Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47094 * 270.00386 * 3 2 1 5 5 H 1.48497 * 109.46856 * 30.00230 * 3 2 1 6 6 H 1.48500 * 109.46934 * 150.00017 * 3 2 1 7 7 C 1.38748 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99793 * 0.02562 * 7 2 1 9 9 O 1.34915 * 120.00246 * 179.97438 * 7 2 1 10 10 C 1.34318 * 117.00458 * 179.97438 * 9 7 2 11 11 O 1.21211 * 119.99394 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00510 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47333 * 180.02562 * 12 10 9 14 14 C 1.36831 * 125.06352 * 264.97445 * 13 12 10 15 15 C 1.34236 * 109.93005 * 180.02562 * 14 13 12 16 16 C 1.46485 * 106.99785 * 0.02562 * 15 14 13 17 17 C 1.39627 * 134.03205 * 179.97438 * 16 15 14 18 18 C 1.36625 * 119.76691 * 180.02562 * 17 16 15 19 19 N 1.48020 * 119.73752 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72597 * 19 18 17 22 22 C 1.38832 * 120.52654 * 0.25683 * 18 17 16 23 23 C 1.37749 * 120.66406 * 359.48083 * 22 18 17 24 24 C 1.37679 * 125.06150 * 85.00278 * 13 12 10 25 25 H 0.96999 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46900 * 59.99792 * 12 10 9 27 27 H 1.09002 * 109.47314 * 300.01051 * 12 10 9 28 28 H 1.08008 * 125.03332 * 0.04701 * 14 13 12 29 29 H 1.08001 * 126.49732 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.11648 * 0.02562 * 17 16 15 31 31 H 1.07998 * 119.66683 * 179.72907 * 22 18 17 32 32 H 1.08002 * 120.11003 * 180.23574 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0466 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 -0.0005 8 1 1.4683 -2.1369 -0.0014 9 8 3.3574 -1.2015 -0.0011 10 6 3.9674 -2.3982 -0.0010 11 8 3.3072 -3.4148 -0.0010 12 6 5.4722 -2.4770 -0.0022 13 7 5.8877 -3.8819 -0.0025 14 6 6.2055 -4.6079 1.1129 15 6 6.5438 -5.8590 0.7635 16 6 6.4342 -5.9408 -0.6950 17 6 6.6496 -6.9561 -1.6290 18 6 6.4544 -6.7075 -2.9582 19 7 6.6834 -7.7841 -3.9479 20 8 7.0448 -8.8863 -3.5761 21 8 6.5061 -7.5692 -5.1335 22 6 6.0487 -5.4515 -3.3886 23 6 5.8254 -4.4371 -2.4838 24 6 6.0170 -4.6681 -1.1253 25 1 -0.4851 0.8400 0.0004 26 1 5.8626 -1.9825 0.8873 27 1 5.8613 -1.9831 -0.8926 28 1 6.1866 -4.2303 2.1246 29 1 6.8406 -6.6544 1.4311 30 1 6.9693 -7.9345 -1.3019 31 1 5.9028 -5.2690 -4.4430 32 1 5.5062 -3.4644 -2.8282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062310737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -29.307615 kcal Electronic energy + Delta-G solvation = -21864.965172 eV Core-core repulsion = 18180.757716 eV Total energy + Delta-G solvation = -3684.207456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.30273 -42.63471 -41.12872 -38.54464 -37.65198 -37.44250 -34.59512 -34.23451 -32.46863 -30.67506 -29.22048 -27.57311 -26.58250 -24.11937 -23.06014 -22.43626 -21.29937 -20.24952 -20.04503 -19.76596 -18.95779 -18.59128 -18.27861 -17.47861 -17.02929 -16.94226 -15.99874 -15.67806 -15.41384 -15.28592 -14.56815 -14.51891 -14.32233 -14.08255 -13.86915 -13.66346 -13.09740 -13.02166 -12.70917 -12.45085 -12.39019 -12.32401 -12.28377 -12.24168 -11.90362 -11.39334 -11.06419 -10.88648 -9.75370 -9.02793 -8.59210 -6.48567 -1.12363 -0.22546 0.39784 0.41517 1.19372 1.23146 1.37095 1.48693 1.56732 1.62864 2.23890 2.30985 2.44786 2.86866 3.19212 3.48248 3.56785 3.68743 3.87456 4.05232 4.10686 4.14851 4.24676 4.35730 4.57696 4.73376 4.78014 4.88593 5.10019 5.38101 5.39491 5.45207 5.78103 5.81853 6.00957 6.45186 6.55560 6.75502 7.44136 8.53461 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.003708 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.419673 B = 7548.634726 C = 8128.370838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.238 1.238 7 C -0.409 4.409 8 H 0.052 0.948 9 O -0.247 6.247 10 C 0.386 3.614 11 O -0.568 6.568 12 C 0.132 3.868 13 N -0.463 5.463 14 C 0.066 3.934 15 C -0.188 4.188 16 C -0.127 4.127 17 C 0.009 3.991 18 C -0.086 4.086 19 N 0.040 4.960 20 O -0.183 6.183 21 O -0.190 6.190 22 C -0.058 4.058 23 C -0.117 4.117 24 C 0.129 3.871 25 H 0.290 0.710 26 H 0.177 0.823 27 H 0.156 0.844 28 H 0.212 0.788 29 H 0.186 0.814 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.642 -3.958 1.533 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.161 1.161 7 C -0.485 4.485 8 H 0.070 0.930 9 O -0.156 6.156 10 C 0.231 3.769 11 O -0.463 6.463 12 C 0.010 3.990 13 N -0.144 5.144 14 C -0.057 4.057 15 C -0.210 4.210 16 C -0.133 4.133 17 C -0.011 4.011 18 C -0.172 4.172 19 N 0.553 4.447 20 O -0.396 6.396 21 O -0.401 6.401 22 C -0.079 4.079 23 C -0.138 4.138 24 C 0.019 3.981 25 H 0.100 0.900 26 H 0.194 0.806 27 H 0.173 0.827 28 H 0.229 0.771 29 H 0.204 0.796 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 18.068 -3.275 2.049 18.476 hybrid contribution -0.827 -0.115 -0.496 0.971 sum 17.241 -3.390 1.553 17.639 Atomic orbital electron populations 1.69713 1.07939 1.30452 1.47563 1.25658 0.95941 1.03046 0.93853 0.85025 0.79335 0.75176 0.79868 1.18506 1.19615 1.16069 1.20212 0.77626 0.95552 1.55063 0.92994 1.83484 1.21905 1.32197 1.77981 1.24710 0.93319 0.81829 0.77018 1.90685 1.68251 1.37494 1.49861 1.21448 0.85486 0.80650 1.11445 1.43887 1.54861 1.10382 1.05309 1.22714 0.99040 0.91632 0.92271 1.22092 1.10021 0.97959 0.90975 1.19258 1.06578 0.91898 0.95572 1.20219 0.91779 1.00409 0.88676 1.20544 1.18725 0.89071 0.88820 1.43757 0.96965 1.02004 1.01958 1.94483 1.49323 1.10725 1.85031 1.94502 1.56325 1.88300 1.00977 1.20635 0.96113 0.89060 1.02097 1.20198 1.03764 1.01017 0.88861 1.18780 0.98582 0.91414 0.89355 0.89996 0.80604 0.82654 0.77103 0.79648 0.81440 0.81853 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 13.96 21.62 0.30 -53.01 16 2 C 0.02 0.84 5.49 84.87 0.47 1.30 16 3 Si 0.99 39.50 28.62 68.60 1.96 41.46 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.24 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.41 -23.40 10.10 67.94 0.69 -22.71 16 8 H 0.05 3.49 7.09 -2.91 -0.02 3.47 16 9 O -0.25 -11.41 8.58 14.85 0.13 -11.29 16 10 C 0.39 15.19 7.97 71.23 0.57 15.76 16 11 O -0.57 -28.10 15.66 20.77 0.33 -27.78 16 12 C 0.13 2.91 6.59 85.63 0.56 3.47 16 13 N -0.46 -10.77 2.27 -520.00 -1.18 -11.95 16 14 C 0.07 1.23 11.27 83.00 0.94 2.16 16 15 C -0.19 -3.53 11.08 23.51 0.26 -3.27 16 16 C -0.13 -3.07 6.37 -20.20 -0.13 -3.20 16 17 C 0.01 0.21 9.55 22.23 0.21 0.42 16 18 C -0.09 -2.32 6.81 36.14 0.25 -2.07 16 19 N 0.04 1.21 4.45 -47.02 -0.21 1.00 16 20 O -0.18 -5.52 18.40 18.88 0.35 -5.17 16 21 O -0.19 -5.95 18.42 18.89 0.35 -5.60 16 22 C -0.06 -1.46 9.52 22.30 0.21 -1.24 16 23 C -0.12 -2.92 10.00 22.37 0.22 -2.69 16 24 C 0.13 3.33 6.80 39.03 0.27 3.60 16 25 H 0.29 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.18 2.30 8.12 -2.39 -0.02 2.28 16 27 H 0.16 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.21 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.17 3.32 7.57 -2.91 -0.02 3.30 16 31 H 0.16 3.57 7.58 -2.91 -0.02 3.55 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -78.02 304.23 7.71 -70.31 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.18 Total: 10.50 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.51 Total: -8.47 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -1.09 Total: -63.96 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: 1.15 Total: -49.84 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.96 Total: 41.46 kcal Total: -78.02 7.71 -70.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062310737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.001 kcal (2) G-P(sol) polarization free energy of solvation -78.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds