Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00370 * 2 1 4 4 C 1.50706 * 109.47093 * 275.00257 * 3 2 1 5 5 C 1.33635 * 122.75319 * 94.73023 * 4 3 2 6 6 S 1.76192 * 107.92524 * 179.97438 * 5 4 3 7 7 C 1.70976 * 90.28427 * 0.27803 * 6 5 4 8 8 N 1.29027 * 110.16712 * 359.83656 * 7 6 5 9 9 S 1.65602 * 119.99539 * 179.97438 * 2 1 3 10 10 O 1.42102 * 104.27972 * 26.07374 * 9 2 1 11 11 O 1.42101 * 104.27509 * 153.92941 * 9 2 1 12 12 C 1.81402 * 104.45108 * 269.99677 * 9 2 1 13 13 C 1.52994 * 109.47242 * 179.97438 * 12 9 2 14 14 C 1.50700 * 109.47190 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47202 * 60.00116 * 18 16 14 20 20 H 1.48507 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47280 * 300.00085 * 18 16 14 22 22 H 1.09000 * 109.47060 * 89.99750 * 1 2 3 23 23 H 1.08994 * 109.47612 * 210.00160 * 1 2 3 24 24 H 1.09004 * 109.47210 * 330.00152 * 1 2 3 25 25 H 1.09000 * 109.47314 * 154.99985 * 3 2 1 26 26 H 1.09002 * 109.46979 * 34.99771 * 3 2 1 27 27 H 1.08001 * 126.03202 * 0.03585 * 5 4 3 28 28 H 1.08001 * 124.91761 * 179.84059 * 7 6 5 29 29 H 1.08993 * 109.47106 * 300.00399 * 12 9 2 30 30 H 1.09002 * 109.46579 * 60.00301 * 12 9 2 31 31 H 1.09004 * 109.47269 * 300.00697 * 13 12 9 32 32 H 1.09002 * 109.47031 * 60.00647 * 13 12 9 33 33 H 0.96998 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7656 -1.4155 5 6 1.4902 2.6363 -1.9661 6 16 2.0225 2.9449 -3.6171 7 6 3.3320 1.8661 -3.4056 8 7 3.3134 1.3722 -2.2138 9 16 2.2929 -1.4342 0.0006 10 8 1.3968 -2.3564 -0.6042 11 8 3.5394 -1.1195 -0.6047 12 6 2.5193 -1.8254 1.7574 13 6 3.2807 -3.1457 1.8919 14 6 3.4682 -3.4710 3.3514 15 1 3.0825 -2.8031 4.1074 16 6 4.1322 -4.6212 3.7215 17 7 4.6023 -5.4343 2.8009 18 14 4.3640 -5.0248 5.5306 19 1 3.0363 -5.1511 6.1837 20 1 5.1042 -6.3056 5.6612 21 1 5.1363 -3.9383 6.1852 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 3.1858 1.1176 0.4343 26 1 1.6502 2.0042 0.5894 27 1 0.6288 3.0743 -1.4838 28 1 4.0683 1.6321 -4.1603 29 1 3.0866 -1.0279 2.2371 30 1 1.5450 -1.9178 2.2375 31 1 2.7130 -3.9430 1.4123 32 1 4.2549 -3.0538 1.4118 33 1 5.0691 -6.2438 3.0613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111333261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = -22.335232 kcal Electronic energy + Delta-G solvation = -18919.863909 eV Core-core repulsion = 15814.155621 eV Total energy + Delta-G solvation = -3105.708288 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93313 -36.50885 -36.09257 -35.24946 -33.85419 -31.13204 -31.01896 -27.94316 -25.64868 -25.26586 -24.26576 -21.51530 -19.83547 -18.54995 -18.10934 -17.41929 -16.46614 -16.08476 -15.84411 -15.35227 -14.73134 -14.53799 -14.27176 -13.93243 -13.43600 -13.31111 -13.13775 -12.82055 -12.47261 -12.15124 -11.74136 -11.71350 -11.43152 -11.22221 -11.12323 -11.04595 -10.92722 -10.38380 -10.34295 -9.75645 -9.62208 -9.55599 -9.35647 -9.07145 -8.80431 -8.47811 -6.09851 -4.15631 0.57240 0.84395 1.28856 1.60905 2.65411 3.22535 3.28606 3.33302 3.35189 4.12193 4.35733 4.46503 4.68811 4.71524 4.90322 5.12336 5.15575 5.24972 5.37721 5.49490 5.51673 5.68619 5.71048 5.78542 5.97164 6.03059 6.52717 6.61858 7.33361 7.39796 7.73193 7.82694 8.20278 8.87527 9.48877 11.01146 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.003702 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.079380 B = 7560.775610 C = 7712.285742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.005 6.005 3 C 0.199 3.801 4 C 0.050 3.950 5 C -0.243 4.243 6 S 0.092 5.908 7 C 0.026 3.974 8 N -0.434 5.434 9 S 2.583 3.417 10 O -0.966 6.966 11 O -0.938 6.938 12 C -0.591 4.591 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.177 0.823 28 H 0.199 0.801 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 18.872 -9.048 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.840 5.840 3 C 0.071 3.929 4 C -0.084 4.084 5 C -0.383 4.383 6 S 0.344 5.656 7 C -0.274 4.274 8 N -0.146 5.146 9 S 2.680 3.320 10 O -0.956 6.956 11 O -0.928 6.928 12 C -0.724 4.724 13 C -0.010 4.010 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.194 0.806 28 H 0.216 0.784 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.668 18.482 -10.568 22.629 hybrid contribution -0.094 -0.392 2.302 2.337 sum -7.762 18.090 -8.266 21.350 Atomic orbital electron populations 1.21412 0.78867 1.02832 1.01854 1.57876 1.14890 1.21111 1.90101 1.19689 0.98224 0.85878 0.89154 1.20901 0.91606 0.96678 0.99255 1.26879 1.06703 1.07178 0.97540 1.83957 1.24801 1.44269 1.12611 1.28588 1.02078 0.98836 0.97872 1.66251 1.23067 1.22793 1.02522 1.06109 0.74072 0.72563 0.79236 1.93531 1.65199 1.61871 1.75028 1.93624 1.42898 1.82049 1.74248 1.30508 1.10038 1.10616 1.21246 1.18949 0.95019 0.87163 0.99905 1.20973 1.37180 1.07054 0.90824 0.92114 1.25069 0.95305 0.96103 0.97999 1.69947 1.37220 1.12671 1.33010 0.86531 0.78362 0.77748 0.84625 1.20093 1.21069 1.20070 0.93014 0.90753 0.91326 0.88031 0.88708 0.80596 0.78413 0.86312 0.86498 0.94975 0.94781 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.24 59.85 0.61 1.67 16 2 N -1.00 -13.97 3.10 -123.06 -0.38 -14.35 16 3 C 0.20 2.39 5.72 -5.19 -0.03 2.36 16 4 C 0.05 0.65 6.32 -84.22 -0.53 0.12 16 5 C -0.24 -2.40 11.11 29.12 0.32 -2.08 16 6 S 0.09 0.82 23.22 -107.50 -2.50 -1.67 16 7 C 0.03 0.29 12.23 51.58 0.63 0.93 16 8 N -0.43 -6.59 10.07 -11.89 -0.12 -6.71 16 9 S 2.58 48.84 5.32 -107.50 -0.57 48.27 16 10 O -0.97 -21.05 17.09 -57.54 -0.98 -22.03 16 11 O -0.94 -20.29 16.53 -57.54 -0.95 -21.24 16 12 C -0.59 -11.58 6.12 37.15 0.23 -11.35 16 13 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 14 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 18 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 24 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 25 H 0.10 1.28 7.61 -51.93 -0.40 0.89 16 26 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 27 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 30 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -37.05 314.89 -8.48 -45.53 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.12 Total: -1.70 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 0.68 Total: -21.10 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.24 Total: -47.13 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.93 Total: -43.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 49.67 SS G_CDS: -3.07 Total: 46.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.05 -8.48 -45.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111333261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.195 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds