Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46704 * 2 1 4 4 C 1.50697 * 109.47232 * 119.99820 * 2 1 3 5 5 H 1.08000 * 120.00039 * 120.00405 * 4 2 1 6 6 C 1.37879 * 120.00123 * 300.00557 * 4 2 1 7 7 N 1.31514 * 119.99917 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99863 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47313 * 89.99751 * 8 6 4 10 10 H 1.48496 * 109.47060 * 209.99630 * 8 6 4 11 11 H 1.48500 * 109.47089 * 329.99803 * 8 6 4 12 12 N 1.46492 * 109.47164 * 240.00226 * 2 1 3 13 13 C 1.46493 * 120.00102 * 299.99715 * 12 2 1 14 14 C 1.34783 * 120.00150 * 119.99609 * 12 2 1 15 15 O 1.21718 * 119.99829 * 0.02562 * 14 12 2 16 16 C 1.46538 * 120.00369 * 179.97438 * 14 12 2 17 17 C 1.37963 * 126.22459 * 189.61355 * 16 14 12 18 18 C 1.39789 * 107.12526 * 179.84519 * 17 16 14 19 19 Cl 1.73606 * 126.06100 * 180.15336 * 18 17 16 20 20 C 1.35720 * 107.88020 * 0.41826 * 18 17 16 21 21 Cl 1.73599 * 125.58686 * 179.71600 * 20 18 17 22 22 N 1.35664 * 108.82930 * 359.73834 * 20 18 17 23 23 H 0.96996 * 125.69412 * 179.97438 * 22 20 18 24 24 H 1.09004 * 109.46704 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47516 * 60.00375 * 1 2 3 26 26 H 1.09001 * 109.47374 * 299.99539 * 1 2 3 27 27 H 0.97005 * 119.99727 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47610 * 96.26678 * 13 12 2 29 29 H 1.09009 * 109.47390 * 216.26854 * 13 12 2 30 30 H 1.08999 * 109.47199 * 336.26494 * 13 12 2 31 31 H 1.07991 * 126.43530 * 359.96267 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5439 4.4119 10 1 1.3445 -0.9490 5.1123 11 1 2.4881 -2.5653 3.7121 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0930 -1.4280 14 6 2.7931 -0.0355 -2.0834 15 8 3.0875 1.1297 -1.8905 16 6 3.2821 -0.7263 -3.2796 17 6 4.2229 -0.2497 -4.1690 18 6 4.3914 -1.2278 -5.1534 19 17 5.4667 -1.1346 -6.5132 20 6 3.5612 -2.2608 -4.8609 21 17 3.3956 -3.7181 -5.7897 22 7 2.8814 -1.9678 -3.7239 23 1 2.2231 -2.5369 -3.2956 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 0.7093 1.1617 3.4844 28 1 0.8015 -2.1452 -2.0918 29 1 2.5076 -2.6094 -1.8871 30 1 1.4212 -2.5683 -0.4777 31 1 4.7345 0.6997 -4.1140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = -0.256796 kcal Electronic energy + Delta-G solvation = -18655.418954 eV Core-core repulsion = 15410.747551 eV Total energy + Delta-G solvation = -3244.671403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.78937 -40.30084 -37.90354 -37.53149 -37.33262 -34.97085 -32.59710 -31.61796 -29.83264 -28.02433 -27.31291 -24.60556 -22.48438 -21.78872 -21.37762 -18.93548 -18.50547 -17.72980 -17.12437 -16.74784 -16.14948 -15.81858 -15.64525 -15.03142 -14.66725 -14.46085 -14.40331 -14.15289 -13.59303 -13.14879 -13.00774 -12.95504 -12.83473 -12.72086 -12.69147 -12.45401 -12.21721 -12.12397 -11.95272 -11.24578 -11.06429 -10.53760 -10.17221 -9.60941 -9.29193 -8.16207 -6.32799 0.09555 0.32787 1.03724 1.08650 1.42581 1.44593 1.53394 1.93471 2.15729 2.35782 2.45976 3.12919 3.45850 3.76588 3.94944 4.24064 4.37882 4.49273 4.67726 4.83131 4.87092 4.99966 5.06420 5.24674 5.42954 5.50992 5.62944 5.86562 5.98821 6.12031 6.59647 6.73642 7.12474 7.39314 8.88359 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.027464 B = 0.003992 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.272346 B = 7012.901497 C = 7298.749436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.261 1.261 12 N -0.592 5.592 13 C 0.055 3.945 14 C 0.571 3.429 15 O -0.579 6.579 16 C -0.015 4.015 17 C -0.098 4.098 18 C -0.106 4.106 19 Cl -0.022 7.022 20 C 0.099 3.901 21 Cl 0.023 6.977 22 N -0.513 5.513 23 H 0.442 0.558 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -11.275 -15.776 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.185 1.185 12 N -0.321 5.321 13 C -0.088 4.088 14 C 0.359 3.641 15 O -0.460 6.460 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.141 4.141 19 Cl 0.006 6.994 20 C -0.046 4.046 21 Cl 0.052 6.948 22 N -0.124 5.124 23 H 0.294 0.706 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.919 -10.804 -15.580 19.183 hybrid contribution 0.023 -0.353 1.004 1.065 sum 2.943 -11.158 -14.576 18.591 Atomic orbital electron populations 1.21893 0.96620 1.00439 1.00221 1.18662 0.91914 0.92446 0.80900 0.96658 1.21537 1.32145 1.13313 0.90924 0.91869 1.25688 0.94948 0.95585 1.01915 1.70012 1.37046 1.23733 1.24539 0.85473 0.77725 0.79255 0.78662 1.21004 1.20668 1.18487 1.48150 1.48454 1.12954 1.22546 1.22291 1.00495 0.81274 1.04694 1.17341 0.78925 0.85775 0.82011 1.90803 1.60159 1.17800 1.77227 1.20158 1.05519 0.87776 0.99486 1.21216 0.98636 1.00230 0.92339 1.19604 1.02015 0.96161 0.96316 1.98336 1.62141 1.98175 1.40706 1.20757 1.00132 0.92603 0.91111 1.98425 1.96987 1.30867 1.68567 1.43179 1.33960 1.15758 1.19469 0.70643 0.93081 0.95950 0.91177 0.92555 0.89978 0.90190 0.88759 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.97 71.98 0.65 -5.42 16 2 C 0.26 13.03 2.63 44.25 0.12 13.14 16 3 H 0.02 0.92 6.90 -2.39 -0.02 0.91 16 4 C -0.54 -28.05 7.95 25.60 0.20 -27.84 16 5 H 0.06 3.16 7.44 -2.91 -0.02 3.14 16 6 C 0.02 0.99 5.30 84.66 0.45 1.44 16 7 N -0.91 -51.05 11.32 21.45 0.24 -50.80 16 8 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 N -0.59 -23.67 2.75 -831.68 -2.29 -25.95 16 13 C 0.06 1.52 7.81 127.77 1.00 2.52 16 14 C 0.57 23.40 7.64 86.41 0.66 24.06 16 15 O -0.58 -29.03 16.22 -4.41 -0.07 -29.10 16 16 C -0.02 -0.47 6.65 40.30 0.27 -0.20 16 17 C -0.10 -2.83 10.65 22.58 0.24 -2.59 16 18 C -0.11 -2.62 6.66 22.06 0.15 -2.47 16 19 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 16 20 C 0.10 2.19 7.75 83.52 0.65 2.84 16 21 Cl 0.02 0.39 29.13 -2.72 -0.08 0.31 16 22 N -0.51 -11.90 5.06 -174.51 -0.88 -12.78 16 23 H 0.44 8.11 4.92 -92.71 -0.46 7.65 16 24 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 28 H 0.08 1.74 7.72 -2.39 -0.02 1.72 16 29 H 0.08 1.79 5.18 -2.38 -0.01 1.78 16 30 H 0.09 2.77 7.12 -2.39 -0.02 2.75 16 31 H 0.16 4.70 8.06 -2.92 -0.02 4.68 16 Total: -1.00 -64.10 294.02 3.97 -60.13 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.73 Total: 9.69 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 4.38 Total: 5.47 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.93 Total: -89.54 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.07 Total: -29.10 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.16 Total: -0.24 kcal Total: -64.10 3.97 -60.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.869 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds