48 -0.40 1.21 16 31 H 0.15 1.69 7.58 -52.49 -0.40 1.29 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -33.56 304.23 -6.67 -40.22 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.41 Total: 1.23 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.07 Total: -6.35 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.66 Total: -29.13 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.56 Total: -25.38 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.86 Total: 14.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.56 -6.67 -40.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062310737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.200 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds