Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00370 * 2 1 4 4 C 1.50706 * 109.47093 * 275.00257 * 3 2 1 5 5 C 1.33635 * 122.75319 * 94.73023 * 4 3 2 6 6 S 1.76192 * 107.92524 * 179.97438 * 5 4 3 7 7 C 1.70976 * 90.28427 * 0.27803 * 6 5 4 8 8 N 1.29027 * 110.16712 * 359.83656 * 7 6 5 9 9 S 1.65602 * 119.99539 * 179.97438 * 2 1 3 10 10 O 1.42102 * 104.27972 * 26.07374 * 9 2 1 11 11 O 1.42101 * 104.27509 * 153.92941 * 9 2 1 12 12 C 1.81402 * 104.45108 * 269.99677 * 9 2 1 13 13 C 1.52994 * 109.47242 * 179.97438 * 12 9 2 14 14 C 1.50700 * 109.47190 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99959 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47202 * 60.00116 * 18 16 14 20 20 H 1.48507 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47280 * 300.00085 * 18 16 14 22 22 H 1.09000 * 109.47060 * 89.99750 * 1 2 3 23 23 H 1.08994 * 109.47612 * 210.00160 * 1 2 3 24 24 H 1.09004 * 109.47210 * 330.00152 * 1 2 3 25 25 H 1.09000 * 109.47314 * 154.99985 * 3 2 1 26 26 H 1.09002 * 109.46979 * 34.99771 * 3 2 1 27 27 H 1.08001 * 126.03202 * 0.03585 * 5 4 3 28 28 H 1.08001 * 124.91761 * 179.84059 * 7 6 5 29 29 H 1.08993 * 109.47106 * 300.00399 * 12 9 2 30 30 H 1.09002 * 109.46579 * 60.00301 * 12 9 2 31 31 H 1.09004 * 109.47269 * 300.00697 * 13 12 9 32 32 H 1.09002 * 109.47031 * 60.00647 * 13 12 9 33 33 H 0.96998 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3414 1.7656 -1.4155 5 6 1.4902 2.6363 -1.9661 6 16 2.0225 2.9449 -3.6171 7 6 3.3320 1.8661 -3.4056 8 7 3.3134 1.3722 -2.2138 9 16 2.2929 -1.4342 0.0006 10 8 1.3968 -2.3564 -0.6042 11 8 3.5394 -1.1195 -0.6047 12 6 2.5193 -1.8254 1.7574 13 6 3.2807 -3.1457 1.8919 14 6 3.4682 -3.4710 3.3514 15 1 3.0825 -2.8031 4.1074 16 6 4.1322 -4.6212 3.7215 17 7 4.6023 -5.4343 2.8009 18 14 4.3640 -5.0248 5.5306 19 1 3.0363 -5.1511 6.1837 20 1 5.1042 -6.3056 5.6612 21 1 5.1363 -3.9383 6.1852 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 3.1858 1.1176 0.4343 26 1 1.6502 2.0042 0.5894 27 1 0.6288 3.0743 -1.4838 28 1 4.0683 1.6321 -4.1603 29 1 3.0866 -1.0279 2.2371 30 1 1.5450 -1.9178 2.2375 31 1 2.7130 -3.9430 1.4123 32 1 4.2549 -3.0538 1.4118 33 1 5.0691 -6.2438 3.0613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111333261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = -51.094951 kcal Electronic energy + Delta-G solvation = -18921.111024 eV Core-core repulsion = 15814.155621 eV Total energy + Delta-G solvation = -3106.955403 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78306 -38.12179 -37.16098 -36.81093 -35.89343 -33.12510 -31.88438 -28.77743 -27.61069 -26.20447 -25.24618 -23.45678 -20.73710 -19.80853 -19.09781 -18.93042 -18.23361 -17.34271 -17.08244 -16.54127 -16.52920 -15.97017 -15.33615 -15.07936 -14.80245 -14.46786 -14.17027 -14.00944 -13.86831 -13.71902 -13.23346 -13.08621 -12.89808 -12.80040 -12.75565 -12.53207 -12.23924 -12.16304 -12.11115 -11.74273 -11.15470 -10.64436 -10.46650 -10.35116 -10.07289 -9.77539 -8.25951 -6.40953 -0.69854 -0.15713 0.56540 0.82719 1.40601 1.44770 1.52908 1.62421 2.09716 2.38354 2.92766 3.06966 3.23963 3.40719 3.76793 4.06439 4.11428 4.15025 4.33706 4.46633 4.61444 4.66620 4.72315 4.75639 4.98851 5.02699 5.18573 5.25450 5.26509 5.63627 5.67509 6.05297 6.72653 6.94101 7.29409 8.86285 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.003702 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.079380 B = 7560.775610 C = 7712.285742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.993 5.993 3 C 0.191 3.809 4 C 0.014 3.986 5 C -0.230 4.230 6 S 0.154 5.846 7 C -0.001 4.001 8 N -0.493 5.493 9 S 2.602 3.398 10 O -1.002 7.002 11 O -0.973 6.973 12 C -0.587 4.587 13 C 0.021 3.979 14 C -0.541 4.541 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.262 1.262 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.213 0.787 28 H 0.212 0.788 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.002 0.998 32 H 0.004 0.996 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 21.554 -7.781 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.831 5.831 3 C 0.064 3.936 4 C -0.120 4.120 5 C -0.371 4.371 6 S 0.406 5.594 7 C -0.299 4.299 8 N -0.207 5.207 9 S 2.699 3.301 10 O -0.992 6.992 11 O -0.962 6.962 12 C -0.719 4.719 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.187 1.187 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.163 0.837 27 H 0.229 0.771 28 H 0.229 0.771 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.600 21.174 -9.304 25.041 hybrid contribution 0.439 -1.089 1.773 2.126 sum -9.161 20.085 -7.531 23.325 Atomic orbital electron populations 1.21746 0.76606 1.05030 1.02520 1.57388 1.16062 1.19959 1.89707 1.20058 0.98172 0.85553 0.89845 1.21046 0.92609 0.98617 0.99714 1.27331 1.06480 1.05315 0.97951 1.83714 1.22361 1.41895 1.11437 1.28891 1.03754 0.99690 0.97555 1.66246 1.25244 1.24957 1.04252 1.05165 0.73328 0.73243 0.78367 1.93474 1.65903 1.64226 1.75611 1.93576 1.45053 1.82864 1.74757 1.30376 1.10640 1.07721 1.23116 1.18800 0.94061 0.89903 0.98995 1.21502 1.36988 1.07513 0.91959 0.90431 1.26169 0.94829 0.95967 1.03402 1.70109 1.38303 1.13342 1.35770 0.85330 0.78932 0.77653 0.78126 1.18585 1.20974 1.18657 0.93207 0.91181 0.86509 0.89585 0.83675 0.77055 0.77109 0.84021 0.84110 0.97938 0.97805 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.24 127.77 1.31 2.93 16 2 N -0.99 -25.90 3.10 -543.23 -1.68 -27.58 16 3 C 0.19 4.17 5.72 85.64 0.49 4.66 16 4 C 0.01 0.33 6.32 41.52 0.26 0.59 16 5 C -0.23 -3.78 11.11 66.77 0.74 -3.04 16 6 S 0.15 2.37 23.22 -56.49 -1.31 1.05 16 7 C 0.00 -0.02 12.23 130.65 1.60 1.58 16 8 N -0.49 -15.00 10.07 -191.54 -1.93 -16.93 16 9 S 2.60 100.20 5.32 -56.49 -0.30 99.90 16 10 O -1.00 -44.96 17.09 -127.65 -2.18 -47.14 16 11 O -0.97 -43.92 16.53 -127.65 -2.11 -46.03 16 12 C -0.59 -23.02 6.12 71.98 0.44 -22.58 16 13 C 0.02 1.16 4.98 29.85 0.15 1.30 16 14 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 15 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 18 Si 0.98 43.69 29.54 68.60 2.03 45.72 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.40 7.79 -2.39 -0.02 1.38 16 24 H 0.12 1.11 7.94 -2.38 -0.02 1.09 16 25 H 0.09 2.12 7.61 -2.39 -0.02 2.10 16 26 H 0.15 1.61 7.92 -2.39 -0.02 1.59 16 27 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 30 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.69 314.89 -0.41 -85.10 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.11 Total: 8.52 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 5.68 Total: -44.75 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -3.33 Total: -102.38 kcal Atomic # 8 Polarization: -88.87 SS G_CDS: -4.29 Total: -93.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 102.57 SS G_CDS: -1.61 Total: 100.96 kcal Total: -84.69 -0.41 -85.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111333261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.003 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds