Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99653 * 2 1 4 4 C 1.50693 * 109.47275 * 275.00027 * 3 2 1 5 5 N 1.29027 * 124.91534 * 90.30827 * 4 3 2 6 6 C 1.31784 * 117.12400 * 180.22644 * 5 4 3 7 7 C 1.33641 * 114.49781 * 359.48088 * 6 5 4 8 8 S 1.70983 * 124.91700 * 269.99778 * 4 3 2 9 9 S 1.65592 * 120.00218 * 180.02562 * 2 1 3 10 10 O 1.42095 * 104.27949 * 26.06967 * 9 2 1 11 11 O 1.42103 * 104.28042 * 153.92930 * 9 2 1 12 12 C 1.81399 * 104.44958 * 270.00163 * 9 2 1 13 13 C 1.53001 * 109.47239 * 179.97438 * 12 9 2 14 14 C 1.50702 * 109.47327 * 179.97438 * 13 12 9 15 15 H 1.08006 * 119.99659 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00388 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47210 * 60.00029 * 18 16 14 20 20 H 1.48506 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47204 * 299.99793 * 18 16 14 22 22 H 1.09006 * 109.47325 * 89.99757 * 1 2 3 23 23 H 1.09000 * 109.47356 * 209.99466 * 1 2 3 24 24 H 1.08997 * 109.47186 * 329.99717 * 1 2 3 25 25 H 1.09003 * 109.46931 * 154.99679 * 3 2 1 26 26 H 1.09006 * 109.46792 * 35.00303 * 3 2 1 27 27 H 1.08002 * 122.75368 * 179.75456 * 6 5 4 28 28 H 1.08001 * 126.03830 * 180.26907 * 7 6 5 29 29 H 1.09002 * 109.47083 * 299.99884 * 12 9 2 30 30 H 1.09001 * 109.47371 * 59.99780 * 12 9 2 31 31 H 1.08992 * 109.46996 * 300.00036 * 13 12 9 32 32 H 1.09005 * 109.46761 * 60.00066 * 13 12 9 33 33 H 0.96999 * 119.99645 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7658 -1.4153 5 7 1.5019 2.5408 -2.0148 6 6 1.7779 2.8780 -3.2586 7 6 2.9189 2.3672 -3.7310 8 16 3.6444 1.3903 -2.4567 9 16 2.2930 -1.4340 -0.0006 10 8 1.3971 -2.3558 -0.6062 11 8 3.5395 -1.1188 -0.6057 12 6 2.5193 -1.8268 1.7558 13 6 3.2809 -3.1471 1.8892 14 6 3.4694 -3.4732 3.3484 15 1 3.0842 -2.8056 4.1050 16 6 4.1328 -4.6241 3.7175 17 7 4.6014 -5.4372 2.7962 18 14 4.3658 -5.0285 5.5262 19 1 3.0386 -5.1539 6.1804 20 1 5.1051 -6.3100 5.6556 21 1 5.1397 -3.9430 6.1805 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 3.1857 1.1178 0.4344 26 1 1.6500 2.0043 0.5895 27 1 1.1369 3.5183 -3.8464 28 1 3.3247 2.5252 -4.7193 29 1 3.0866 -1.0296 2.2362 30 1 1.5451 -1.9197 2.2358 31 1 2.7133 -3.9440 1.4088 32 1 4.2551 -3.0547 1.4090 33 1 5.0684 -6.2467 3.0559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072730368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -49.944361 kcal Electronic energy + Delta-G solvation = -18878.475506 eV Core-core repulsion = 15771.569996 eV Total energy + Delta-G solvation = -3106.905510 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58920 -38.22987 -37.44911 -36.92433 -35.87789 -33.11464 -31.97417 -29.08526 -27.60790 -26.49245 -24.58538 -23.43234 -21.10409 -19.91390 -19.16880 -18.87358 -18.25751 -17.42657 -17.16288 -16.52773 -16.44673 -16.09245 -15.30615 -15.10783 -14.87321 -14.64026 -14.44904 -13.94445 -13.81616 -13.70931 -13.26880 -13.17521 -12.89065 -12.79017 -12.62657 -12.52338 -12.26441 -12.21298 -12.12249 -11.72993 -11.18943 -10.74332 -10.62306 -10.35370 -10.18064 -9.85975 -8.24489 -6.38594 -0.79932 -0.24846 0.47347 0.90964 1.42695 1.45840 1.53925 1.62364 1.98008 2.39638 2.82906 3.09010 3.15394 3.18503 3.62920 4.02911 4.11306 4.13603 4.35970 4.41530 4.56184 4.59643 4.66106 4.76913 4.92853 4.99330 5.23397 5.27758 5.29552 5.46711 5.69767 6.07467 6.73963 6.75110 7.31759 8.87472 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.034417 B = 0.003970 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.345211 B = 7050.971298 C = 7272.234915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.993 5.993 3 C 0.193 3.807 4 C 0.007 3.993 5 N -0.477 5.477 6 C 0.017 3.983 7 C -0.261 4.261 8 S 0.135 5.865 9 S 2.602 3.398 10 O -0.995 6.995 11 O -0.976 6.976 12 C -0.584 4.584 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.077 0.923 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.201 0.799 28 H 0.204 0.796 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.003 0.997 32 H 0.010 0.990 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 18.480 -7.292 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.831 5.831 3 C 0.065 3.935 4 C -0.272 4.272 5 N -0.193 5.193 6 C -0.134 4.134 7 C -0.401 4.401 8 S 0.388 5.612 9 S 2.700 3.300 10 O -0.985 6.985 11 O -0.966 6.966 12 C -0.716 4.716 13 C -0.018 4.018 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.186 1.186 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.125 0.875 25 H 0.133 0.867 26 H 0.159 0.841 27 H 0.218 0.782 28 H 0.221 0.779 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.303 17.449 -7.722 19.805 hybrid contribution -0.321 -0.059 0.449 0.555 sum -5.624 17.390 -7.273 19.671 Atomic orbital electron populations 1.21658 0.76649 1.04757 1.02250 1.57443 1.16282 1.19712 1.89618 1.20072 0.99425 0.85990 0.88024 1.27879 0.95263 1.00533 1.03557 1.66302 1.29699 1.13415 1.09865 1.22274 0.97339 1.02818 0.90970 1.27653 1.01477 1.04786 1.06159 1.85033 1.25471 1.44543 1.06149 1.05231 0.73161 0.72931 0.78680 1.93499 1.65646 1.63750 1.75608 1.93509 1.44898 1.83055 1.75119 1.30355 1.10915 1.08028 1.22305 1.18820 0.94301 0.89806 0.98906 1.21502 1.36860 1.07411 0.92089 0.90472 1.26105 0.94946 0.96034 1.03069 1.70099 1.38373 1.13328 1.35593 0.85384 0.78844 0.77642 0.78518 1.18810 1.21109 1.18649 0.93753 0.90473 0.87487 0.86727 0.84070 0.78193 0.77886 0.83415 0.84088 0.97854 0.97205 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 10.24 127.77 1.31 3.23 16 2 N -0.99 -25.09 3.10 -543.21 -1.68 -26.77 16 3 C 0.19 4.11 5.85 85.63 0.50 4.62 16 4 C 0.01 0.16 6.97 88.52 0.62 0.78 16 5 N -0.48 -11.54 10.54 -191.45 -2.02 -13.56 16 6 C 0.02 0.34 11.35 83.66 0.95 1.29 16 7 C -0.26 -5.02 11.37 66.78 0.76 -4.26 16 8 S 0.14 3.45 22.15 -56.49 -1.25 2.20 16 9 S 2.60 90.89 5.32 -56.49 -0.30 90.59 16 10 O -0.99 -41.83 17.09 -127.65 -2.18 -44.02 16 11 O -0.98 -37.53 15.94 -127.65 -2.04 -39.56 16 12 C -0.58 -21.06 6.12 71.98 0.44 -20.62 16 13 C 0.02 1.06 4.98 29.85 0.15 1.20 16 14 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 15 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 17 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 18 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.08 1.58 7.79 -2.39 -0.02 1.57 16 24 H 0.11 1.53 7.94 -2.39 -0.02 1.51 16 25 H 0.11 2.20 7.61 -2.39 -0.02 2.18 16 26 H 0.14 2.06 7.96 -2.38 -0.02 2.04 16 27 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.15 4.47 8.14 -2.39 -0.02 4.45 16 30 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.48 313.91 -0.63 -76.11 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.11 Total: 9.04 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 5.42 Total: -42.57 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -3.42 Total: -96.41 kcal Atomic # 8 Polarization: -79.36 SS G_CDS: -4.22 Total: -83.58 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 94.34 SS G_CDS: -1.55 Total: 92.79 kcal Total: -75.48 -0.63 -76.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072730368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.164 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds