Wall clock time and date at job start Tue Mar 31 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47198 * 2 1 4 4 C 1.36888 * 120.00214 * 99.20540 * 3 2 1 5 5 H 1.08002 * 120.00108 * 160.23993 * 4 3 2 6 6 C 1.39003 * 119.99781 * 340.51657 * 4 3 2 7 7 N 1.31398 * 119.99963 * 342.41490 * 6 4 3 8 8 Si 1.86797 * 119.99902 * 162.41885 * 6 4 3 9 9 H 1.48500 * 109.47136 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47293 * 119.99883 * 8 6 4 11 11 H 1.48500 * 109.47341 * 239.99928 * 8 6 4 12 12 C 1.34775 * 120.00031 * 279.20364 * 3 2 1 13 13 O 1.21761 * 119.99861 * 178.27030 * 12 3 2 14 14 C 1.46408 * 120.00036 * 358.27446 * 12 3 2 15 15 C 1.38086 * 126.22960 * 9.02075 * 14 12 3 16 16 C 1.39750 * 107.13004 * 179.97438 * 15 14 12 17 17 Cl 1.73602 * 126.05826 * 180.02562 * 16 15 14 18 18 C 1.35763 * 107.88743 * 359.97438 * 16 15 14 19 19 Cl 1.73610 * 125.58014 * 179.97438 * 18 16 15 20 20 N 1.35708 * 108.83944 * 359.75627 * 18 16 15 21 21 C 1.46508 * 125.69783 * 180.24534 * 20 18 16 22 22 H 1.08996 * 109.47316 * 172.66121 * 1 2 3 23 23 H 1.09004 * 109.47080 * 292.66331 * 1 2 3 24 24 H 1.08996 * 109.46792 * 52.65876 * 1 2 3 25 25 H 1.08992 * 109.47261 * 239.99492 * 2 1 3 26 26 H 1.09005 * 109.46728 * 119.99720 * 2 1 3 27 27 H 0.97001 * 120.00123 * 180.02562 * 7 6 4 28 28 H 1.08010 * 126.43445 * 0.02562 * 15 14 12 29 29 H 1.08999 * 109.47001 * 266.37103 * 21 20 18 30 30 H 1.08995 * 109.47273 * 26.37465 * 21 20 18 31 31 H 1.09003 * 109.46464 * 146.37358 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4253 1.9633 1.1702 5 1 3.0679 2.8310 1.1468 6 6 2.0163 1.4341 2.3887 7 7 0.9890 0.6162 2.4381 8 14 2.9268 1.8857 3.9560 9 1 4.0382 2.8158 3.6322 10 1 1.9892 2.5439 4.9010 11 1 3.4771 0.6560 4.5806 12 6 2.0670 2.0787 -1.1522 13 8 2.4431 3.2368 -1.1473 14 6 1.6675 1.4441 -2.4096 15 6 1.0613 0.2108 -2.5448 16 6 0.8579 -0.0004 -3.9112 17 17 0.1269 -1.4008 -4.6311 18 6 1.3323 1.0842 -4.5759 19 17 1.3106 1.3027 -6.2980 20 7 1.8217 1.9717 -3.6734 21 6 2.4183 3.2719 -3.9900 22 1 -0.3634 -1.0192 -0.1313 23 1 -0.3633 0.3960 0.9483 24 1 -0.3633 0.6233 -0.8170 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.7033 0.2471 3.2884 28 1 0.7938 -0.4637 -1.7446 29 1 3.4998 3.1648 -4.0731 30 1 2.0156 3.6359 -4.9352 31 1 2.1833 3.9821 -3.1972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:52 Heat of formation + Delta-G solvation = 26.707955 kcal Electronic energy + Delta-G solvation = -19281.660479 eV Core-core repulsion = 16038.158356 eV Total energy + Delta-G solvation = -3243.502123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.64649 -40.03785 -37.81688 -37.53901 -37.17242 -34.49925 -33.34463 -31.72466 -30.05705 -27.50777 -26.92926 -24.23895 -23.13282 -22.13299 -20.47111 -19.04873 -18.28057 -17.61857 -16.88688 -16.61458 -16.01121 -15.54467 -15.47547 -15.32673 -15.06440 -14.42959 -14.07606 -13.79284 -13.46662 -13.24094 -12.99644 -12.85828 -12.83017 -12.54369 -12.37341 -12.31286 -12.16441 -12.06304 -11.80037 -11.60011 -10.92725 -10.50582 -9.81320 -9.60126 -9.21102 -8.31185 -5.94629 0.30850 0.42092 1.07247 1.21872 1.45582 1.46583 1.58729 1.93725 2.30693 2.39531 3.02387 3.12040 3.72094 3.86705 4.02565 4.27083 4.42323 4.50603 4.59342 4.71988 4.82256 4.90550 5.15660 5.26475 5.40259 5.43781 5.59264 5.76979 6.01172 6.07946 6.51267 7.11641 7.36493 7.94353 8.62651 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.005259 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.021556 B = 5323.288603 C = 6250.517289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 N -0.420 5.420 4 C -0.342 4.342 5 H 0.077 0.923 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.991 3.009 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.265 1.265 12 C 0.486 3.514 13 O -0.635 6.635 14 C -0.003 4.003 15 C -0.161 4.161 16 C -0.105 4.105 17 Cl -0.025 7.025 18 C 0.078 3.922 19 Cl 0.014 6.986 20 N -0.405 5.405 21 C 0.066 3.934 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.278 0.722 28 H 0.197 0.803 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 -4.219 -11.555 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.135 5.135 4 C -0.470 4.470 5 H 0.095 0.905 6 C -0.197 4.197 7 N -0.501 5.501 8 Si 0.814 3.186 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.189 1.189 12 C 0.277 3.723 13 O -0.526 6.526 14 C -0.118 4.118 15 C -0.186 4.186 16 C -0.140 4.140 17 Cl 0.004 6.996 18 C -0.066 4.066 19 Cl 0.043 6.957 20 N -0.081 5.081 21 C -0.074 4.074 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.214 0.786 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.890 -3.551 -11.650 12.212 hybrid contribution 0.275 0.356 0.521 0.688 sum -0.615 -3.195 -11.129 11.595 Atomic orbital electron populations 1.22327 0.95002 1.01266 1.03020 1.22059 0.95757 0.82087 1.01769 1.43653 1.52612 1.11819 1.05371 1.19686 1.29070 1.14926 0.83288 0.90512 1.26048 0.95678 0.96495 1.01451 1.70046 1.21501 1.30803 1.27776 0.84926 0.78136 0.78464 0.77070 1.20085 1.20122 1.18942 1.17002 0.86148 0.85694 0.83465 1.90567 1.56356 1.18464 1.87164 1.20201 1.10477 0.96067 0.85018 1.22694 1.03497 0.96615 0.95825 1.19674 1.10169 0.91716 0.92429 1.98305 1.81153 1.37512 1.82622 1.20690 1.08997 0.92526 0.84359 1.98370 1.97425 1.97018 1.02933 1.43874 1.44528 1.15869 1.03877 1.22420 0.99696 0.81099 1.04154 0.90813 0.90021 0.94708 0.90293 0.90183 0.91210 0.78634 0.89437 0.87064 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.28 8.09 71.98 0.58 -5.70 16 2 C 0.11 4.50 4.78 86.38 0.41 4.92 16 3 N -0.42 -21.25 2.64 -640.33 -1.69 -22.94 16 4 C -0.34 -18.60 9.30 84.09 0.78 -17.82 16 5 H 0.08 4.49 7.40 -2.91 -0.02 4.47 16 6 C 0.01 0.37 4.95 84.94 0.42 0.79 16 7 N -0.86 -41.66 8.42 21.67 0.18 -41.48 16 8 Si 0.99 39.90 29.59 68.60 2.03 41.93 16 9 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 12 C 0.49 24.37 7.44 86.37 0.64 25.01 16 13 O -0.63 -35.20 14.41 -4.54 -0.07 -35.27 16 14 C 0.00 -0.12 6.62 40.29 0.27 0.15 16 15 C -0.16 -5.79 7.28 22.60 0.16 -5.63 16 16 C -0.10 -3.35 6.66 22.06 0.15 -3.20 16 17 Cl -0.02 -0.65 29.12 -2.72 -0.08 -0.73 16 18 C 0.08 2.41 7.39 83.52 0.62 3.03 16 19 Cl 0.01 0.34 28.42 -2.72 -0.08 0.26 16 20 N -0.41 -14.24 3.17 -522.86 -1.66 -15.90 16 21 C 0.07 1.97 10.44 127.77 1.33 3.31 16 22 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 23 H 0.08 3.72 5.75 -2.39 -0.01 3.71 16 24 H 0.03 1.39 6.21 -2.39 -0.01 1.37 16 25 H 0.08 3.01 4.90 -2.39 -0.01 2.99 16 26 H 0.08 3.63 6.23 -2.38 -0.01 3.61 16 27 H 0.28 12.42 8.31 -92.71 -0.77 11.64 16 28 H 0.20 6.74 3.15 -2.91 -0.01 6.73 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.11 2.51 7.63 -2.39 -0.02 2.49 16 31 H 0.09 3.19 6.38 -2.39 -0.02 3.17 16 Total: -1.00 -59.74 282.25 5.20 -54.54 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.19 Total: 14.73 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.37 Total: 4.85 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -3.17 Total: -80.32 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.07 Total: -35.27 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.16 Total: -0.47 kcal Total: -59.74 5.20 -54.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.245 kcal (2) G-P(sol) polarization free energy of solvation -59.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds