Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00009 * 2 1 4 4 C 1.50703 * 109.46736 * 85.72214 * 3 2 1 5 5 H 1.08002 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99785 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99745 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00009 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47006 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47400 * 119.99719 * 8 6 4 11 11 H 1.48501 * 109.47141 * 240.00200 * 8 6 4 12 12 S 1.65603 * 119.99973 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40419 * 14.26507 * 12 2 1 14 14 O 1.42106 * 106.40248 * 147.17983 * 12 2 1 15 15 C 1.76194 * 107.22095 * 260.71988 * 12 2 1 16 16 C 1.38167 * 120.42938 * 247.14443 * 15 12 2 17 17 N 1.31881 * 120.77704 * 179.97438 * 16 15 12 18 18 C 1.31907 * 121.76122 * 0.02562 * 17 16 15 19 19 C 1.38131 * 120.77539 * 0.02562 * 18 17 16 20 20 C 1.38783 * 120.42688 * 66.86220 * 15 12 2 21 21 Cl 1.73602 * 120.80239 * 0.02562 * 20 15 12 22 22 H 1.08993 * 109.47249 * 84.37677 * 1 2 3 23 23 H 1.09005 * 109.46837 * 204.37388 * 1 2 3 24 24 H 1.08993 * 109.47071 * 324.37509 * 1 2 3 25 25 H 1.09001 * 109.47214 * 205.71892 * 3 2 1 26 26 H 1.08992 * 109.47044 * 325.71935 * 3 2 1 27 27 H 0.97000 * 119.99737 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.61008 * 0.02562 * 16 15 12 29 29 H 1.07997 * 119.61097 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.42262 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3568 1.7567 1.4169 5 1 1.9525 1.1797 2.2355 6 6 3.0179 2.9403 1.6682 7 7 3.5098 3.6432 0.6713 8 14 3.2148 3.5456 3.4243 9 1 2.5766 2.5804 4.3550 10 1 4.6592 3.6647 3.7479 11 1 2.5646 4.8731 3.5662 12 16 2.2930 -1.4342 -0.0006 13 8 1.3495 -2.4421 -0.3370 14 8 3.4858 -1.2086 -0.7394 15 6 2.7889 -1.7510 1.6601 16 6 4.1259 -1.7288 2.0076 17 7 4.5047 -1.9644 3.2487 18 6 3.6327 -2.2293 4.2023 19 6 2.2790 -2.2699 3.9308 20 6 1.8410 -2.0203 2.6374 21 17 0.1491 -2.0525 2.2500 22 1 -0.3633 0.1007 -1.0226 23 1 -0.3633 -0.9361 0.4241 24 1 -0.3633 0.8353 0.5986 25 1 3.1810 1.1205 -0.4460 26 1 1.6438 2.0079 -0.5788 27 1 3.9752 4.4757 0.8481 28 1 4.8696 -1.5151 1.2541 29 1 3.9814 -2.4174 5.2070 30 1 1.5700 -2.4877 4.7159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070588156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -32.920570 kcal Electronic energy + Delta-G solvation = -19675.209856 eV Core-core repulsion = 16431.165752 eV Total energy + Delta-G solvation = -3244.044104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08830 -37.10660 -36.59142 -35.59692 -35.37500 -32.56670 -32.26692 -31.53262 -27.87710 -25.17321 -24.11364 -23.72645 -22.33075 -18.79676 -17.86421 -17.15335 -16.83934 -16.62122 -16.33856 -15.35296 -14.53120 -14.48842 -14.26240 -13.97221 -13.57447 -13.37890 -12.85658 -12.53347 -12.32731 -12.18490 -11.87906 -11.64918 -11.37456 -11.22272 -11.17767 -10.89882 -10.60547 -10.50015 -10.18043 -9.86074 -9.68199 -9.60608 -9.40346 -8.56916 -8.13643 -6.18516 -4.25543 0.53880 0.93682 1.00868 1.74763 3.19270 3.27619 3.28897 3.37799 3.61427 4.13841 4.30764 4.38543 4.45385 4.70752 5.09274 5.13321 5.16885 5.51415 5.53710 5.58368 5.69891 6.04772 6.23898 6.40334 6.48478 7.23368 7.31269 7.50569 7.75503 7.77740 8.05336 8.78950 9.41402 10.89326 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.009197 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.298861 B = 3043.686922 C = 3661.723025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.977 5.977 3 C 0.243 3.757 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.281 1.281 12 S 2.692 3.308 13 O -0.962 6.962 14 O -0.952 6.952 15 C -0.710 4.710 16 C 0.221 3.779 17 N -0.493 5.493 18 C 0.156 3.844 19 C -0.190 4.190 20 C 0.101 3.899 21 Cl -0.028 7.028 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.183 0.817 29 H 0.169 0.831 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -10.440 4.994 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.818 5.818 3 C 0.121 3.879 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.207 1.207 12 S 2.776 3.224 13 O -0.952 6.952 14 O -0.942 6.942 15 C -0.795 4.795 16 C 0.063 3.937 17 N -0.203 5.203 18 C -0.001 4.001 19 C -0.211 4.211 20 C 0.065 3.935 21 Cl 0.002 6.998 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.200 0.800 29 H 0.186 0.814 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.341 -10.766 4.445 12.117 hybrid contribution -0.894 0.772 1.746 2.108 sum -4.235 -9.994 6.191 12.495 Atomic orbital electron populations 1.21580 0.79496 1.02757 1.01398 1.57220 1.14294 1.22394 1.87861 1.19310 0.92278 0.78726 0.97603 1.21546 1.36912 1.07072 0.92735 0.92223 1.24912 0.95090 0.96411 0.97168 1.69931 1.36721 1.15008 1.30733 0.86565 0.78086 0.78831 0.84758 1.19869 1.20701 1.20728 1.02177 0.73580 0.73125 0.73524 1.93556 1.62050 1.57501 1.82104 1.93559 1.47707 1.85489 1.67492 1.32221 1.02176 1.17341 1.27768 1.22694 0.92034 0.85378 0.93573 1.67823 1.38701 1.12599 1.01133 1.23080 0.88593 0.89504 0.98899 1.22097 0.98359 1.04943 0.95723 1.20742 0.85979 0.92717 0.94044 1.98426 1.12342 1.95794 1.93261 0.93192 0.91583 0.90817 0.92981 0.93610 0.92502 0.79990 0.81398 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 9.85 59.85 0.59 2.20 16 2 N -0.98 -19.90 3.17 -123.06 -0.39 -20.29 16 3 C 0.24 5.85 5.45 -5.19 -0.03 5.82 16 4 C -0.54 -14.03 9.39 -34.44 -0.32 -14.35 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 7 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 S 2.69 53.06 5.12 -107.50 -0.55 52.51 16 13 O -0.96 -18.87 15.24 -57.17 -0.87 -19.74 16 14 O -0.95 -20.73 15.78 -57.17 -0.90 -21.63 16 15 C -0.71 -12.95 5.93 -39.41 -0.23 -13.18 16 16 C 0.22 3.92 10.71 -17.56 -0.19 3.73 16 17 N -0.49 -8.10 10.36 -13.27 -0.14 -8.24 16 18 C 0.16 2.09 11.18 -17.56 -0.20 1.90 16 19 C -0.19 -2.56 9.94 -39.41 -0.39 -2.95 16 20 C 0.10 1.66 6.35 -39.17 -0.25 1.41 16 21 Cl -0.03 -0.42 23.46 -51.86 -1.22 -1.64 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.05 4.27 -51.93 -0.22 0.83 16 24 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 25 H 0.05 1.35 7.07 -51.93 -0.37 0.99 16 26 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.18 3.06 7.35 -52.49 -0.39 2.67 16 29 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 286.80 15.07 4.32 4.32 Total: -1.00 -30.82 286.80 -7.78 -38.60 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -2.63 Total: -1.81 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.12 Total: -13.72 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.21 Total: -52.63 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.77 Total: -41.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.55 Total: 52.51 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.22 Total: -1.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.82 -7.78 -38.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070588156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.680 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds