Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99653 * 2 1 4 4 C 1.50693 * 109.47275 * 275.00027 * 3 2 1 5 5 N 1.29027 * 124.91534 * 90.30827 * 4 3 2 6 6 C 1.31784 * 117.12400 * 180.22644 * 5 4 3 7 7 C 1.33641 * 114.49781 * 359.48088 * 6 5 4 8 8 S 1.70983 * 124.91700 * 269.99778 * 4 3 2 9 9 S 1.65592 * 120.00218 * 180.02562 * 2 1 3 10 10 O 1.42095 * 104.27949 * 26.06967 * 9 2 1 11 11 O 1.42103 * 104.28042 * 153.92930 * 9 2 1 12 12 C 1.81399 * 104.44958 * 270.00163 * 9 2 1 13 13 C 1.53001 * 109.47239 * 179.97438 * 12 9 2 14 14 C 1.50702 * 109.47327 * 179.97438 * 13 12 9 15 15 H 1.08006 * 119.99659 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00388 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47210 * 60.00029 * 18 16 14 20 20 H 1.48506 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47204 * 299.99793 * 18 16 14 22 22 H 1.09006 * 109.47325 * 89.99757 * 1 2 3 23 23 H 1.09000 * 109.47356 * 209.99466 * 1 2 3 24 24 H 1.08997 * 109.47186 * 329.99717 * 1 2 3 25 25 H 1.09003 * 109.46931 * 154.99679 * 3 2 1 26 26 H 1.09006 * 109.46792 * 35.00303 * 3 2 1 27 27 H 1.08002 * 122.75368 * 179.75456 * 6 5 4 28 28 H 1.08001 * 126.03830 * 180.26907 * 7 6 5 29 29 H 1.09002 * 109.47083 * 299.99884 * 12 9 2 30 30 H 1.09001 * 109.47371 * 59.99780 * 12 9 2 31 31 H 1.08992 * 109.46996 * 300.00036 * 13 12 9 32 32 H 1.09005 * 109.46761 * 60.00066 * 13 12 9 33 33 H 0.96999 * 119.99645 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7658 -1.4153 5 7 1.5019 2.5408 -2.0148 6 6 1.7779 2.8780 -3.2586 7 6 2.9189 2.3672 -3.7310 8 16 3.6444 1.3903 -2.4567 9 16 2.2930 -1.4340 -0.0006 10 8 1.3971 -2.3558 -0.6062 11 8 3.5395 -1.1188 -0.6057 12 6 2.5193 -1.8268 1.7558 13 6 3.2809 -3.1471 1.8892 14 6 3.4694 -3.4732 3.3484 15 1 3.0842 -2.8056 4.1050 16 6 4.1328 -4.6241 3.7175 17 7 4.6014 -5.4372 2.7962 18 14 4.3658 -5.0285 5.5262 19 1 3.0386 -5.1539 6.1804 20 1 5.1051 -6.3100 5.6556 21 1 5.1397 -3.9430 6.1805 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 3.1857 1.1178 0.4344 26 1 1.6500 2.0043 0.5895 27 1 1.1369 3.5183 -3.8464 28 1 3.3247 2.5252 -4.7193 29 1 3.0866 -1.0296 2.2362 30 1 1.5451 -1.9197 2.2358 31 1 2.7133 -3.9440 1.4088 32 1 4.2551 -3.0547 1.4090 33 1 5.0684 -6.2467 3.0559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072730368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -24.582923 kcal Electronic energy + Delta-G solvation = -18877.375752 eV Core-core repulsion = 15771.569996 eV Total energy + Delta-G solvation = -3105.805755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68122 -36.74230 -36.38047 -35.45787 -33.92363 -31.20760 -31.04594 -28.17886 -25.77925 -25.38148 -23.59893 -21.58703 -20.17369 -18.62629 -18.08817 -17.46142 -16.58081 -16.15590 -15.87866 -15.33051 -14.86733 -14.58323 -14.26770 -13.98737 -13.71162 -13.41340 -12.98527 -12.77892 -12.52582 -12.07552 -11.79999 -11.66852 -11.47743 -11.37317 -11.29381 -11.08809 -10.99693 -10.46920 -10.41135 -9.88365 -9.73686 -9.42444 -9.40468 -9.04987 -8.84101 -8.52327 -6.14643 -4.20632 0.50774 0.77168 1.39110 1.81753 2.67373 3.05953 3.25902 3.30955 3.32578 4.01226 4.25029 4.36516 4.51343 4.60592 4.98324 5.09879 5.20449 5.22923 5.35779 5.43463 5.52960 5.59464 5.62926 5.85965 5.93430 6.06180 6.43707 6.47171 7.26276 7.32131 7.66376 7.77921 8.14396 8.82521 9.44348 10.96291 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.034417 B = 0.003970 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.345211 B = 7050.971298 C = 7272.234915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.004 6.004 3 C 0.203 3.797 4 C 0.017 3.983 5 N -0.468 5.468 6 C 0.030 3.970 7 C -0.280 4.280 8 S 0.191 5.809 9 S 2.581 3.419 10 O -0.958 6.958 11 O -0.958 6.958 12 C -0.587 4.587 13 C 0.028 3.972 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 16.338 -8.254 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.839 5.839 3 C 0.073 3.927 4 C -0.262 4.262 5 N -0.184 5.184 6 C -0.122 4.122 7 C -0.420 4.420 8 S 0.445 5.555 9 S 2.680 3.320 10 O -0.949 6.949 11 O -0.948 6.948 12 C -0.720 4.720 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.280 15.291 -8.687 18.100 hybrid contribution -0.590 0.498 0.867 1.161 sum -4.870 15.790 -7.820 18.281 Atomic orbital electron populations 1.21419 0.78111 1.02878 1.02203 1.57846 1.15560 1.20506 1.90001 1.19695 0.98451 0.86484 0.88058 1.27685 0.95421 1.00064 1.03057 1.66274 1.29716 1.13443 1.08950 1.21750 0.96724 1.02461 0.91270 1.27364 1.02206 1.06554 1.05891 1.84829 1.23893 1.42848 1.03954 1.06135 0.73756 0.72568 0.79581 1.93550 1.64701 1.61590 1.75032 1.93535 1.43644 1.82612 1.75006 1.30476 1.10376 1.10777 1.20386 1.18969 0.94986 0.87068 1.00041 1.20961 1.37338 1.07111 0.90740 0.92053 1.25065 0.95258 0.96057 0.98043 1.69946 1.37169 1.12662 1.33029 0.86524 0.78410 0.77774 0.84535 1.20057 1.21056 1.20048 0.92808 0.90774 0.90916 0.87656 0.87390 0.81120 0.80823 0.86106 0.86158 0.94887 0.94734 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 10.24 59.85 0.61 1.77 16 2 N -1.00 -13.57 3.10 -123.05 -0.38 -13.95 16 3 C 0.20 2.38 5.85 -5.20 -0.03 2.35 16 4 C 0.02 0.22 6.97 -13.46 -0.09 0.13 16 5 N -0.47 -6.18 10.54 -11.86 -0.13 -6.30 16 6 C 0.03 0.34 11.35 -19.18 -0.22 0.12 16 7 C -0.28 -2.97 11.37 29.12 0.33 -2.64 16 8 S 0.19 2.49 22.15 -107.50 -2.38 0.11 16 9 S 2.58 45.26 5.32 -107.50 -0.57 44.68 16 10 O -0.96 -19.83 17.09 -57.54 -0.98 -20.81 16 11 O -0.96 -18.19 15.94 -57.54 -0.92 -19.11 16 12 C -0.59 -10.80 6.12 37.16 0.23 -10.57 16 13 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 14 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 24 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 25 H 0.11 1.10 7.61 -51.93 -0.40 0.71 16 26 H 0.11 0.98 7.96 -51.93 -0.41 0.57 16 27 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -34.22 313.91 -8.76 -42.98 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.13 Total: -1.58 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 0.28 Total: -21.23 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.23 Total: -45.66 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.90 Total: -39.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -2.95 Total: 44.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.22 -8.76 -42.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072730368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.399 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds