Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47203 * 2 1 4 4 C 1.50694 * 109.47059 * 239.99787 * 2 1 3 5 5 H 1.08009 * 119.99843 * 240.00114 * 4 2 1 6 6 C 1.37873 * 120.00154 * 60.00223 * 4 2 1 7 7 N 1.31515 * 120.00052 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47144 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47289 * 120.00217 * 8 6 4 11 11 H 1.48506 * 109.46988 * 240.00107 * 8 6 4 12 12 N 1.46500 * 109.46792 * 119.99620 * 2 1 3 13 13 C 1.46508 * 119.99930 * 60.00164 * 12 2 1 14 14 C 1.34775 * 119.99980 * 239.99845 * 12 2 1 15 15 O 1.21708 * 120.00148 * 0.81561 * 14 12 2 16 16 C 1.46545 * 119.99941 * 180.81160 * 14 12 2 17 17 C 1.37960 * 126.22373 * 168.56388 * 16 14 12 18 18 C 1.39791 * 107.12943 * 179.97438 * 17 16 14 19 19 Cl 1.73596 * 126.06405 * 179.97438 * 18 17 16 20 20 C 1.35720 * 107.87628 * 0.02562 * 18 17 16 21 21 Cl 1.73605 * 125.58780 * 179.97438 * 20 18 17 22 22 N 1.35665 * 108.83201 * 0.25787 * 20 18 17 23 23 H 0.96998 * 125.69919 * 179.73789 * 22 20 18 24 24 H 1.08999 * 109.47175 * 300.00691 * 1 2 3 25 25 H 1.09001 * 109.46784 * 60.00275 * 1 2 3 26 26 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99970 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47085 * 263.46053 * 13 12 2 29 29 H 1.08998 * 109.46784 * 23.45766 * 13 12 2 30 30 H 1.08998 * 109.46945 * 143.45911 * 13 12 2 31 31 H 1.07994 * 126.43317 * 359.93515 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0182 -0.6905 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0749 1.1339 1.8983 16 6 3.2961 -0.7314 3.2709 17 6 4.2640 -0.2684 4.1382 18 6 4.4344 -1.2447 5.1241 19 17 5.5368 -1.1638 6.4627 20 6 3.5859 -2.2675 4.8487 21 17 3.4202 -3.7220 5.7819 22 7 2.8928 -1.9699 3.7210 23 1 2.2232 -2.5335 3.3029 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7096 1.1617 -3.4844 28 1 0.8042 -2.1453 2.0957 29 1 1.4162 -2.5670 0.4784 30 1 2.5090 -2.6107 1.8828 31 1 4.7914 0.6714 4.0683 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442492.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = -0.723786 kcal Electronic energy + Delta-G solvation = -18655.699991 eV Core-core repulsion = 15411.008339 eV Total energy + Delta-G solvation = -3244.691653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.033 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.78733 -40.30230 -37.90291 -37.53147 -37.33204 -34.97015 -32.59362 -31.62095 -29.83255 -28.02007 -27.31550 -24.60570 -22.48402 -21.78973 -21.37501 -18.93882 -18.50520 -17.73517 -17.12716 -16.74444 -16.14649 -15.81667 -15.64693 -15.03599 -14.66673 -14.46190 -14.40432 -14.14890 -13.59777 -13.15412 -13.01987 -12.95737 -12.82740 -12.70644 -12.68471 -12.45483 -12.22901 -12.13181 -11.95362 -11.23378 -11.06373 -10.54332 -10.17176 -9.60822 -9.29191 -8.16486 -6.33009 0.09802 0.32814 1.03726 1.08676 1.41476 1.44358 1.54358 1.93484 2.14976 2.36130 2.45831 3.12670 3.46070 3.76626 3.95623 4.24061 4.38027 4.49328 4.67838 4.83254 4.86991 4.99890 5.06497 5.24670 5.42933 5.51011 5.62979 5.86663 5.98759 6.11935 6.59648 6.73698 7.12440 7.39216 8.88292 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.003995 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.777287 B = 7007.584104 C = 7281.500944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.592 5.592 13 C 0.055 3.945 14 C 0.571 3.429 15 O -0.579 6.579 16 C -0.015 4.015 17 C -0.098 4.098 18 C -0.106 4.106 19 Cl -0.022 7.022 20 C 0.099 3.901 21 Cl 0.023 6.977 22 N -0.513 5.513 23 H 0.442 0.558 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.265 0.735 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -11.289 15.721 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.321 5.321 13 C -0.088 4.088 14 C 0.360 3.640 15 O -0.460 6.460 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.141 4.141 19 Cl 0.006 6.994 20 C -0.046 4.046 21 Cl 0.051 6.949 22 N -0.123 5.123 23 H 0.293 0.707 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.022 -10.815 15.532 19.166 hybrid contribution 0.002 -0.355 -1.004 1.065 sum 3.024 -11.170 14.527 18.573 Atomic orbital electron populations 1.21892 0.96628 1.00440 1.00222 1.18668 0.91921 0.92455 0.80897 0.96639 1.21566 1.32096 1.13253 0.90917 0.91879 1.25687 0.94973 0.95569 1.01919 1.70017 1.37125 1.23717 1.24480 0.85416 0.78182 0.78479 0.78975 1.18920 1.20019 1.21321 1.48157 1.48433 1.12977 1.22538 1.22290 1.00503 0.81265 1.04696 1.17338 0.78937 0.85832 0.81938 1.90800 1.60582 1.17473 1.77128 1.20162 1.04975 0.87947 0.99839 1.21214 0.98305 1.00305 0.92627 1.19601 1.01287 0.96498 0.96702 1.98336 1.60300 1.98232 1.42482 1.20755 0.99767 0.92743 0.91341 1.98426 1.97024 1.31081 1.68321 1.43152 1.33301 1.15887 1.19983 0.70674 0.95946 0.91186 0.93078 0.92558 0.89979 0.88759 0.90204 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.97 71.98 0.65 -5.43 16 2 C 0.26 13.01 2.63 44.24 0.12 13.13 16 3 H 0.02 0.94 6.90 -2.38 -0.02 0.92 16 4 C -0.54 -28.00 7.95 25.60 0.20 -27.80 16 5 H 0.06 3.16 7.45 -2.91 -0.02 3.14 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -51.01 11.32 21.45 0.24 -50.77 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 N -0.59 -23.67 2.75 -831.66 -2.29 -25.96 16 13 C 0.06 1.52 7.81 127.77 1.00 2.52 16 14 C 0.57 23.40 7.64 86.41 0.66 24.06 16 15 O -0.58 -29.01 16.23 -4.38 -0.07 -29.08 16 16 C -0.01 -0.47 6.64 40.30 0.27 -0.20 16 17 C -0.10 -2.84 10.66 22.58 0.24 -2.60 16 18 C -0.11 -2.62 6.66 22.06 0.15 -2.47 16 19 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.55 16 20 C 0.10 2.19 7.75 83.52 0.65 2.84 16 21 Cl 0.02 0.39 29.13 -2.72 -0.08 0.31 16 22 N -0.51 -11.90 5.05 -174.50 -0.88 -12.78 16 23 H 0.44 8.10 4.96 -92.71 -0.46 7.64 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 26 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 27 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.08 1.74 7.71 -2.39 -0.02 1.72 16 29 H 0.09 2.77 7.13 -2.39 -0.02 2.75 16 30 H 0.08 1.79 5.20 -2.39 -0.01 1.78 16 31 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -64.13 294.06 3.97 -60.15 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.73 Total: 9.56 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.38 Total: 5.48 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -2.93 Total: -89.51 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.07 Total: -29.08 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.16 Total: -0.24 kcal Total: -64.13 3.97 -60.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442492.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.429 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds