Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00009 * 2 1 4 4 C 1.50703 * 109.46736 * 85.72214 * 3 2 1 5 5 H 1.08002 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99785 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99745 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00009 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47006 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47400 * 119.99719 * 8 6 4 11 11 H 1.48501 * 109.47141 * 240.00200 * 8 6 4 12 12 S 1.65603 * 119.99973 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40419 * 14.26507 * 12 2 1 14 14 O 1.42106 * 106.40248 * 147.17983 * 12 2 1 15 15 C 1.76194 * 107.22095 * 260.71988 * 12 2 1 16 16 C 1.38167 * 120.42938 * 247.14443 * 15 12 2 17 17 N 1.31881 * 120.77704 * 179.97438 * 16 15 12 18 18 C 1.31907 * 121.76122 * 0.02562 * 17 16 15 19 19 C 1.38131 * 120.77539 * 0.02562 * 18 17 16 20 20 C 1.38783 * 120.42688 * 66.86220 * 15 12 2 21 21 Cl 1.73602 * 120.80239 * 0.02562 * 20 15 12 22 22 H 1.08993 * 109.47249 * 84.37677 * 1 2 3 23 23 H 1.09005 * 109.46837 * 204.37388 * 1 2 3 24 24 H 1.08993 * 109.47071 * 324.37509 * 1 2 3 25 25 H 1.09001 * 109.47214 * 205.71892 * 3 2 1 26 26 H 1.08992 * 109.47044 * 325.71935 * 3 2 1 27 27 H 0.97000 * 119.99737 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.61008 * 0.02562 * 16 15 12 29 29 H 1.07997 * 119.61097 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.42262 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3568 1.7567 1.4169 5 1 1.9525 1.1797 2.2355 6 6 3.0179 2.9403 1.6682 7 7 3.5098 3.6432 0.6713 8 14 3.2148 3.5456 3.4243 9 1 2.5766 2.5804 4.3550 10 1 4.6592 3.6647 3.7479 11 1 2.5646 4.8731 3.5662 12 16 2.2930 -1.4342 -0.0006 13 8 1.3495 -2.4421 -0.3370 14 8 3.4858 -1.2086 -0.7394 15 6 2.7889 -1.7510 1.6601 16 6 4.1259 -1.7288 2.0076 17 7 4.5047 -1.9644 3.2487 18 6 3.6327 -2.2293 4.2023 19 6 2.2790 -2.2699 3.9308 20 6 1.8410 -2.0203 2.6374 21 17 0.1491 -2.0525 2.2500 22 1 -0.3633 0.1007 -1.0226 23 1 -0.3633 -0.9361 0.4241 24 1 -0.3633 0.8353 0.5986 25 1 3.1810 1.1205 -0.4460 26 1 1.6438 2.0079 -0.5788 27 1 3.9752 4.4757 0.8481 28 1 4.8696 -1.5151 1.2541 29 1 3.9814 -2.4174 5.2070 30 1 1.5700 -2.4877 4.7159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070588156.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -54.743686 kcal Electronic energy + Delta-G solvation = -19676.156177 eV Core-core repulsion = 16431.165752 eV Total energy + Delta-G solvation = -3244.990425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28340 -38.53401 -37.97995 -37.28122 -36.99308 -34.53039 -33.49424 -32.71778 -29.70994 -26.84703 -25.34838 -24.95977 -24.16529 -20.26506 -19.26797 -18.77049 -18.42082 -18.04628 -17.87236 -17.02154 -16.31251 -15.63965 -15.51225 -15.24278 -15.14466 -14.96610 -14.21592 -14.07302 -13.95822 -13.54522 -13.44988 -13.25579 -13.03421 -12.95876 -12.90091 -12.45124 -12.40497 -12.07293 -11.78467 -11.67205 -11.00884 -10.84851 -10.61887 -10.53926 -9.82056 -8.21002 -6.34238 -0.78040 -0.50934 -0.18773 0.53781 1.36882 1.39056 1.48511 1.88358 2.32732 2.39098 2.64152 3.09593 3.13750 3.25404 3.57184 3.80751 3.96574 4.05782 4.30435 4.45324 4.58237 4.68800 4.79316 5.03812 5.25703 5.27587 5.42688 5.68541 5.83236 6.04922 6.56944 6.76737 7.35883 8.87095 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.009197 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.298861 B = 3043.686922 C = 3661.723025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.984 5.984 3 C 0.256 3.744 4 C -0.543 4.543 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.922 5.922 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.276 1.276 12 S 2.700 3.300 13 O -0.964 6.964 14 O -0.983 6.983 15 C -0.729 4.729 16 C 0.204 3.796 17 N -0.508 5.508 18 C 0.162 3.838 19 C -0.177 4.177 20 C 0.082 3.918 21 Cl -0.022 7.022 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.267 0.733 28 H 0.176 0.824 29 H 0.219 0.781 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -11.237 7.751 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.824 5.824 3 C 0.133 3.867 4 C -0.582 4.582 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.561 5.561 8 Si 0.775 3.225 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.202 1.202 12 S 2.788 3.212 13 O -0.955 6.955 14 O -0.974 6.974 15 C -0.817 4.817 16 C 0.047 3.953 17 N -0.218 5.218 18 C 0.006 3.994 19 C -0.197 4.197 20 C 0.047 3.953 21 Cl 0.007 6.993 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.193 0.807 29 H 0.235 0.765 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.199 -11.573 7.164 14.244 hybrid contribution -0.659 0.921 0.957 1.483 sum -4.858 -10.652 8.121 14.249 Atomic orbital electron populations 1.21801 0.77692 1.03591 1.02784 1.57114 1.15520 1.21220 1.88505 1.18882 0.91238 0.79917 0.96658 1.21777 1.36183 1.06857 0.93360 0.91842 1.25694 0.95012 0.96789 1.00793 1.70041 1.37804 1.15560 1.32745 0.85625 0.77850 0.78570 0.80445 1.18783 1.20826 1.20187 1.01624 0.72894 0.72730 0.73993 1.93542 1.62045 1.57121 1.82747 1.93515 1.48837 1.85793 1.69216 1.31827 1.03032 1.19954 1.26901 1.22698 0.91876 0.86288 0.94486 1.67876 1.39788 1.13184 1.00960 1.23978 0.88361 0.87008 1.00072 1.22628 0.99278 1.02571 0.95268 1.21030 0.86011 0.93335 0.94964 1.98420 1.11703 1.95779 1.93389 0.91523 0.90232 0.90582 0.95656 0.94972 0.92413 0.80702 0.76490 0.79044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.89 9.85 127.77 1.26 4.15 16 2 N -0.98 -40.33 3.17 -543.24 -1.72 -42.05 16 3 C 0.26 12.65 5.45 85.63 0.47 13.12 16 4 C -0.54 -28.00 9.39 25.60 0.24 -27.76 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.02 0.92 5.46 84.66 0.46 1.39 16 7 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 8 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 S 2.70 107.63 5.12 -56.49 -0.29 107.34 16 13 O -0.96 -37.58 15.24 -128.00 -1.95 -39.53 16 14 O -0.98 -44.50 15.78 -128.00 -2.02 -46.52 16 15 C -0.73 -26.13 5.93 22.38 0.13 -26.00 16 16 C 0.20 7.20 10.71 84.67 0.91 8.11 16 17 N -0.51 -15.70 10.36 -195.90 -2.03 -17.73 16 18 C 0.16 3.69 11.18 84.66 0.95 4.64 16 19 C -0.18 -4.05 9.94 22.38 0.22 -3.83 16 20 C 0.08 2.52 6.35 22.54 0.14 2.66 16 21 Cl -0.02 -0.63 23.46 -2.72 -0.06 -0.70 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 23 H 0.08 2.44 4.27 -2.38 -0.01 2.43 16 24 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 25 H 0.03 1.38 7.07 -2.39 -0.02 1.36 16 26 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 28 H 0.18 6.14 7.35 -2.91 -0.02 6.12 16 29 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -66.35 286.80 0.19 -66.16 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.17 Total: 4.74 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.78 Total: -23.53 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.47 Total: -111.87 kcal Atomic # 8 Polarization: -82.08 SS G_CDS: -3.97 Total: -86.05 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 107.63 SS G_CDS: -0.29 Total: 107.34 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.06 Total: -0.70 kcal Total: -66.35 0.19 -66.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070588156.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.416 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds